Wall clock time and date at job start Tue Mar 31 2020 19:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47153 * 2 1 4 4 H 1.09004 * 110.32779 * 52.75573 * 3 2 1 5 5 O 1.44415 * 110.37805 * 290.38354 * 3 2 1 6 6 C 1.44642 * 105.37338 * 200.73667 * 5 3 2 7 7 C 1.54477 * 104.69773 * 40.34325 * 6 5 3 8 8 C 1.54478 * 110.37213 * 175.00031 * 3 2 1 9 9 H 1.09000 * 110.51268 * 24.16771 * 8 3 2 10 10 C 1.50705 * 110.63103 * 261.51662 * 8 3 2 11 11 O 1.21274 * 119.99544 * 3.83307 * 10 8 3 12 12 N 1.34774 * 120.00223 * 183.83468 * 10 8 3 13 13 C 1.46941 * 120.70127 * 0.02562 * 12 10 8 14 14 C 1.53179 * 108.93283 * 125.84586 * 13 12 10 15 15 C 1.53169 * 109.28000 * 55.21174 * 14 13 12 16 16 C 1.52233 * 109.64674 * 299.82653 * 15 14 13 17 17 C 1.54479 * 110.29377 * 181.99976 * 16 15 14 18 18 C 1.55030 * 101.53284 * 153.34609 * 17 16 15 19 19 N 1.47486 * 104.90199 * 323.66111 * 18 17 16 20 20 C 1.36939 * 125.65938 * 203.97597 * 19 18 17 21 21 H 1.08004 * 120.00066 * 180.02562 * 20 19 18 22 22 C 1.38823 * 119.99918 * 0.03869 * 20 19 18 23 23 N 1.31612 * 119.99690 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99715 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47210 * 60.00550 * 24 22 20 26 26 H 1.48501 * 109.46969 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47507 * 300.00074 * 24 22 20 28 28 C 1.47181 * 108.67919 * 24.01140 * 19 18 17 29 29 C 1.47070 * 120.70572 * 179.72050 * 12 10 8 30 30 H 1.08995 * 109.46415 * 299.99352 * 1 2 3 31 31 H 1.08996 * 109.46823 * 59.99435 * 1 2 3 32 32 H 1.08996 * 109.46889 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46937 * 240.00270 * 2 1 3 34 34 H 1.08994 * 109.47306 * 120.00762 * 2 1 3 35 35 H 1.09006 * 110.33613 * 281.58701 * 6 5 3 36 36 H 1.09000 * 110.51087 * 159.18466 * 6 5 3 37 37 H 1.09002 * 110.51371 * 217.47805 * 7 6 5 38 38 H 1.08994 * 110.51108 * 94.90453 * 7 6 5 39 39 H 1.09005 * 109.55892 * 245.67574 * 13 12 10 40 40 H 1.09000 * 109.56355 * 6.00602 * 13 12 10 41 41 H 1.09005 * 109.50452 * 175.15304 * 14 13 12 42 42 H 1.09004 * 109.49952 * 295.23120 * 14 13 12 43 43 H 1.08998 * 109.43696 * 59.88187 * 15 14 13 44 44 H 1.08995 * 109.44334 * 179.77449 * 15 14 13 45 45 H 1.09002 * 111.01398 * 271.40731 * 17 16 15 46 46 H 1.09000 * 111.01234 * 35.28349 * 17 16 15 47 47 H 1.08993 * 110.35649 * 204.80042 * 18 17 16 48 48 H 1.08999 * 110.35241 * 82.51230 * 18 17 16 49 49 H 0.97003 * 119.99402 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.90891 * 239.10044 * 28 19 18 51 51 H 1.09001 * 109.91084 * 117.82900 * 28 19 18 52 52 H 1.09003 * 109.57833 * 352.25511 * 29 12 10 53 53 H 1.09003 * 109.58342 * 112.65299 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0057 0.8137 5 8 1.7631 2.0737 -1.2690 6 6 2.6827 3.1871 -1.3522 7 6 4.0108 2.6420 -0.7818 8 6 3.5794 1.4686 0.1262 9 1 4.0079 0.5320 -0.2307 10 6 3.9910 1.7260 1.5529 11 8 3.1485 1.8090 2.4214 12 7 5.2951 1.8641 1.8637 13 6 6.3285 1.7670 0.8236 14 6 7.2004 3.0257 0.8703 15 6 7.7635 3.1987 2.2842 16 6 6.6185 3.3415 3.2772 17 6 7.1702 3.5672 4.7023 18 6 6.0066 4.3483 5.3651 19 7 5.4744 5.2148 4.2968 20 6 4.7826 6.3814 4.4856 21 1 4.4331 6.9458 3.6337 22 6 4.5309 6.8387 5.7719 23 7 4.9575 6.1513 6.8099 24 14 3.5878 8.4305 6.0292 25 1 2.2385 8.3104 5.4207 26 1 3.4533 8.6964 7.4840 27 1 4.3223 9.5503 5.3877 28 6 5.8095 4.6170 2.9943 29 6 5.7136 2.1218 3.2499 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.3240 4.0207 -0.7483 36 1 2.8140 3.4974 -2.3888 37 1 4.5195 3.4094 -0.1983 38 1 4.6543 2.2859 -1.5861 39 1 6.9470 0.8879 1.0046 40 1 5.8551 1.6870 -0.1549 41 1 8.0221 2.9257 0.1610 42 1 6.5978 3.8956 0.6089 43 1 8.3633 2.3268 2.5449 44 1 8.3876 4.0916 2.3193 45 1 7.3427 2.6179 5.2095 46 1 8.0801 4.1669 4.6787 47 1 6.3783 4.9520 6.1930 48 1 5.2370 3.6592 5.7129 49 1 4.7819 6.4711 7.7087 50 1 6.4088 5.3144 2.4090 51 1 4.8961 4.3653 2.4554 52 1 4.8352 2.3066 3.8683 53 1 6.2578 1.2588 3.6336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054168100.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:42 Heat of formation + Delta-G solvation = -81.659020 kcal Electronic energy + Delta-G solvation = -31956.570833 eV Core-core repulsion = 28020.523625 eV Total energy + Delta-G solvation = -3936.047208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07559 -40.62766 -39.18298 -37.36990 -35.01650 -34.54094 -33.48614 -33.14202 -31.77403 -30.00224 -29.40037 -27.57758 -26.84316 -25.53672 -24.68193 -23.25606 -23.02085 -22.26993 -21.93212 -20.46149 -19.23384 -18.96981 -18.17762 -17.50310 -17.09771 -16.92050 -16.73823 -16.38675 -15.98572 -15.78434 -15.56448 -15.00209 -14.81751 -14.61732 -14.44298 -14.27087 -14.20243 -14.04880 -13.92481 -13.84404 -13.46009 -13.30887 -13.06312 -12.92790 -12.75994 -12.58254 -12.46906 -12.36251 -12.15637 -12.06480 -11.95174 -11.89409 -11.82395 -11.75366 -11.70646 -11.55379 -11.30385 -11.05652 -10.82490 -10.76998 -10.67035 -9.61413 -8.91619 -7.81309 -5.25375 1.39202 1.43572 1.49707 1.54285 1.94490 2.45173 2.80335 3.26973 3.43688 3.50029 3.52795 3.65302 3.71070 3.82335 3.95873 3.99051 4.06991 4.13494 4.16469 4.19352 4.23566 4.33296 4.39127 4.48564 4.52493 4.62630 4.66853 4.72191 4.73669 4.77808 4.80735 4.83245 4.85697 4.92443 4.94518 4.98172 4.99733 5.04090 5.09219 5.15958 5.18597 5.22152 5.35239 5.37927 5.47843 5.51060 5.52945 5.62573 5.77818 5.79876 6.27632 6.42333 7.07291 7.14584 7.75530 8.39677 9.20157 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.003945 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.076726 B = 7096.724469 C = 8315.532550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.086 3.914 4 H 0.044 0.956 5 O -0.377 6.377 6 C 0.038 3.962 7 C -0.141 4.141 8 C -0.129 4.129 9 H 0.144 0.856 10 C 0.512 3.488 11 O -0.591 6.591 12 N -0.601 5.601 13 C 0.096 3.904 14 C -0.133 4.133 15 C -0.096 4.096 16 C -0.072 4.072 17 C -0.119 4.119 18 C 0.155 3.845 19 N -0.626 5.626 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.065 4.065 23 N -0.947 5.947 24 Si 0.978 3.022 25 H -0.285 1.285 26 H -0.288 1.288 27 H -0.271 1.271 28 C 0.158 3.842 29 C 0.136 3.864 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.071 0.929 48 H -0.027 1.027 49 H 0.247 0.753 50 H 0.024 0.976 51 H -0.005 1.005 52 H 0.042 0.958 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -14.666 -20.249 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.028 3.972 4 H 0.062 0.938 5 O -0.297 6.297 6 C -0.038 4.038 7 C -0.178 4.178 8 C -0.150 4.150 9 H 0.162 0.838 10 C 0.301 3.699 11 O -0.471 6.471 12 N -0.333 5.333 13 C -0.025 4.025 14 C -0.170 4.170 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.157 4.157 18 C 0.030 3.970 19 N -0.352 5.352 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.258 4.258 23 N -0.596 5.596 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.214 1.214 27 H -0.197 1.197 28 C 0.033 3.967 29 C 0.013 3.987 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.089 0.911 48 H -0.009 1.009 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.013 0.987 52 H 0.061 0.939 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.384 -14.562 -19.808 25.167 hybrid contribution -1.045 1.461 1.359 2.253 sum 4.339 -13.101 -18.448 23.039 Atomic orbital electron populations 1.21704 0.95178 1.02373 1.01343 1.21544 0.97035 0.92860 1.03251 1.22878 0.92426 0.95824 0.86119 0.93750 1.89123 1.59515 1.44210 1.36824 1.23610 0.87920 0.89033 1.03286 1.23113 0.98933 0.96239 0.99528 1.22732 0.97702 1.03427 0.91145 0.83802 1.21013 0.82092 0.75564 0.91243 1.90724 1.51761 1.52725 1.51883 1.48186 1.06078 1.69748 1.09283 1.22270 0.89545 0.99394 0.91295 1.21985 1.00327 0.97506 0.97223 1.21390 0.95182 1.03218 0.93584 1.21215 0.96003 0.93234 0.96841 1.22847 0.97890 1.00316 0.94688 1.21719 0.91792 0.91044 0.92419 1.44873 1.64704 1.23553 1.02058 1.19357 1.27395 0.97942 0.92533 0.91027 1.25614 1.02535 1.02511 0.95105 1.70056 1.51766 1.40309 0.97519 0.85162 0.78271 0.79387 0.76589 1.21173 1.21416 1.19694 1.21279 0.94864 0.93078 0.87474 1.21175 0.97670 0.96923 0.82910 0.94410 0.92420 0.90836 0.88926 0.91031 0.94391 0.85668 0.91020 0.85208 0.88428 0.87060 0.86822 0.93082 0.89022 0.91646 0.89520 0.90767 0.91094 1.00903 0.94316 0.95845 0.98747 0.93933 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.85 71.98 0.71 -2.43 16 2 C -0.11 -2.30 5.56 30.59 0.17 -2.13 16 3 C 0.09 2.21 2.58 31.10 0.08 2.29 16 4 H 0.04 1.55 6.97 -2.38 -0.02 1.53 16 5 O -0.38 -9.26 11.13 -148.98 -1.66 -10.92 16 6 C 0.04 0.77 7.65 72.48 0.55 1.32 16 7 C -0.14 -2.38 4.88 31.61 0.15 -2.22 16 8 C -0.13 -2.74 2.14 -10.52 -0.02 -2.76 16 9 H 0.14 2.01 7.73 -2.39 -0.02 2.00 16 10 C 0.51 15.82 6.92 87.66 0.61 16.42 16 11 O -0.59 -25.51 14.92 -3.01 -0.04 -25.55 16 12 N -0.60 -15.83 2.59 -820.97 -2.12 -17.95 16 13 C 0.10 1.41 5.59 86.36 0.48 1.90 16 14 C -0.13 -2.12 5.92 30.71 0.18 -1.93 16 15 C -0.10 -2.06 4.52 30.40 0.14 -1.93 16 16 C -0.07 -2.34 0.54 -52.07 -0.03 -2.37 16 17 C -0.12 -4.35 5.99 31.79 0.19 -4.16 16 18 C 0.16 8.10 5.58 86.89 0.49 8.59 16 19 N -0.63 -34.64 3.40 -692.48 -2.36 -37.00 16 20 C -0.24 -14.70 10.28 84.04 0.86 -13.83 16 21 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.07 -3.92 5.49 84.87 0.47 -3.45 16 23 N -0.95 -59.34 10.09 21.65 0.22 -59.12 16 24 Si 0.98 48.34 29.55 68.60 2.03 50.36 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 28 C 0.16 6.91 5.42 86.47 0.47 7.38 16 29 C 0.14 4.44 4.85 85.91 0.42 4.85 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.23 8.01 -2.39 -0.02 1.21 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.47 6.75 -2.39 -0.02 1.46 16 38 H 0.13 1.09 7.62 -2.39 -0.02 1.07 16 39 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.11 1.10 4.38 -2.39 -0.01 1.08 16 41 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.05 1.04 6.84 -2.39 -0.02 1.03 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 45 H 0.09 2.70 7.97 -2.39 -0.02 2.68 16 46 H 0.07 2.59 8.02 -2.39 -0.02 2.57 16 47 H 0.07 4.17 5.88 -2.39 -0.01 4.16 16 48 H -0.03 -1.57 7.90 -2.39 -0.02 -1.59 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.02 1.00 7.61 -2.39 -0.02 0.98 16 51 H -0.01 -0.26 7.54 -2.39 -0.02 -0.28 16 52 H 0.04 1.89 6.56 -2.39 -0.02 1.87 16 53 H 0.09 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -82.90 392.16 2.86 -80.04 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.88 Total: 14.60 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.92 Total: 5.54 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -4.26 Total: -114.06 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.70 Total: -36.47 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -82.90 2.86 -80.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054168100.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.616 kcal (2) G-P(sol) polarization free energy of solvation -82.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds