Wall clock time and date at job start Tue Mar 31 2020 20:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 H 1.09004 * 109.47414 * 56.29289 * 3 2 1 5 5 O 1.42898 * 109.47228 * 296.29293 * 3 2 1 6 6 C 1.42898 * 114.00003 * 90.00135 * 5 3 2 7 7 C 1.54960 * 110.92127 * 96.54165 * 6 5 3 8 8 C 1.54271 * 104.15837 * 156.29512 * 7 6 5 9 9 C 1.53874 * 106.63936 * 336.44541 * 8 7 6 10 10 C 1.54263 * 106.60070 * 359.97291 * 9 8 7 11 11 C 1.50697 * 109.46724 * 176.29265 * 3 2 1 12 12 O 1.21282 * 119.99895 * 106.05330 * 11 3 2 13 13 N 1.34779 * 120.00189 * 286.04496 * 11 3 2 14 14 C 1.46669 * 125.33763 * 5.00682 * 13 11 3 15 15 C 1.53722 * 107.94266 * 180.54531 * 14 13 11 16 16 H 1.09000 * 112.56064 * 139.72244 * 15 14 13 17 17 C 1.53697 * 109.33909 * 266.25109 * 15 14 13 18 18 N 1.46639 * 108.00779 * 127.55917 * 17 15 14 19 19 C 1.36932 * 125.32999 * 180.81754 * 18 17 15 20 20 H 1.07997 * 120.00138 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99811 * 0.02562 * 19 18 17 22 22 N 1.31621 * 120.00160 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99715 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46832 * 90.00729 * 23 21 19 25 25 H 1.48498 * 109.47031 * 209.99931 * 23 21 19 26 26 H 1.48491 * 109.47644 * 330.00404 * 23 21 19 27 27 C 1.46751 * 109.34181 * 0.83403 * 18 17 15 28 28 C 1.53931 * 106.71916 * 341.66307 * 27 18 17 29 29 H 1.09002 * 113.01131 * 150.83136 * 28 27 18 30 30 C 1.46778 * 125.33930 * 184.70053 * 13 11 3 31 31 H 1.09003 * 109.46821 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47263 * 299.99612 * 1 2 3 33 33 H 1.08997 * 109.47128 * 60.00019 * 1 2 3 34 34 H 1.08998 * 109.47382 * 239.99872 * 2 1 3 35 35 H 1.08996 * 109.46763 * 119.99581 * 2 1 3 36 36 H 1.08995 * 110.67463 * 333.23404 * 6 5 3 37 37 H 1.09004 * 110.47972 * 37.64308 * 7 6 5 38 38 H 1.09002 * 110.52912 * 274.97118 * 7 6 5 39 39 H 1.08998 * 110.03128 * 217.13702 * 8 7 6 40 40 H 1.08999 * 110.03222 * 95.75157 * 8 7 6 41 41 H 1.08996 * 110.03423 * 119.26445 * 9 8 7 42 42 H 1.09009 * 110.02964 * 240.64158 * 9 8 7 43 43 H 1.09002 * 110.48504 * 142.28621 * 10 9 8 44 44 H 1.09002 * 110.48880 * 264.80432 * 10 9 8 45 45 H 1.09007 * 109.77112 * 300.16857 * 14 13 11 46 46 H 1.09004 * 109.76888 * 60.92134 * 14 13 11 47 47 H 1.09000 * 109.75865 * 247.19939 * 17 15 14 48 48 H 1.08991 * 109.75999 * 7.91566 * 17 15 14 49 49 H 0.97003 * 119.99647 * 179.97438 * 22 21 19 50 50 H 1.08993 * 110.01271 * 222.34646 * 27 18 17 51 51 H 1.09002 * 110.00603 * 100.97141 * 27 18 17 52 52 H 1.08993 * 110.02715 * 280.77698 * 30 13 11 53 53 H 1.09002 * 110.02490 * 42.19395 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6234 1.9752 0.8549 5 8 1.6361 2.0906 -1.2079 6 6 0.3683 2.7442 -1.1209 7 6 0.5436 4.2531 -0.8145 8 6 -0.7537 4.8988 -1.3436 9 6 -1.3154 3.9462 -2.4136 10 6 -0.3396 2.7544 -2.4985 11 6 3.5441 1.4435 0.0919 12 8 4.2111 1.7125 -0.8847 13 7 4.1482 1.1456 1.2593 14 6 3.4648 0.7041 2.4796 15 6 4.5295 0.4907 3.5678 16 1 4.2041 0.8439 4.5462 17 6 4.9626 -0.9840 3.5737 18 7 6.4253 -1.0272 3.4794 19 6 7.1830 -2.1672 3.4405 20 1 8.2585 -2.0986 3.3706 21 6 6.5686 -3.4109 3.4908 22 7 5.2578 -3.4945 3.5754 23 14 7.6022 -4.9660 3.4369 24 1 7.9664 -5.3663 4.8198 25 1 6.8238 -6.0557 2.7951 26 1 8.8378 -4.7124 2.6534 27 6 6.9501 0.3425 3.4336 28 6 5.7748 1.2540 3.0371 29 1 5.8642 2.2634 3.4386 30 6 5.5937 1.2060 1.5069 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 -0.2592 2.2681 -0.3676 37 1 1.4105 4.6512 -1.3420 38 1 0.6408 4.4164 0.2588 39 1 -0.5335 5.8699 -1.7868 40 1 -1.4718 5.0133 -0.5317 41 1 -2.3057 3.5979 -2.1205 42 1 -1.3686 4.4554 -3.3759 43 1 -0.8863 1.8241 -2.6533 44 1 0.3829 2.9092 -3.2999 45 1 2.7560 1.4670 2.8018 46 1 2.9388 -0.2315 2.2897 47 1 4.6388 -1.4594 4.4996 48 1 4.5229 -1.5007 2.7208 49 1 4.8285 -4.3636 3.6102 50 1 7.7441 0.4131 2.6903 51 1 7.3301 0.6292 4.4142 52 1 6.0797 0.3201 1.0983 53 1 6.0128 2.1046 1.0541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049091585.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:52 Heat of formation + Delta-G solvation = -79.097557 kcal Electronic energy + Delta-G solvation = -30974.386917 eV Core-core repulsion = 27038.450782 eV Total energy + Delta-G solvation = -3935.936135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75258 -40.40870 -39.30688 -37.20931 -36.63078 -34.44341 -33.79349 -31.72399 -31.36035 -29.79661 -29.39836 -27.93470 -27.24815 -26.51952 -24.58450 -22.96145 -21.82161 -21.68328 -21.15349 -20.89095 -20.60274 -18.89305 -18.48829 -18.01529 -17.23561 -16.82140 -16.60741 -16.30864 -16.17567 -15.81008 -15.52894 -15.41392 -14.73766 -14.59407 -14.42976 -14.27652 -14.06477 -13.63484 -13.60948 -13.48941 -13.34674 -13.25842 -13.11537 -12.95558 -12.89474 -12.74698 -12.66801 -12.33850 -12.07458 -12.03847 -12.00866 -11.96099 -11.86697 -11.72774 -11.53196 -11.38997 -11.31084 -11.24091 -10.92879 -10.67060 -10.36587 -9.68538 -8.85425 -7.85491 -5.18915 1.44480 1.45254 1.45725 1.53850 1.68527 2.48738 2.79458 3.29550 3.33241 3.45812 3.61131 3.66427 3.72782 3.80552 3.83659 3.87062 3.96814 4.02670 4.19013 4.25684 4.29252 4.33970 4.43716 4.49920 4.51098 4.59635 4.61955 4.64175 4.71397 4.75898 4.78736 4.84739 4.91010 4.95602 5.00618 5.05038 5.06713 5.09190 5.12108 5.16570 5.20369 5.27074 5.28186 5.34806 5.38441 5.48121 5.48214 5.68369 5.80198 6.19771 6.23266 6.46921 7.04601 7.13587 7.81521 8.41886 9.24233 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002747 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.606633 B =10191.559290 C =10807.689466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.092 3.908 4 H 0.113 0.887 5 O -0.373 6.373 6 C 0.065 3.935 7 C -0.150 4.150 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.520 3.480 12 O -0.578 6.578 13 N -0.606 5.606 14 C 0.109 3.891 15 C -0.110 4.110 16 H 0.127 0.873 17 C 0.195 3.805 18 N -0.625 5.625 19 C -0.241 4.241 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.945 5.945 23 Si 0.972 3.028 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.138 3.862 28 C -0.091 4.091 29 H 0.135 0.865 30 C 0.123 3.877 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.246 0.754 50 H 0.033 0.967 51 H 0.035 0.965 52 H 0.033 0.967 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 16.646 -3.817 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.031 3.969 4 H 0.131 0.869 5 O -0.292 6.292 6 C 0.008 3.992 7 C -0.188 4.188 8 C -0.156 4.156 9 C -0.156 4.156 10 C -0.161 4.161 11 C 0.309 3.691 12 O -0.458 6.458 13 N -0.340 5.340 14 C -0.013 4.013 15 C -0.130 4.130 16 H 0.145 0.855 17 C 0.070 3.930 18 N -0.351 5.351 19 C -0.371 4.371 20 H 0.096 0.904 21 C -0.256 4.256 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.200 1.200 27 C 0.012 3.988 28 C -0.110 4.110 29 H 0.153 0.847 30 C 0.000 4.000 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.030 0.970 48 H 0.029 0.971 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.053 0.947 52 H 0.052 0.948 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.284 16.602 -4.590 23.704 hybrid contribution 1.068 -1.548 -0.097 1.883 sum -15.216 15.055 -4.687 21.912 Atomic orbital electron populations 1.21904 0.92254 1.03389 1.03102 1.22040 0.99205 0.94163 1.02867 1.21863 0.89138 0.95759 0.90139 0.86912 1.88049 1.37846 1.70529 1.32739 1.23742 0.83820 0.92235 0.99438 1.22882 0.98890 0.95511 1.01539 1.22041 0.95917 0.98748 0.98917 1.22076 0.98741 0.95057 0.99726 1.22438 0.97978 0.99877 0.95795 1.20783 0.91058 0.76182 0.81061 1.90662 1.67581 1.50727 1.36781 1.48299 1.08248 1.65795 1.11642 1.22204 0.95421 1.00685 0.82987 1.23067 0.94458 0.96030 0.99424 0.85503 1.20863 0.83301 0.90977 0.97902 1.44508 1.03019 1.01010 1.86598 1.19389 0.90540 0.84457 1.42676 0.90391 1.25549 0.97056 1.00290 1.02703 1.70152 1.08292 1.22926 1.58053 0.85167 0.77729 0.79396 0.77590 1.21009 1.22247 1.19950 1.21375 0.95049 0.84145 0.98220 1.22956 0.95184 1.00326 0.92565 0.84673 1.21853 0.81130 1.00435 0.96555 0.91417 0.90273 0.91524 0.93050 0.90237 0.88309 0.92879 0.90730 0.91321 0.90052 0.89911 0.91013 0.90313 0.92435 0.87364 0.91306 0.97030 0.97054 0.94473 0.94846 0.94725 0.94836 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.56 71.98 0.62 -1.90 16 2 C -0.14 -3.55 5.56 30.60 0.17 -3.38 16 3 C 0.09 2.39 2.07 29.85 0.06 2.45 16 4 H 0.11 2.15 7.39 -2.39 -0.02 2.14 16 5 O -0.37 -10.39 9.27 -130.32 -1.21 -11.60 16 6 C 0.06 1.21 1.97 31.91 0.06 1.28 16 7 C -0.15 -2.58 6.57 31.70 0.21 -2.37 16 8 C -0.12 -1.44 6.80 31.32 0.21 -1.23 16 9 C -0.12 -1.40 6.80 31.32 0.21 -1.19 16 10 C -0.12 -2.07 6.46 31.67 0.20 -1.87 16 11 C 0.52 18.18 7.14 87.66 0.63 18.81 16 12 O -0.58 -25.65 16.87 15.62 0.26 -25.39 16 13 N -0.61 -19.76 3.31 -817.00 -2.71 -22.47 16 14 C 0.11 2.94 5.47 86.59 0.47 3.41 16 15 C -0.11 -3.43 4.02 -9.49 -0.04 -3.47 16 16 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.19 8.93 4.75 86.59 0.41 9.34 16 18 N -0.63 -31.16 3.37 -697.87 -2.35 -33.51 16 19 C -0.24 -13.49 10.25 84.03 0.86 -12.63 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.06 -3.56 5.48 84.86 0.47 -3.09 16 22 N -0.95 -55.74 10.25 21.65 0.22 -55.52 16 23 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.14 5.32 6.37 86.65 0.55 5.87 16 28 C -0.09 -2.76 4.19 -9.26 -0.04 -2.80 16 29 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 30 C 0.12 4.31 6.08 86.72 0.53 4.84 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.98 7.95 -2.39 -0.02 0.96 16 33 H 0.07 1.07 5.49 -2.39 -0.01 1.06 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.04 5.64 -2.39 -0.01 2.02 16 36 H 0.10 1.43 5.48 -2.39 -0.01 1.41 16 37 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.08 1.16 7.72 -2.39 -0.02 1.14 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 1.96 7.88 -2.38 -0.02 1.94 16 46 H 0.07 2.02 5.35 -2.39 -0.01 2.01 16 47 H 0.01 0.60 7.46 -2.39 -0.02 0.58 16 48 H 0.01 0.60 6.50 -2.39 -0.02 0.58 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 50 H 0.03 1.32 7.94 -2.39 -0.02 1.30 16 51 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.03 1.46 7.72 -2.39 -0.02 1.44 16 53 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -75.71 396.97 2.72 -72.99 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.88 Total: 15.26 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.59 Total: 12.08 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.84 Total: -111.50 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.94 Total: -36.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.71 2.72 -72.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049091585.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.103 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds