Wall clock time and date at job start Tue Mar 31 2020 19:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 H 1.09002 * 109.48348 * 305.02623 * 3 2 1 5 5 C 1.53091 * 109.48431 * 185.00218 * 3 2 1 6 6 C 1.53178 * 109.15942 * 297.62727 * 5 3 2 7 7 H 1.08999 * 109.54430 * 62.97919 * 6 5 3 8 8 C 1.53008 * 109.54176 * 183.14732 * 6 5 3 9 9 C 1.50700 * 109.47111 * 184.99820 * 8 6 5 10 10 O 1.21283 * 120.00149 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99739 * 180.02562 * 9 8 6 12 12 C 1.47894 * 134.33805 * 179.97438 * 11 9 8 13 13 C 1.52376 * 85.58913 * 156.48205 * 12 11 9 14 14 C 1.47883 * 134.34561 * 359.95563 * 11 9 8 15 15 C 1.53653 * 116.39794 * 141.34820 * 13 12 11 16 16 C 1.54596 * 102.73094 * 162.91720 * 15 13 12 17 17 N 1.47136 * 107.36927 * 339.24800 * 16 15 13 18 18 C 1.36936 * 125.59134 * 179.07797 * 17 16 15 19 19 H 1.07999 * 120.00254 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99624 * 359.97258 * 18 17 16 21 21 N 1.31617 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99742 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47535 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47430 * 119.99935 * 22 20 18 25 25 H 1.48500 * 109.47061 * 239.99822 * 22 20 18 26 26 C 1.47728 * 108.82085 * 359.07069 * 17 16 15 27 27 C 1.53175 * 109.04139 * 303.01519 * 6 5 3 28 28 C 1.53096 * 109.15841 * 56.97914 * 27 6 5 29 29 O 1.42900 * 109.41911 * 302.39339 * 28 27 6 30 30 H 1.09002 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46982 * 299.99607 * 1 2 3 32 32 H 1.08997 * 109.47484 * 59.99862 * 1 2 3 33 33 H 1.09005 * 109.47209 * 240.00623 * 2 1 3 34 34 H 1.08997 * 109.47484 * 120.00138 * 2 1 3 35 35 H 1.08997 * 109.52467 * 177.72041 * 5 3 2 36 36 H 1.09001 * 109.52309 * 57.53205 * 5 3 2 37 37 H 1.09004 * 109.46427 * 65.00282 * 8 6 5 38 38 H 1.08994 * 109.47209 * 305.00038 * 8 6 5 39 39 H 1.09001 * 113.85435 * 42.31936 * 12 11 9 40 40 H 1.08993 * 113.97477 * 270.66026 * 12 11 9 41 41 H 1.09003 * 113.85344 * 89.35264 * 14 11 9 42 42 H 1.09002 * 113.85409 * 317.68648 * 14 11 9 43 43 H 1.09001 * 110.75727 * 281.23132 * 15 13 12 44 44 H 1.09005 * 110.75532 * 44.61030 * 15 13 12 45 45 H 1.09003 * 109.86592 * 98.69506 * 16 15 13 46 46 H 1.09001 * 109.86694 * 219.66416 * 16 15 13 47 47 H 0.96996 * 119.99815 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.40302 * 263.65814 * 26 17 16 49 49 H 1.09012 * 110.39169 * 141.24794 * 26 17 16 50 50 H 1.08997 * 109.52805 * 176.88537 * 27 6 5 51 51 H 1.09004 * 109.52326 * 297.08040 * 27 6 5 52 52 H 1.08998 * 109.47562 * 182.40856 * 28 27 6 53 53 H 1.08997 * 109.47581 * 62.37972 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9819 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.1714 0.7375 1.0904 7 1 3.8517 -0.3045 1.1030 8 6 5.6981 0.8034 1.0129 9 6 6.2935 0.0033 2.1427 10 8 5.5682 -0.5642 2.9319 11 7 7.6319 -0.0816 2.2761 12 6 8.5344 -0.7564 3.2339 13 6 9.5701 -0.6985 2.1177 14 6 8.7823 0.4625 1.5228 15 6 11.0157 -0.3963 2.5421 16 6 11.8333 -0.8425 1.3083 17 7 10.9954 -1.7772 0.5407 18 6 11.3502 -2.3853 -0.6339 19 1 10.6619 -3.0588 -1.1227 20 6 12.5947 -2.1359 -1.1962 21 7 13.4333 -1.3147 -0.6007 22 14 13.0784 -2.9648 -2.7988 23 1 11.9670 -3.8340 -3.2617 24 1 13.3591 -1.9301 -3.8263 25 1 14.2940 -3.7898 -2.5821 26 6 9.7087 -1.9523 1.2449 27 6 3.6924 1.4379 2.3656 28 6 2.1617 1.4361 2.3952 29 8 1.6631 2.0812 1.2216 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.9263 2.4725 -0.1666 36 1 3.8569 0.9192 -1.0353 37 1 6.0214 1.8413 1.0930 38 1 6.0317 0.3913 0.0606 39 1 8.2236 -1.7680 3.4947 40 1 8.7896 -0.1511 4.1037 41 1 9.1122 1.4421 1.8688 42 1 8.6661 0.4078 0.4404 43 1 11.1487 0.6693 2.7290 44 1 11.2908 -0.9810 3.4199 45 1 12.0799 0.0237 0.6943 46 1 12.7479 -1.3405 1.6303 47 1 14.3027 -1.1402 -0.9939 48 1 9.7345 -2.8472 1.8667 49 1 8.8886 -2.0095 0.5290 50 1 4.0742 0.9075 3.2380 51 1 4.0556 2.4656 2.3752 52 1 1.8147 1.9708 3.2793 53 1 1.8001 0.4083 2.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073108654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:41 Heat of formation + Delta-G solvation = -53.272908 kcal Electronic energy + Delta-G solvation = -30188.032860 eV Core-core repulsion = 26253.216567 eV Total energy + Delta-G solvation = -3934.816294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84974 -40.97299 -39.49402 -37.23601 -35.54563 -34.33663 -34.10545 -31.65981 -31.11567 -30.49579 -29.14415 -27.45593 -27.27041 -25.56927 -24.68156 -24.32949 -22.86480 -22.09463 -20.37901 -20.06718 -19.51793 -18.80038 -17.93118 -17.38293 -17.13829 -16.86879 -16.73008 -16.68573 -16.03262 -15.84676 -15.57285 -15.40364 -15.00281 -14.55409 -14.49581 -14.21377 -13.92352 -13.86774 -13.69848 -13.60825 -13.46334 -13.21680 -12.95482 -12.83858 -12.80409 -12.78996 -12.52703 -12.40640 -12.17075 -11.98236 -11.93656 -11.90308 -11.76973 -11.69330 -11.66092 -11.46997 -11.27929 -11.00022 -10.68860 -10.57735 -10.25354 -9.67164 -8.87469 -7.83686 -5.18400 1.46807 1.47596 1.57397 1.64815 1.83722 2.49667 2.96274 3.27793 3.36072 3.48080 3.65551 3.71076 3.75134 3.78108 3.86459 4.04400 4.11760 4.15909 4.20701 4.27038 4.36186 4.39490 4.47748 4.48842 4.58449 4.61002 4.62669 4.65478 4.72259 4.77094 4.78522 4.82377 4.88546 4.89159 4.97550 4.98409 5.01656 5.09434 5.11204 5.13191 5.14228 5.22326 5.25174 5.34851 5.38902 5.45525 5.47419 5.73215 5.83207 6.22339 6.33473 6.74002 7.13290 7.16505 7.79185 8.42997 9.26269 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002412 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.274921 B =11604.905965 C =12723.222036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.088 3.912 4 H 0.113 0.887 5 C -0.141 4.141 6 C -0.069 4.069 7 H 0.064 0.936 8 C -0.126 4.126 9 C 0.529 3.471 10 O -0.581 6.581 11 N -0.644 5.644 12 C 0.127 3.873 13 C -0.099 4.099 14 C 0.129 3.871 15 C -0.113 4.113 16 C 0.184 3.816 17 N -0.625 5.625 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.973 3.027 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.160 3.840 27 C -0.148 4.148 28 C 0.060 3.940 29 O -0.389 6.389 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.017 0.983 46 H 0.004 0.996 47 H 0.247 0.753 48 H 0.021 0.979 49 H 0.033 0.967 50 H 0.070 0.930 51 H 0.067 0.933 52 H 0.099 0.901 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.478 8.675 4.591 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.031 3.969 4 H 0.131 0.869 5 C -0.179 4.179 6 C -0.088 4.088 7 H 0.083 0.917 8 C -0.165 4.165 9 C 0.321 3.679 10 O -0.462 6.462 11 N -0.378 5.378 12 C 0.005 3.995 13 C -0.100 4.100 14 C 0.008 3.992 15 C -0.152 4.152 16 C 0.060 3.940 17 N -0.351 5.351 18 C -0.368 4.368 19 H 0.095 0.905 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.217 1.217 25 H -0.221 1.221 26 C 0.035 3.965 27 C -0.186 4.186 28 C -0.016 4.016 29 O -0.308 6.308 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.022 0.978 47 H 0.056 0.944 48 H 0.038 0.962 49 H 0.052 0.948 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.117 0.883 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.036 8.540 4.837 23.213 hybrid contribution 1.109 -1.025 -0.829 1.723 sum -19.926 7.516 4.008 21.671 Atomic orbital electron populations 1.21678 0.94819 1.01673 1.02128 1.22198 0.97292 0.97267 1.02910 1.22337 0.93745 0.93449 0.87362 0.86902 1.22249 0.95706 1.01887 0.98012 1.20909 0.92525 0.99936 0.95448 0.91717 1.21710 0.96258 1.01477 0.97058 1.20875 0.80038 0.80541 0.86479 1.90627 1.59555 1.49096 1.46920 1.50335 1.03803 1.51974 1.31695 1.22996 0.84602 0.98469 0.93444 1.22293 0.94868 0.96410 0.96455 1.23102 0.80641 0.97666 0.97838 1.22526 0.92544 1.02365 0.97751 1.20991 0.91570 0.91643 0.89838 1.44851 1.13962 1.52361 1.23942 1.19404 0.99207 1.20407 0.97777 0.90530 1.25559 0.96860 1.00857 1.02291 1.70170 1.08446 1.40302 1.40740 0.85083 0.77706 0.77571 0.79410 1.19330 1.21730 1.22148 1.21123 0.87797 0.94435 0.93177 1.22249 0.96735 1.00839 0.98760 1.22567 0.92923 0.97907 0.88250 1.87941 1.74937 1.53670 1.14274 0.92525 0.93149 0.91932 0.90205 0.92272 0.90361 0.89594 0.87302 0.88050 0.90850 0.87086 0.86767 0.90301 0.88670 0.90418 0.96446 0.97816 0.94403 0.96155 0.94821 0.91112 0.91404 0.88327 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.81 71.98 0.71 -1.38 16 2 C -0.16 -2.49 4.74 30.59 0.15 -2.35 16 3 C 0.09 1.42 3.29 30.63 0.10 1.52 16 4 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 5 C -0.14 -2.19 4.93 30.68 0.15 -2.04 16 6 C -0.07 -1.36 1.61 -10.67 -0.02 -1.38 16 7 H 0.06 1.50 6.55 -2.39 -0.02 1.49 16 8 C -0.13 -2.52 4.92 29.85 0.15 -2.37 16 9 C 0.53 14.33 7.79 87.66 0.68 15.01 16 10 O -0.58 -19.38 14.73 -3.04 -0.04 -19.42 16 11 N -0.64 -16.68 3.62 -863.54 -3.12 -19.80 16 12 C 0.13 3.19 8.21 85.91 0.71 3.89 16 13 C -0.10 -2.89 0.99 -52.15 -0.05 -2.94 16 14 C 0.13 3.20 7.92 85.91 0.68 3.88 16 15 C -0.11 -3.52 6.36 31.36 0.20 -3.32 16 16 C 0.18 8.45 5.39 86.80 0.47 8.91 16 17 N -0.62 -30.62 3.41 -693.33 -2.36 -32.98 16 18 C -0.24 -13.05 10.28 84.03 0.86 -12.19 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 21 N -0.95 -55.27 10.30 21.65 0.22 -55.05 16 22 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C 0.16 6.22 6.63 86.28 0.57 6.79 16 27 C -0.15 -3.04 5.13 30.68 0.16 -2.88 16 28 C 0.06 1.14 6.52 72.01 0.47 1.61 16 29 O -0.39 -7.72 10.13 -148.98 -1.51 -9.23 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.80 7.82 -2.39 -0.02 0.79 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 1.09 4.98 -2.39 -0.01 1.08 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 40 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.11 2.23 8.04 -2.39 -0.02 2.21 16 42 H 0.08 2.11 8.12 -2.39 -0.02 2.10 16 43 H 0.09 2.41 7.99 -2.39 -0.02 2.39 16 44 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 46 H 0.00 0.19 7.49 -2.39 -0.02 0.17 16 47 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 50 H 0.07 1.77 6.07 -2.39 -0.01 1.76 16 51 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.05 0.97 6.23 -2.39 -0.01 0.96 16 Total: -1.00 -68.37 401.93 2.52 -65.84 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.87 Total: 15.92 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.45 Total: 7.77 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -5.26 Total: -107.83 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.55 Total: -28.65 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.37 2.52 -65.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073108654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.571 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds