Wall clock time and date at job start Tue Mar 31 2020 19:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.09010 * 110.27340 * 52.91235 * 3 2 1 5 5 O 1.43644 * 110.31015 * 290.71445 * 3 2 1 6 6 C 1.43237 * 109.97238 * 216.65584 * 5 3 2 7 7 C 1.54385 * 107.58797 * 1.71037 * 6 5 3 8 8 C 1.54945 * 110.31326 * 174.99922 * 3 2 1 9 9 H 1.09005 * 111.11819 * 37.40095 * 8 3 2 10 10 C 1.50697 * 111.12904 * 273.28258 * 8 3 2 11 11 O 1.21285 * 119.99730 * 359.97438 * 10 8 3 12 12 N 1.34777 * 120.00282 * 179.97438 * 10 8 3 13 13 C 1.47484 * 125.66020 * 359.97438 * 12 10 8 14 14 C 1.55022 * 104.89780 * 204.03916 * 13 12 10 15 15 C 1.54517 * 101.53485 * 323.61745 * 14 13 12 16 16 C 1.47181 * 125.66191 * 180.02562 * 12 10 8 17 17 C 1.52272 * 110.20009 * 276.40948 * 15 14 13 18 18 C 1.53320 * 109.41893 * 177.80991 * 17 15 14 19 19 N 1.46934 * 108.70533 * 53.50939 * 18 17 15 20 20 C 1.36938 * 120.55991 * 125.74232 * 19 18 17 21 21 H 1.08000 * 120.00079 * 332.30184 * 20 19 18 22 22 C 1.38810 * 119.99674 * 152.29989 * 20 19 18 23 23 N 1.31624 * 119.99942 * 335.03151 * 22 20 19 24 24 Si 1.86800 * 120.00168 * 155.03175 * 22 20 19 25 25 H 1.48497 * 109.46805 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47221 * 239.99910 * 24 22 20 27 27 H 1.48498 * 109.47179 * 119.99666 * 24 22 20 28 28 C 1.46920 * 118.87292 * 306.01884 * 19 18 17 29 29 C 1.52272 * 110.20595 * 153.22506 * 15 14 13 30 30 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46852 * 299.99938 * 1 2 3 32 32 H 1.08993 * 109.47135 * 59.99572 * 1 2 3 33 33 H 1.08999 * 109.47318 * 240.00125 * 2 1 3 34 34 H 1.08999 * 109.47268 * 119.99754 * 2 1 3 35 35 H 1.08996 * 109.83041 * 121.22703 * 6 5 3 36 36 H 1.09004 * 109.82778 * 242.10969 * 6 5 3 37 37 H 1.09007 * 110.84597 * 263.16728 * 7 6 5 38 38 H 1.09001 * 110.84805 * 139.54862 * 7 6 5 39 39 H 1.08997 * 110.35111 * 322.89098 * 13 12 10 40 40 H 1.09001 * 110.35599 * 85.18164 * 13 12 10 41 41 H 1.08995 * 111.01147 * 205.55512 * 14 13 12 42 42 H 1.08999 * 111.01521 * 81.68071 * 14 13 12 43 43 H 1.08992 * 109.90939 * 59.09874 * 16 12 10 44 44 H 1.09000 * 110.05941 * 297.92789 * 16 12 10 45 45 H 1.09001 * 109.48277 * 57.83046 * 17 15 14 46 46 H 1.08999 * 109.48065 * 297.79268 * 17 15 14 47 47 H 1.08994 * 109.59925 * 293.74116 * 18 17 15 48 48 H 1.09005 * 109.72387 * 173.35118 * 18 17 15 49 49 H 0.96995 * 119.99874 * 354.25701 * 23 22 20 50 50 H 1.09002 * 109.59984 * 173.74921 * 28 19 18 51 51 H 1.09002 * 109.59932 * 294.21928 * 28 19 18 52 52 H 1.09004 * 109.47928 * 302.17617 * 29 15 14 53 53 H 1.09004 * 109.47747 * 62.20321 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0042 0.8157 5 8 1.7570 2.0714 -1.2600 6 6 2.8320 2.9457 -1.6229 7 6 3.9116 2.8384 -0.5245 8 6 3.5841 1.4671 0.1267 9 1 4.0371 0.6480 -0.4321 10 6 4.0112 1.4360 1.5715 11 8 3.1759 1.3978 2.4501 12 7 5.3213 1.4507 1.8875 13 6 6.4375 1.4956 0.9246 14 6 7.6438 0.8863 1.6841 15 6 7.4066 1.4156 3.1162 16 6 5.8755 1.4236 3.2507 17 6 7.9655 2.8253 3.2551 18 6 7.6724 3.3533 4.6643 19 7 8.1766 2.3828 5.6455 20 6 9.0424 2.7751 6.6313 21 1 9.6995 3.6167 6.4694 22 6 9.0753 2.0911 7.8387 23 7 8.0151 1.4270 8.2480 24 14 10.6241 2.1130 8.8828 25 1 11.6666 2.9244 8.2047 26 1 11.1185 0.7245 9.0642 27 1 10.3187 2.7070 10.2091 28 6 7.7410 0.9831 5.5473 29 6 8.0294 0.4715 4.1358 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2491 2.6404 -2.5824 36 1 2.4687 3.9714 -1.6872 37 1 3.8093 3.6462 0.2002 38 1 4.9102 2.8319 -0.9613 39 1 6.2028 0.8978 0.0440 40 1 6.6505 2.5257 0.6388 41 1 8.5866 1.2568 1.2816 42 1 7.6113 -0.2029 1.6596 43 1 5.5435 0.5238 3.7685 44 1 5.5561 2.3080 3.8018 45 1 7.4960 3.4767 2.5180 46 1 9.0428 2.8070 3.0906 47 1 6.5971 3.4772 4.7920 48 1 8.1706 4.3120 4.8090 49 1 7.1852 1.4832 7.7490 50 1 8.2864 0.3787 6.2721 51 1 6.6711 0.9184 5.7452 52 1 7.6047 -0.5251 4.0152 53 1 9.1074 0.4287 3.9804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040785672.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:32 Heat of formation + Delta-G solvation = -91.316064 kcal Electronic energy + Delta-G solvation = -31110.686684 eV Core-core repulsion = 27174.220715 eV Total energy + Delta-G solvation = -3936.465969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96723 -40.82172 -39.31951 -37.65011 -35.05437 -34.55515 -33.51286 -32.65146 -31.80925 -30.48025 -29.53591 -28.16241 -26.49685 -24.83044 -24.33043 -23.98618 -23.15037 -22.26155 -21.89997 -20.33428 -19.95118 -19.06991 -18.53113 -17.43658 -17.30069 -16.82990 -16.31348 -16.09878 -16.04852 -15.72516 -15.41079 -15.21978 -15.06353 -14.90703 -14.83508 -14.41175 -14.31611 -14.06577 -13.97004 -13.70543 -13.47812 -13.28741 -13.16500 -13.04452 -12.73797 -12.63347 -12.58593 -12.45470 -12.26616 -12.06032 -11.96608 -11.88348 -11.81238 -11.72270 -11.63480 -11.57859 -11.20762 -11.07965 -10.95222 -10.49217 -10.47836 -9.75912 -8.93664 -8.25714 -5.41484 1.45244 1.57280 1.65313 1.81153 1.81772 2.64865 2.70735 3.18994 3.27760 3.40550 3.49739 3.53155 3.58517 3.68477 3.72048 3.97319 4.11047 4.13111 4.15178 4.16202 4.20490 4.31926 4.37032 4.40839 4.46889 4.50592 4.56534 4.61999 4.64866 4.71416 4.74736 4.78563 4.83286 4.84788 4.92727 4.94398 5.01661 5.03740 5.04539 5.06138 5.12448 5.20770 5.21688 5.22565 5.29407 5.33819 5.34483 5.50670 5.83320 5.99720 6.36341 6.44586 7.00884 7.04605 7.77274 8.21493 8.98081 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.002606 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.467089 B =10740.386225 C =11202.115040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.100 3.900 4 H 0.053 0.947 5 O -0.391 6.391 6 C 0.048 3.952 7 C -0.138 4.138 8 C -0.129 4.129 9 H 0.139 0.861 10 C 0.532 3.468 11 O -0.589 6.589 12 N -0.610 5.610 13 C 0.096 3.904 14 C -0.115 4.115 15 C -0.053 4.053 16 C 0.124 3.876 17 C -0.102 4.102 18 C 0.139 3.861 19 N -0.615 5.615 20 C -0.351 4.351 21 H 0.052 0.948 22 C -0.080 4.080 23 N -0.945 5.945 24 Si 1.119 2.881 25 H -0.270 1.270 26 H -0.286 1.286 27 H -0.294 1.294 28 C 0.157 3.843 29 C -0.108 4.108 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.001 0.999 48 H 0.049 0.951 49 H 0.251 0.749 50 H 0.042 0.958 51 H -0.009 1.009 52 H 0.068 0.932 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -1.074 -26.574 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.043 3.957 4 H 0.071 0.929 5 O -0.311 6.311 6 C -0.028 4.028 7 C -0.175 4.175 8 C -0.150 4.150 9 H 0.157 0.843 10 C 0.321 3.679 11 O -0.469 6.469 12 N -0.342 5.342 13 C -0.025 4.025 14 C -0.153 4.153 15 C -0.054 4.054 16 C 0.001 3.999 17 C -0.140 4.140 18 C 0.014 3.986 19 N -0.340 5.340 20 C -0.481 4.481 21 H 0.070 0.930 22 C -0.276 4.276 23 N -0.587 5.587 24 Si 0.944 3.056 25 H -0.195 1.195 26 H -0.213 1.213 27 H -0.221 1.221 28 C 0.031 3.969 29 C -0.147 4.147 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.019 0.981 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.009 0.991 52 H 0.087 0.913 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.448 -1.683 -24.897 25.347 hybrid contribution -1.051 0.844 0.023 1.348 sum -5.500 -0.839 -24.874 25.489 Atomic orbital electron populations 1.21677 0.94883 1.02187 1.01605 1.21626 0.97395 0.93925 1.02629 1.22713 0.92082 0.94873 0.86072 0.92863 1.88409 1.43991 1.61062 1.37630 1.23317 0.86404 0.94752 0.98340 1.23155 1.02503 0.93963 0.97907 1.22988 0.97740 1.02545 0.91758 0.84285 1.20465 0.80619 0.75346 0.91442 1.90720 1.52033 1.52248 1.51918 1.48664 1.05574 1.71744 1.08230 1.22761 0.84490 1.02932 0.92319 1.22877 0.99150 1.01453 0.91795 1.20870 0.91480 0.96276 0.96738 1.21813 0.94133 0.99941 0.84011 1.21727 1.01228 0.94865 0.96205 1.21113 0.94863 0.92517 0.90105 1.44348 1.53779 1.03616 1.32268 1.20278 1.14554 1.18385 0.94870 0.92980 1.27238 1.04951 0.98917 0.96469 1.70853 1.00968 1.47061 1.39863 0.82808 0.72184 0.76545 0.74062 1.19510 1.21286 1.22142 1.20715 0.94664 0.85632 0.95905 1.21735 1.00968 0.97652 0.94350 0.91459 0.93957 0.92085 0.89623 0.91868 0.88374 0.90649 0.91535 0.85726 0.87241 0.89056 0.87183 0.89790 0.93963 0.94094 0.90014 0.91022 0.98092 0.93243 0.93905 0.93926 0.99066 0.91310 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.85 71.98 0.71 -2.07 16 2 C -0.12 -2.34 5.66 30.59 0.17 -2.16 16 3 C 0.10 2.17 2.55 31.26 0.08 2.25 16 4 H 0.05 1.49 7.37 -2.38 -0.02 1.48 16 5 O -0.39 -7.78 10.81 -148.98 -1.61 -9.39 16 6 C 0.05 0.61 7.79 72.45 0.56 1.17 16 7 C -0.14 -1.73 5.96 31.85 0.19 -1.54 16 8 C -0.13 -2.27 2.12 -10.09 -0.02 -2.30 16 9 H 0.14 1.67 7.62 -2.38 -0.02 1.66 16 10 C 0.53 14.26 7.19 87.66 0.63 14.89 16 11 O -0.59 -22.03 16.04 -3.05 -0.05 -22.08 16 12 N -0.61 -14.81 3.33 -812.26 -2.71 -17.52 16 13 C 0.10 1.35 5.50 86.88 0.48 1.83 16 14 C -0.12 -1.95 5.99 31.80 0.19 -1.76 16 15 C -0.05 -1.47 0.53 -51.91 -0.03 -1.49 16 16 C 0.12 3.97 5.07 86.48 0.44 4.41 16 17 C -0.10 -2.99 4.78 30.46 0.15 -2.84 16 18 C 0.14 5.75 6.23 86.40 0.54 6.29 16 19 N -0.62 -30.90 2.84 -699.45 -1.99 -32.89 16 20 C -0.35 -19.74 9.48 84.03 0.80 -18.94 16 21 H 0.05 2.92 7.94 -2.91 -0.02 2.89 16 22 C -0.08 -4.61 4.68 84.86 0.40 -4.21 16 23 N -0.95 -59.12 12.40 21.65 0.27 -58.85 16 24 Si 1.12 51.43 29.99 68.60 2.06 53.48 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 C 0.16 7.43 4.39 86.26 0.38 7.81 16 29 C -0.11 -3.71 4.69 30.31 0.14 -3.57 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.13 7.99 -2.39 -0.02 1.12 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.08 8.03 -2.38 -0.02 1.06 16 38 H 0.12 0.73 7.67 -2.39 -0.02 0.71 16 39 H 0.11 0.84 7.39 -2.39 -0.02 0.82 16 40 H 0.09 0.99 7.71 -2.39 -0.02 0.97 16 41 H 0.11 1.41 8.01 -2.39 -0.02 1.40 16 42 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 43 H 0.04 1.55 7.59 -2.39 -0.02 1.53 16 44 H 0.04 1.58 6.07 -2.39 -0.01 1.56 16 45 H 0.08 1.95 7.49 -2.39 -0.02 1.93 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.00 0.05 6.53 -2.39 -0.02 0.04 16 48 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 49 H 0.25 16.23 6.74 -92.71 -0.62 15.60 16 50 H 0.04 2.32 6.28 -2.39 -0.01 2.30 16 51 H -0.01 -0.44 7.22 -2.39 -0.02 -0.46 16 52 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 53 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -77.05 396.04 2.79 -74.26 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.01 Total: 15.22 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.80 Total: -2.24 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -4.43 Total: -109.26 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.66 Total: -31.47 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.06 Total: 53.48 kcal Total: -77.05 2.79 -74.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040785672.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.054 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds