Wall clock time and date at job start Tue Mar 31 2020 19:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 H 1.09002 * 110.27779 * 304.36243 * 3 2 1 5 5 C 1.54947 * 110.31071 * 182.16669 * 3 2 1 6 6 C 1.55457 * 100.98960 * 204.68864 * 5 3 2 7 7 C 1.54386 * 102.18386 * 34.03787 * 6 5 3 8 8 H 1.09001 * 109.82801 * 98.29991 * 7 6 5 9 9 C 1.50701 * 109.82878 * 219.18000 * 7 6 5 10 10 O 1.21278 * 119.99729 * 114.81944 * 9 7 6 11 11 N 1.34770 * 119.99967 * 294.81169 * 9 7 6 12 12 C 1.46501 * 119.99724 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.43568 * 60.02575 * 13 12 11 15 15 C 1.52457 * 109.68626 * 179.86246 * 13 12 11 16 16 C 1.53703 * 108.98606 * 65.97337 * 15 13 12 17 17 H 1.08998 * 112.58595 * 188.08278 * 16 15 13 18 18 C 1.54608 * 107.83089 * 312.38403 * 16 15 13 19 19 C 1.54310 * 104.75297 * 88.66209 * 18 16 15 20 20 C 1.54995 * 104.71078 * 359.83266 * 19 18 16 21 21 H 1.09004 * 112.26570 * 146.97567 * 20 19 18 22 22 C 1.53150 * 109.43944 * 300.11584 * 13 12 11 23 23 N 1.48296 * 107.27611 * 64.16259 * 16 15 13 24 24 C 1.36936 * 128.21058 * 107.40071 * 23 16 15 25 25 H 1.08000 * 119.99634 * 155.04707 * 24 23 16 26 26 C 1.38809 * 119.99888 * 335.04259 * 24 23 16 27 27 N 1.31624 * 120.00087 * 354.98212 * 26 24 23 28 28 Si 1.86800 * 119.99832 * 174.98872 * 26 24 23 29 29 H 1.48497 * 109.46925 * 269.99656 * 28 26 24 30 30 H 1.48500 * 109.47290 * 29.99719 * 28 26 24 31 31 H 1.48499 * 109.46995 * 150.00027 * 28 26 24 32 32 O 1.43236 * 107.66485 * 338.74099 * 7 6 5 33 33 H 1.08998 * 109.47092 * 300.00086 * 1 2 3 34 34 H 1.09007 * 109.47224 * 59.99875 * 1 2 3 35 35 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 36 36 H 1.09002 * 109.47507 * 240.00130 * 2 1 3 37 37 H 1.08996 * 109.47149 * 119.99664 * 2 1 3 38 38 H 1.08997 * 111.12417 * 322.55749 * 5 3 2 39 39 H 1.08998 * 111.12613 * 86.67741 * 5 3 2 40 40 H 1.08996 * 110.83575 * 275.89378 * 6 5 3 41 41 H 1.08998 * 110.92119 * 152.22105 * 6 5 3 42 42 H 0.97007 * 120.00353 * 0.02562 * 11 9 7 43 43 H 1.08998 * 109.46899 * 60.00993 * 12 11 9 44 44 H 1.08997 * 109.47809 * 300.00266 * 12 11 9 45 45 H 1.08995 * 109.39078 * 306.19170 * 15 13 12 46 46 H 1.09009 * 109.64511 * 185.89697 * 15 13 12 47 47 H 1.08994 * 110.38407 * 207.48333 * 18 16 15 48 48 H 1.09001 * 110.38121 * 329.84728 * 18 16 15 49 49 H 1.08994 * 110.38301 * 118.81969 * 19 18 16 50 50 H 1.09004 * 110.38367 * 241.19039 * 19 18 16 51 51 H 1.08993 * 109.57228 * 174.00685 * 22 13 12 52 52 H 1.08996 * 109.56490 * 53.64142 * 22 13 12 53 53 H 0.97001 * 119.99779 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9910 -0.8440 5 6 3.5883 1.4655 -0.0549 6 6 3.8872 2.8482 0.5897 7 6 2.7560 2.9726 1.6330 8 1 3.1268 2.6843 2.6166 9 6 2.2513 4.3921 1.6730 10 8 1.1153 4.6416 1.3296 11 7 3.0624 5.3841 2.0906 12 6 2.5720 6.7640 2.1289 13 6 3.6827 7.6861 2.6359 14 1 4.5400 7.6237 1.9656 15 6 3.1785 9.1244 2.6745 16 6 2.0676 9.2366 3.7309 17 1 1.5676 10.2050 3.7112 18 6 1.0825 8.0661 3.5081 19 6 1.6503 6.9080 4.3552 20 6 2.9306 7.4887 5.0079 21 1 3.1136 7.0736 5.9990 22 6 4.1033 7.2515 4.0429 23 7 2.6831 8.9503 5.0493 24 6 2.9620 9.8282 6.0625 25 1 3.0259 9.4747 7.0810 26 6 3.1628 11.1724 5.7804 27 7 3.1832 11.5869 4.5313 28 14 3.4043 12.3932 7.1736 29 1 2.0860 12.9335 7.5922 30 1 4.0473 11.7099 8.3246 31 1 4.2714 13.5066 6.7113 32 8 1.6988 2.0920 1.2349 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 4.0145 0.6565 0.5382 39 1 3.9455 1.4252 -1.0839 40 1 3.8202 3.6443 -0.1518 41 1 4.8635 2.8489 1.0743 42 1 3.9712 5.1845 2.3650 43 1 1.7140 6.8262 2.7983 44 1 2.2740 7.0718 1.1266 45 1 2.7809 9.3949 1.6964 46 1 3.9988 9.7934 2.9349 47 1 0.0857 8.3374 3.8557 48 1 1.0554 7.7879 2.4545 49 1 0.9329 6.6095 5.1196 50 1 1.9027 6.0601 3.7184 51 1 4.9645 7.8375 4.3639 52 1 4.3619 6.1927 4.0359 53 1 3.3231 12.5263 4.3342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048531662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:56 Heat of formation + Delta-G solvation = 7.043387 kcal Electronic energy + Delta-G solvation = -31285.546967 eV Core-core repulsion = 27353.346184 eV Total energy + Delta-G solvation = -3932.200783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.75100 -41.12693 -39.29811 -36.17591 -34.67442 -34.44441 -33.24115 -32.83579 -32.29372 -31.41615 -29.83081 -28.01150 -25.71821 -24.89468 -24.63788 -22.82423 -22.30102 -22.04305 -21.39654 -20.84948 -20.37804 -18.85290 -18.37938 -18.00789 -17.19888 -16.98080 -16.71225 -16.40528 -15.90644 -15.34569 -14.97906 -14.89798 -14.55449 -14.45303 -14.29032 -14.23543 -14.08894 -13.79837 -13.67421 -13.33430 -13.13887 -13.06515 -12.95446 -12.81606 -12.73799 -12.67836 -12.48103 -12.39479 -12.28458 -11.96568 -11.95083 -11.73010 -11.52253 -11.47851 -11.26632 -11.13736 -11.01284 -10.86150 -10.76717 -10.50154 -10.21261 -9.46881 -8.60394 -7.84603 -5.23326 1.46822 1.47790 1.55851 1.66486 2.12078 2.51048 2.93836 3.33959 3.48013 3.61523 3.73026 3.79912 3.96280 3.96756 4.04260 4.07270 4.17798 4.25779 4.25981 4.29967 4.38870 4.39640 4.50143 4.57612 4.57967 4.64061 4.73078 4.79939 4.83392 4.89082 4.91703 4.96379 5.01530 5.03207 5.05752 5.09167 5.13065 5.16952 5.20022 5.31730 5.32115 5.40784 5.44600 5.51631 5.56808 5.58597 5.63798 5.77662 5.93380 6.02254 6.32207 6.67596 7.11979 7.34745 7.76915 8.63262 9.27766 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032093 B = 0.002483 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.262161 B =11275.802945 C =11444.901608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.064 3.936 4 H 0.053 0.947 5 C -0.140 4.140 6 C -0.141 4.141 7 C 0.063 3.937 8 H 0.129 0.871 9 C 0.491 3.509 10 O -0.580 6.580 11 N -0.706 5.706 12 C 0.015 3.985 13 C -0.073 4.073 14 H 0.071 0.929 15 C -0.102 4.102 16 C 0.182 3.818 17 H 0.050 0.950 18 C -0.164 4.164 19 C -0.149 4.149 20 C 0.141 3.859 21 H 0.066 0.934 22 C -0.112 4.112 23 N -0.604 5.604 24 C -0.239 4.239 25 H 0.068 0.932 26 C -0.050 4.050 27 N -0.929 5.929 28 Si 0.967 3.033 29 H -0.291 1.291 30 H -0.271 1.271 31 H -0.295 1.295 32 O -0.375 6.375 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.410 0.590 43 H 0.180 0.820 44 H 0.040 0.960 45 H 0.043 0.957 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.103 0.897 49 H 0.051 0.949 50 H 0.114 0.886 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -23.457 -10.123 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C 0.007 3.993 4 H 0.071 0.929 5 C -0.177 4.177 6 C -0.179 4.179 7 C 0.002 3.998 8 H 0.147 0.853 9 C 0.278 3.722 10 O -0.459 6.459 11 N -0.360 5.360 12 C -0.105 4.105 13 C -0.091 4.091 14 H 0.089 0.911 15 C -0.142 4.142 16 C 0.075 3.925 17 H 0.068 0.932 18 C -0.203 4.203 19 C -0.187 4.187 20 C 0.035 3.965 21 H 0.084 0.916 22 C -0.151 4.151 23 N -0.326 5.326 24 C -0.368 4.368 25 H 0.086 0.914 26 C -0.245 4.245 27 N -0.575 5.575 28 Si 0.797 3.203 29 H -0.219 1.219 30 H -0.196 1.196 31 H -0.222 1.222 32 O -0.294 6.294 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.142 0.858 42 H 0.247 0.753 43 H 0.195 0.805 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.120 0.880 49 H 0.070 0.930 50 H 0.132 0.868 51 H 0.060 0.940 52 H 0.102 0.898 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.389 -23.062 -10.186 25.438 hybrid contribution 0.449 1.723 0.594 1.877 sum 3.838 -21.340 -9.591 23.709 Atomic orbital electron populations 1.21728 0.96256 1.01847 1.01199 1.21660 0.96085 0.93660 1.03811 1.23309 0.95725 0.94116 0.86133 0.92881 1.23350 0.93620 0.97128 1.03609 1.23182 0.98732 0.98654 0.97327 1.22827 0.88454 0.86048 1.02479 0.85320 1.21639 0.85527 0.88568 0.76494 1.90684 1.20904 1.84899 1.49422 1.46126 1.16724 1.07020 1.66088 1.24779 1.02838 0.79966 1.02882 1.20988 0.97113 0.94320 0.96719 0.91097 1.21711 0.99857 0.95135 0.97490 1.21181 0.91127 0.94686 0.85469 0.93198 1.23478 0.99029 0.97132 1.00615 1.23401 0.98001 0.98276 0.99057 1.21856 0.93187 0.84961 0.96498 0.91554 1.22035 0.98061 1.00272 0.94781 1.45267 1.69490 1.03095 1.14775 1.19182 1.41073 0.89176 0.87379 0.91421 1.25717 1.01158 0.99477 0.98177 1.70071 1.55399 1.14302 1.17721 0.85259 0.77102 0.78782 0.79195 1.21854 1.19589 1.22193 1.88519 1.42473 1.57698 1.40716 0.94262 0.93309 0.91371 0.88475 0.90665 0.88094 0.87973 0.91051 0.85834 0.75320 0.80510 0.94153 0.93786 0.93327 0.93471 0.87985 0.92993 0.86833 0.94035 0.89825 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.83 71.98 0.71 -1.81 16 2 C -0.11 -1.53 5.68 30.59 0.17 -1.35 16 3 C 0.06 1.10 3.43 31.26 0.11 1.20 16 4 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.14 -1.39 6.57 32.11 0.21 -1.18 16 6 C -0.14 -1.67 6.53 31.91 0.21 -1.46 16 7 C 0.06 1.20 3.94 30.32 0.12 1.32 16 8 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 9 C 0.49 13.18 6.78 87.66 0.59 13.78 16 10 O -0.58 -21.74 16.52 15.77 0.26 -21.48 16 11 N -0.71 -16.48 4.36 -463.07 -2.02 -18.50 16 12 C 0.02 0.46 2.68 86.38 0.23 0.69 16 13 C -0.07 -2.35 2.74 -10.92 -0.03 -2.38 16 14 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.10 -4.28 5.16 30.65 0.16 -4.12 16 16 C 0.18 8.48 3.08 45.43 0.14 8.62 16 17 H 0.05 2.74 6.92 -2.39 -0.02 2.72 16 18 C -0.16 -6.39 5.72 31.59 0.18 -6.21 16 19 C -0.15 -5.25 5.74 31.72 0.18 -5.07 16 20 C 0.14 5.49 4.34 45.57 0.20 5.69 16 21 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 22 C -0.11 -3.67 5.27 30.88 0.16 -3.51 16 23 N -0.60 -29.63 2.79 -636.47 -1.77 -31.41 16 24 C -0.24 -13.06 10.34 84.03 0.87 -12.19 16 25 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 26 C -0.05 -2.77 5.43 84.86 0.46 -2.31 16 27 N -0.93 -53.70 10.33 21.65 0.22 -53.48 16 28 Si 0.97 45.20 29.56 68.60 2.03 47.23 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 31 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 32 O -0.38 -9.07 9.90 -130.19 -1.29 -10.36 16 33 H 0.04 0.83 7.91 -2.39 -0.02 0.81 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.68 8.06 -2.39 -0.02 0.66 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 1.02 7.84 -2.39 -0.02 1.00 16 41 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.41 6.88 7.31 -92.70 -0.68 6.20 16 43 H 0.18 5.93 1.12 -109.37 -0.12 5.81 16 44 H 0.04 1.31 8.00 -2.39 -0.02 1.29 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 2.41 7.39 -2.38 -0.02 2.39 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.10 3.69 4.83 -2.39 -0.01 3.68 16 49 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.11 3.56 3.95 -2.38 -0.01 3.55 16 51 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 52 H 0.08 2.01 6.71 -2.39 -0.02 2.00 16 53 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -71.98 388.21 2.21 -69.77 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.11 Total: 28.51 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.68 Total: -10.29 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -3.57 Total: -103.38 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.03 Total: -31.83 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.98 2.21 -69.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048531662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.809 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds