Wall clock time and date at job start Tue Mar 31 2020 19:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 H 1.08996 * 110.53914 * 51.98770 * 3 2 1 5 5 C 1.55132 * 110.52181 * 289.20710 * 3 2 1 6 6 C 1.54998 * 102.09195 * 220.39976 * 5 3 2 7 7 O 1.44382 * 103.49281 * 37.10064 * 6 5 3 8 8 C 1.43741 * 106.97588 * 319.94795 * 7 6 5 9 9 H 1.09002 * 109.87340 * 266.93156 * 8 7 6 10 10 C 1.50698 * 109.87937 * 145.93747 * 8 7 6 11 11 O 1.21285 * 119.99629 * 341.04306 * 10 8 7 12 12 N 1.34775 * 120.00309 * 161.05045 * 10 8 7 13 13 C 1.46942 * 120.71773 * 4.25012 * 12 10 8 14 14 C 1.53193 * 108.89961 * 234.35789 * 13 12 10 15 15 C 1.53175 * 109.27401 * 304.61206 * 14 13 12 16 16 C 1.52058 * 109.74152 * 59.92366 * 15 14 13 17 17 C 1.54364 * 110.58706 * 177.70904 * 16 15 14 18 18 C 1.54466 * 102.86880 * 207.24224 * 17 16 15 19 19 N 1.47080 * 107.29882 * 21.47521 * 18 17 16 20 20 C 1.36941 * 125.62825 * 180.98075 * 19 18 17 21 21 H 1.08002 * 119.99655 * 174.85522 * 20 19 18 22 22 C 1.38807 * 119.99923 * 354.86345 * 20 19 18 23 23 N 1.31616 * 120.00254 * 157.91387 * 22 20 19 24 24 Si 1.86802 * 120.00008 * 337.90642 * 22 20 19 25 25 H 1.48496 * 109.47340 * 185.37591 * 24 22 20 26 26 H 1.48500 * 109.47179 * 305.37806 * 24 22 20 27 27 H 1.48500 * 109.46901 * 65.37470 * 24 22 20 28 28 C 1.47583 * 108.74376 * 1.24662 * 19 18 17 29 29 C 1.47097 * 120.72308 * 184.27349 * 12 10 8 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47365 * 300.00032 * 1 2 3 32 32 H 1.09001 * 109.47113 * 60.00242 * 1 2 3 33 33 H 1.09004 * 109.47365 * 239.99968 * 2 1 3 34 34 H 1.09001 * 109.47113 * 119.99758 * 2 1 3 35 35 H 1.08994 * 110.83458 * 102.23071 * 5 3 2 36 36 H 1.08998 * 111.01089 * 338.63723 * 5 3 2 37 37 H 1.09002 * 110.61566 * 278.60636 * 6 5 3 38 38 H 1.08999 * 110.62185 * 155.61230 * 6 5 3 39 39 H 1.09000 * 109.56938 * 114.53091 * 13 12 10 40 40 H 1.09001 * 109.56695 * 354.18386 * 13 12 10 41 41 H 1.09001 * 109.50262 * 184.66514 * 14 13 12 42 42 H 1.08999 * 109.50078 * 64.54889 * 14 13 12 43 43 H 1.09005 * 109.42884 * 299.83730 * 15 14 13 44 44 H 1.09001 * 109.37863 * 179.97438 * 15 14 13 45 45 H 1.08998 * 110.73563 * 88.89812 * 17 16 15 46 46 H 1.08998 * 110.73569 * 325.58188 * 17 16 15 47 47 H 1.08995 * 109.87590 * 262.04657 * 18 17 16 48 48 H 1.08996 * 109.87775 * 140.89970 * 18 17 16 49 49 H 0.97001 * 119.99652 * 354.96959 * 23 22 20 50 50 H 1.08999 * 110.37755 * 95.27814 * 28 19 18 51 51 H 1.09002 * 110.37749 * 217.62387 * 28 19 18 52 52 H 1.09005 * 109.56428 * 7.92593 * 29 12 10 53 53 H 1.08996 * 109.56935 * 247.58300 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5748 2.0126 0.8042 5 6 1.7706 2.1146 -1.3720 6 6 3.0746 2.9208 -1.6002 7 8 4.1018 2.0581 -1.0662 8 6 3.5746 1.4720 0.1357 9 1 3.8590 2.0753 0.9978 10 6 4.1020 0.0694 0.2959 11 8 4.5607 -0.5188 -0.6605 12 7 4.0638 -0.5314 1.5017 13 6 3.4280 0.1296 2.6498 14 6 4.4311 0.1892 3.8061 15 6 4.9332 -1.2249 4.1133 16 6 5.6108 -1.8079 2.8832 17 6 6.1752 -3.2119 3.1886 18 6 7.3520 -3.3330 2.1954 19 7 7.7391 -1.9682 1.8073 20 6 8.7335 -1.6417 0.9243 21 1 8.8872 -0.6108 0.6412 22 6 9.5439 -2.6356 0.3930 23 7 10.1841 -2.4282 -0.7381 24 14 9.7259 -4.2676 1.2836 25 1 10.7376 -5.1017 0.5866 26 1 10.1641 -4.0227 2.6812 27 1 8.4206 -4.9757 1.2909 28 6 6.8832 -1.0085 2.5315 29 6 4.6582 -1.8626 1.6972 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 0.9077 2.7782 -1.3159 36 1 1.6339 1.3670 -2.1533 37 1 3.0433 3.8638 -1.0543 38 1 3.2358 3.0971 -2.6637 39 1 2.5497 -0.4380 2.9574 40 1 3.1319 1.1408 2.3709 41 1 3.9441 0.6026 4.6893 42 1 5.2734 0.8214 3.5248 43 1 4.0903 -1.8555 4.3961 44 1 5.6475 -1.1843 4.9357 45 1 5.4261 -3.9795 2.9947 46 1 6.5310 -3.2694 4.2172 47 1 7.0377 -3.8936 1.3151 48 1 8.1923 -3.8342 2.6758 49 1 10.0334 -1.6105 -1.2377 50 1 7.3813 -0.6647 3.4380 51 1 6.6343 -0.1629 1.8903 52 1 5.2072 -2.1524 0.8012 53 1 3.8700 -2.5889 1.8952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054148285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:29 Heat of formation + Delta-G solvation = -70.817246 kcal Electronic energy + Delta-G solvation = -32404.292229 eV Core-core repulsion = 28468.715156 eV Total energy + Delta-G solvation = -3935.577073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.18282 -40.77868 -39.15765 -37.50572 -35.84319 -34.92102 -33.49428 -32.25412 -31.35982 -30.78860 -30.08395 -27.66749 -26.64768 -25.24710 -24.61116 -23.70496 -22.99955 -22.61721 -21.94213 -20.40720 -19.55900 -19.29777 -18.33853 -17.66821 -17.50098 -17.05047 -16.77528 -16.26982 -15.76863 -15.70907 -15.66945 -15.38394 -15.12325 -15.05338 -14.70472 -14.50352 -14.38073 -14.03200 -13.90179 -13.59714 -13.50257 -13.37942 -13.12631 -13.05449 -12.93427 -12.61310 -12.54461 -12.24064 -12.12813 -12.11744 -11.91889 -11.79209 -11.67873 -11.58362 -11.55376 -11.44501 -11.31569 -11.11474 -10.93065 -10.62289 -10.41277 -9.61778 -9.14869 -8.73267 -5.46906 1.35209 1.46069 1.47521 1.68540 1.87930 2.53171 2.94846 3.01076 3.27090 3.32059 3.41493 3.56384 3.62870 3.74738 3.79927 3.93241 4.04286 4.11104 4.14767 4.18358 4.20879 4.31443 4.35608 4.40383 4.43636 4.48630 4.61143 4.67124 4.68546 4.70592 4.73984 4.76099 4.80763 4.84257 4.90977 4.92528 4.95030 5.05689 5.08538 5.09617 5.16585 5.18737 5.20913 5.24219 5.40952 5.41432 5.45845 5.52121 5.54446 5.80232 6.03622 6.40106 6.78736 7.18056 7.44087 8.06486 8.78690 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.004116 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.280474 B = 6801.203216 C = 7812.234459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C -0.098 4.098 4 H 0.138 0.862 5 C -0.141 4.141 6 C 0.034 3.966 7 O -0.400 6.400 8 C 0.060 3.940 9 H 0.110 0.890 10 C 0.509 3.491 11 O -0.587 6.587 12 N -0.603 5.603 13 C 0.097 3.903 14 C -0.135 4.135 15 C -0.094 4.094 16 C -0.074 4.074 17 C -0.106 4.106 18 C 0.102 3.898 19 N -0.632 5.632 20 C -0.313 4.313 21 H 0.027 0.973 22 C -0.083 4.083 23 N -0.960 5.960 24 Si 1.107 2.893 25 H -0.311 1.311 26 H -0.279 1.279 27 H -0.246 1.246 28 C 0.152 3.848 29 C 0.136 3.864 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.042 0.958 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.020 0.980 48 H 0.025 0.975 49 H 0.241 0.759 50 H 0.028 0.972 51 H 0.007 0.993 52 H 0.037 0.963 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.809 8.785 13.897 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C -0.116 4.116 4 H 0.156 0.844 5 C -0.179 4.179 6 C -0.042 4.042 7 O -0.319 6.319 8 C -0.001 4.001 9 H 0.128 0.872 10 C 0.298 3.702 11 O -0.466 6.466 12 N -0.337 5.337 13 C -0.023 4.023 14 C -0.173 4.173 15 C -0.132 4.132 16 C -0.076 4.076 17 C -0.144 4.144 18 C -0.022 4.022 19 N -0.359 5.359 20 C -0.442 4.442 21 H 0.045 0.955 22 C -0.275 4.275 23 N -0.604 5.604 24 Si 0.933 3.067 25 H -0.240 1.240 26 H -0.206 1.206 27 H -0.170 1.170 28 C 0.027 3.973 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.038 0.962 48 H 0.043 0.957 49 H 0.050 0.950 50 H 0.046 0.954 51 H 0.025 0.975 52 H 0.056 0.944 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -27.542 7.066 13.209 31.352 hybrid contribution 0.627 1.806 -1.286 2.304 sum -26.915 8.872 11.923 30.746 Atomic orbital electron populations 1.21694 0.92670 1.02142 1.03141 1.21813 0.98444 0.94912 1.01569 1.22723 0.89925 0.98351 1.00619 0.84408 1.23296 0.98900 0.99690 0.95974 1.23928 0.86115 0.93761 1.00392 1.89020 1.40176 1.62335 1.40419 1.23023 0.96262 0.90515 0.90309 0.87238 1.21062 0.77602 0.88839 0.82710 1.90739 1.47548 1.67189 1.41137 1.48190 1.57148 1.18844 1.09506 1.22236 0.96255 0.99183 0.84639 1.22004 0.98912 0.97122 0.99265 1.21348 1.01029 0.96545 0.94255 1.21455 0.93601 0.95949 0.96561 1.22609 0.95957 0.96555 0.99248 1.22155 0.96782 0.86663 0.96576 1.44933 1.38516 1.02316 1.50158 1.19918 1.11448 0.93562 1.19244 0.95477 1.27272 0.96410 1.06533 0.97319 1.71001 1.48692 1.27074 1.13592 0.83503 0.76738 0.72535 0.73931 1.23966 1.20562 1.17049 1.21629 0.90474 0.91863 0.93332 1.21243 0.95771 0.84212 0.97486 0.92946 0.90038 0.92302 0.95637 0.90625 0.85963 0.92105 0.89123 0.88854 0.87499 0.88118 0.86465 0.93888 0.88075 0.90546 0.87838 0.88142 0.96175 0.95719 0.95023 0.95425 0.97471 0.94391 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.80 71.98 0.71 -0.91 16 2 C -0.13 -2.41 4.14 30.59 0.13 -2.29 16 3 C -0.10 -1.57 2.41 -9.69 -0.02 -1.60 16 4 H 0.14 1.00 8.13 -2.39 -0.02 0.98 16 5 C -0.14 -2.22 6.07 32.01 0.19 -2.02 16 6 C 0.03 0.69 7.72 72.67 0.56 1.25 16 7 O -0.40 -13.54 10.80 -131.01 -1.42 -14.95 16 8 C 0.06 1.58 2.91 30.22 0.09 1.67 16 9 H 0.11 2.30 6.80 -2.39 -0.02 2.28 16 10 C 0.51 18.28 4.95 87.66 0.43 18.71 16 11 O -0.59 -29.84 16.04 14.92 0.24 -29.60 16 12 N -0.60 -16.78 1.87 -820.28 -1.54 -18.32 16 13 C 0.10 1.44 4.93 86.36 0.43 1.86 16 14 C -0.14 -2.01 5.93 30.72 0.18 -1.83 16 15 C -0.09 -1.65 4.64 30.34 0.14 -1.51 16 16 C -0.07 -2.18 0.54 -51.84 -0.03 -2.21 16 17 C -0.11 -3.10 5.89 31.56 0.19 -2.92 16 18 C 0.10 4.56 4.29 86.77 0.37 4.94 16 19 N -0.63 -34.00 3.28 -692.31 -2.27 -36.27 16 20 C -0.31 -20.65 10.51 84.03 0.88 -19.77 16 21 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 22 C -0.08 -5.52 5.48 84.86 0.46 -5.05 16 23 N -0.96 -68.55 13.70 21.65 0.30 -68.25 16 24 Si 1.11 58.04 24.65 68.60 1.69 59.73 16 25 H -0.31 -16.60 7.11 99.48 0.71 -15.89 16 26 H -0.28 -13.52 7.04 99.48 0.70 -12.82 16 27 H -0.25 -11.36 5.21 99.48 0.52 -10.84 16 28 C 0.15 6.50 5.22 86.62 0.45 6.95 16 29 C 0.14 4.36 4.99 86.01 0.43 4.79 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.65 7.65 -2.39 -0.02 0.63 16 33 H 0.02 0.70 7.67 -2.38 -0.02 0.68 16 34 H 0.08 1.39 4.88 -2.39 -0.01 1.38 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.21 7.77 -2.39 -0.02 1.19 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 0.91 7.84 -2.39 -0.02 0.89 16 40 H 0.10 1.07 5.26 -2.39 -0.01 1.06 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 0.90 7.39 -2.39 -0.02 0.88 16 43 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 45 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 46 H 0.10 2.42 8.00 -2.39 -0.02 2.40 16 47 H 0.02 0.99 6.74 -2.39 -0.02 0.97 16 48 H 0.03 1.13 4.24 -2.39 -0.01 1.12 16 49 H 0.24 17.65 8.73 -92.71 -0.81 16.84 16 50 H 0.03 1.14 7.98 -2.39 -0.02 1.12 16 51 H 0.01 0.34 7.67 -2.39 -0.02 0.32 16 52 H 0.04 1.74 6.81 -2.38 -0.02 1.72 16 53 H 0.10 2.36 8.11 -2.39 -0.02 2.35 16 Total: -1.00 -100.78 382.93 3.25 -97.54 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.65 Total: 10.07 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.59 Total: 0.06 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -3.51 Total: -122.84 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.18 Total: -44.56 kcal Atomic # 14 Polarization: 58.04 SS G_CDS: 1.69 Total: 59.73 kcal Total: -100.78 3.25 -97.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054148285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.720 kcal (2) G-P(sol) polarization free energy of solvation -100.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds