Wall clock time and date at job start Tue Mar 31 2020 19:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47009 * 2 1 4 4 H 1.09007 * 115.54673 * 29.33116 * 3 2 1 5 5 C 1.53071 * 117.51603 * 243.60937 * 3 2 1 6 6 C 1.52997 * 117.50123 * 174.99753 * 3 2 1 7 7 H 1.09003 * 117.49526 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50105 * 215.00440 * 6 3 2 9 9 O 1.21276 * 119.99706 * 0.08917 * 8 6 3 10 10 N 1.34772 * 119.99661 * 180.08554 * 8 6 3 11 11 C 1.46500 * 119.99797 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47451 * 180.02562 * 11 10 8 13 13 H 1.08997 * 110.53944 * 61.39329 * 12 11 10 14 14 C 1.55108 * 110.60770 * 184.41169 * 12 11 10 15 15 C 1.54313 * 101.96850 * 155.13983 * 14 12 11 16 16 C 1.53601 * 104.68713 * 339.37174 * 15 14 12 17 17 O 1.43898 * 107.11161 * 357.90234 * 16 15 14 18 18 C 1.52425 * 110.07143 * 220.66173 * 15 14 12 19 19 C 1.53282 * 109.40849 * 178.03424 * 18 15 14 20 20 N 1.46927 * 108.72648 * 53.70304 * 19 18 15 21 21 C 1.36942 * 120.58024 * 125.86536 * 20 19 18 22 22 H 1.08000 * 119.99945 * 332.45946 * 21 20 19 23 23 C 1.38807 * 119.99985 * 152.46408 * 21 20 19 24 24 N 1.31617 * 120.00029 * 159.34932 * 23 21 20 25 25 Si 1.86804 * 120.00086 * 339.35249 * 23 21 20 26 26 H 1.48493 * 109.47109 * 93.16942 * 25 23 21 27 27 H 1.48504 * 109.47084 * 213.17112 * 25 23 21 28 28 H 1.48504 * 109.46831 * 333.16918 * 25 23 21 29 29 C 1.46926 * 118.83657 * 305.83820 * 20 19 18 30 30 C 1.52432 * 110.04976 * 98.04596 * 15 14 12 31 31 H 1.09012 * 109.46855 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47281 * 299.99268 * 1 2 3 33 33 H 1.09001 * 109.47601 * 60.00435 * 1 2 3 34 34 H 1.09003 * 109.46966 * 240.00158 * 2 1 3 35 35 H 1.09001 * 109.46893 * 120.00171 * 2 1 3 36 36 H 1.08995 * 117.51493 * 145.04718 * 5 3 2 37 37 H 1.09004 * 117.49035 * 0.02562 * 5 3 2 38 38 H 0.97001 * 120.00842 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.47502 * 59.99888 * 11 10 8 40 40 H 1.09008 * 109.47005 * 300.00211 * 11 10 8 41 41 H 1.09002 * 110.93072 * 36.97513 * 14 12 11 42 42 H 1.08998 * 110.92776 * 273.30860 * 14 12 11 43 43 H 1.09000 * 109.91079 * 117.26501 * 16 15 14 44 44 H 1.08996 * 109.91309 * 238.34691 * 16 15 14 45 45 H 1.09001 * 109.48376 * 298.02089 * 18 15 14 46 46 H 1.09002 * 109.47747 * 58.05293 * 18 15 14 47 47 H 1.09003 * 109.59592 * 173.47589 * 19 18 15 48 48 H 1.09003 * 109.59960 * 293.92943 * 19 18 15 49 49 H 0.97003 * 120.00199 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.60141 * 294.40356 * 29 20 19 51 51 H 1.09005 * 109.59589 * 173.93724 * 29 20 19 52 52 H 1.09003 * 109.48303 * 301.96767 * 30 15 14 53 53 H 1.08994 * 109.48738 * 62.01381 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8446 1.9081 -1.2161 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1958 8 6 4.0227 2.8618 0.8920 9 8 3.2157 3.6153 1.3937 10 7 5.3422 3.1009 1.0262 11 6 5.8017 4.2709 1.7788 12 6 7.3313 4.3091 1.7784 13 1 7.7114 4.3971 0.7607 14 6 7.8484 5.4752 2.6607 15 6 9.2560 4.9795 3.0534 16 6 9.2060 3.4588 2.8433 17 8 7.8691 3.1333 2.4220 18 6 9.5366 5.3062 4.5156 19 6 10.9172 4.7644 4.9027 20 7 11.9103 5.2799 3.9504 21 6 13.0216 5.9455 4.3946 22 1 12.9910 6.4825 5.3312 23 6 14.1873 5.9300 3.6412 24 7 15.1015 6.8590 3.8242 25 14 14.4586 4.5907 2.3676 26 1 13.9831 5.0638 1.0428 27 1 15.9062 4.2691 2.2881 28 1 13.7020 3.3744 2.7595 29 6 11.6904 5.0683 2.5132 30 6 10.3044 5.6084 2.1429 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7224 2.9433 -1.5344 37 1 3.0101 1.1866 -2.0162 38 1 5.9878 2.4985 0.6247 39 1 5.4398 4.2080 2.8050 40 1 5.4159 5.1774 1.3123 41 1 7.2210 5.6042 3.5426 42 1 7.9073 6.4006 2.0877 43 1 9.9193 3.1669 2.0725 44 1 9.4388 2.9471 3.7771 45 1 9.5175 6.3869 4.6568 46 1 8.7753 4.8439 5.1439 47 1 11.1705 5.0952 5.9099 48 1 10.9061 3.6750 4.8653 49 1 15.9159 6.8485 3.2974 50 1 11.7394 4.0027 2.2887 51 1 12.4537 5.5995 1.9444 52 1 10.0821 5.3583 1.1055 53 1 10.2913 6.6912 2.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045678951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:16 Heat of formation + Delta-G solvation = -69.987134 kcal Electronic energy + Delta-G solvation = -29561.548255 eV Core-core repulsion = 25626.007178 eV Total energy + Delta-G solvation = -3935.541077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61142 -40.94217 -38.62108 -37.99406 -35.87106 -35.05585 -33.31377 -32.96192 -32.06893 -31.73017 -28.66397 -27.01553 -25.82376 -24.91313 -24.46566 -24.32821 -22.91617 -22.21258 -21.47976 -20.90719 -19.98147 -18.71631 -18.31327 -17.60679 -17.22538 -16.84780 -16.60695 -16.37445 -15.99980 -15.86589 -15.49112 -15.31511 -15.17838 -15.04118 -14.84994 -14.49056 -14.29555 -14.23627 -13.68304 -13.60953 -13.51098 -13.30213 -13.23676 -12.97936 -12.91143 -12.65452 -12.40800 -12.38746 -12.20977 -12.17203 -12.07692 -11.92416 -11.65996 -11.55875 -11.26887 -11.14190 -11.13138 -11.04146 -10.77688 -10.69431 -10.57411 -10.14473 -8.90955 -8.16665 -5.47943 1.28410 1.40862 1.45800 1.49593 2.08515 2.41088 2.78444 2.86907 3.05855 3.33695 3.46070 3.61787 3.69316 3.77350 3.79777 3.86764 3.99764 4.08747 4.11279 4.19770 4.28640 4.29799 4.34721 4.47933 4.48954 4.55590 4.57402 4.63264 4.67443 4.72019 4.73961 4.78624 4.80947 4.88674 4.94059 4.99659 4.99801 5.03233 5.13903 5.16034 5.18206 5.22726 5.23060 5.27899 5.29628 5.38271 5.50015 5.50358 5.87289 5.89259 6.12867 6.51231 6.92806 7.20220 7.63376 8.03308 9.03369 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.001974 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.477792 B =14178.464363 C =14518.939685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.125 4.125 4 H 0.093 0.907 5 C -0.134 4.134 6 C -0.196 4.196 7 H 0.146 0.854 8 C 0.536 3.464 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.132 3.868 12 C 0.071 3.929 13 H 0.090 0.910 14 C -0.131 4.131 15 C -0.077 4.077 16 C 0.060 3.940 17 O -0.382 6.382 18 C -0.110 4.110 19 C 0.140 3.860 20 N -0.618 5.618 21 C -0.248 4.248 22 H 0.049 0.951 23 C -0.036 4.036 24 N -0.958 5.958 25 Si 0.947 3.053 26 H -0.273 1.273 27 H -0.313 1.313 28 H -0.260 1.260 29 C 0.118 3.882 30 C -0.112 4.112 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.037 0.963 49 H 0.261 0.739 50 H 0.035 0.965 51 H 0.047 0.953 52 H 0.081 0.919 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.491 -13.443 -11.740 31.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.144 4.144 4 H 0.111 0.889 5 C -0.172 4.172 6 C -0.217 4.217 7 H 0.163 0.837 8 C 0.324 3.676 9 O -0.470 6.470 10 N -0.362 5.362 11 C 0.008 3.992 12 C 0.013 3.987 13 H 0.108 0.892 14 C -0.169 4.169 15 C -0.077 4.077 16 C -0.017 4.017 17 O -0.301 6.301 18 C -0.149 4.149 19 C 0.015 3.985 20 N -0.342 5.342 21 C -0.378 4.378 22 H 0.067 0.933 23 C -0.230 4.230 24 N -0.605 5.605 25 Si 0.776 3.224 26 H -0.200 1.200 27 H -0.242 1.242 28 H -0.184 1.184 29 C -0.006 4.006 30 C -0.151 4.151 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.252 0.748 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.053 0.947 51 H 0.065 0.935 52 H 0.100 0.900 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.008 -13.056 -11.359 32.077 hybrid contribution 1.551 -0.006 -0.202 1.564 sum -25.457 -13.062 -11.562 30.860 Atomic orbital electron populations 1.21749 0.95033 1.02224 1.01796 1.21160 0.96408 0.92343 1.02932 1.22491 0.90801 0.99394 1.01678 0.88899 1.23208 1.00335 1.03382 0.90228 1.22362 0.98304 0.98364 1.02678 0.83655 1.20218 0.82039 0.85916 0.79379 1.90673 1.55075 1.50572 1.50701 1.45806 1.07000 1.28608 1.54832 1.21378 0.91806 0.89163 0.96856 1.23400 0.92395 0.85390 0.97508 0.89183 1.23150 0.94473 0.98701 1.00604 1.21299 0.95150 0.95045 0.96224 1.23263 0.83797 0.94402 1.00216 1.88868 1.28665 1.35287 1.77317 1.21847 0.97093 1.01140 0.94816 1.21179 0.88440 0.96133 0.92722 1.44442 1.22663 1.65792 1.01348 1.18870 0.89213 1.23075 1.06626 0.93298 1.25910 0.95726 0.99907 1.01505 1.69973 1.11051 1.34580 1.44848 0.85908 0.75260 0.81704 0.79565 1.19981 1.24226 1.18420 1.21445 0.96706 0.97790 0.84706 1.21908 0.93995 1.00321 0.98885 0.91550 0.93455 0.92356 0.89969 0.91474 0.89183 0.85159 0.74773 0.92021 0.89642 0.89573 0.88653 0.92257 0.89701 0.92522 0.89968 0.92904 0.94535 0.93031 0.94720 0.93470 0.90025 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.87 71.98 0.71 -0.72 16 2 C -0.09 -0.89 6.22 30.59 0.19 -0.70 16 3 C -0.12 -1.75 5.25 -10.77 -0.06 -1.81 16 4 H 0.09 1.78 7.60 -2.38 -0.02 1.76 16 5 C -0.13 -1.48 9.88 30.62 0.30 -1.18 16 6 C -0.20 -2.75 5.91 -11.54 -0.07 -2.81 16 7 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 8 C 0.54 11.25 7.61 87.66 0.67 11.92 16 9 O -0.59 -17.36 16.26 -3.02 -0.05 -17.41 16 10 N -0.71 -12.50 5.49 -463.06 -2.54 -15.04 16 11 C 0.13 2.47 5.44 86.38 0.47 2.94 16 12 C 0.07 1.29 3.42 31.32 0.11 1.40 16 13 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 14 C -0.13 -2.60 5.67 31.76 0.18 -2.42 16 15 C -0.08 -1.96 0.61 -51.91 -0.03 -2.00 16 16 C 0.06 1.48 6.15 72.18 0.44 1.93 16 17 O -0.38 -8.68 11.10 -148.98 -1.65 -10.34 16 18 C -0.11 -3.17 4.63 30.50 0.14 -3.02 16 19 C 0.14 5.11 6.21 86.39 0.54 5.65 16 20 N -0.62 -27.94 2.76 -698.71 -1.93 -29.87 16 21 C -0.25 -13.92 10.03 84.03 0.84 -13.08 16 22 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 23 C -0.04 -2.08 5.23 84.86 0.44 -1.64 16 24 N -0.96 -60.08 13.97 21.65 0.30 -59.78 16 25 Si 0.95 45.82 24.35 68.60 1.67 47.49 16 26 H -0.27 -12.38 6.63 99.48 0.66 -11.72 16 27 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 28 H -0.26 -11.94 6.64 99.48 0.66 -11.27 16 29 C 0.12 4.69 3.90 86.40 0.34 5.03 16 30 C -0.11 -3.38 4.59 30.50 0.14 -3.23 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.54 7.88 -2.39 -0.02 0.53 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.13 0.78 8.03 -2.39 -0.02 0.76 16 38 H 0.42 5.62 8.42 -92.71 -0.78 4.84 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.09 1.65 7.75 -2.39 -0.02 1.64 16 42 H 0.09 1.70 7.83 -2.39 -0.02 1.68 16 43 H 0.06 1.52 6.60 -2.39 -0.02 1.50 16 44 H 0.08 2.19 6.43 -2.39 -0.02 2.17 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 48 H 0.04 1.25 6.80 -2.39 -0.02 1.24 16 49 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.04 1.32 5.86 -2.39 -0.01 1.31 16 51 H 0.05 2.12 4.47 -2.38 -0.01 2.11 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.84 402.72 1.17 -70.67 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.01 Total: 18.02 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.36 Total: -3.75 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -4.16 Total: -104.69 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.70 Total: -27.74 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -71.84 1.17 -70.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045678951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.679 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds