Wall clock time and date at job start Tue Mar 31 2020 19:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47579 * 2 1 4 4 H 1.09002 * 109.87256 * 55.80915 * 3 2 1 5 5 C 1.54327 * 109.88095 * 294.79486 * 3 2 1 6 6 H 1.08999 * 110.71910 * 336.77578 * 5 3 2 7 7 N 1.46501 * 110.71959 * 99.86675 * 5 3 2 8 8 C 1.34776 * 120.00080 * 204.99681 * 7 5 3 9 9 O 1.21279 * 119.99765 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.53866 * 113.60148 * 180.02562 * 10 8 7 12 12 C 1.53307 * 86.94922 * 220.25401 * 11 10 8 13 13 C 1.53326 * 87.54945 * 25.17761 * 12 11 10 14 14 C 1.52832 * 113.64938 * 139.93281 * 12 11 10 15 15 C 1.53271 * 108.87984 * 184.15180 * 14 12 11 16 16 O 1.42891 * 109.31848 * 304.69766 * 15 14 12 17 17 C 1.42899 * 114.36993 * 63.00331 * 16 15 14 18 18 C 1.52824 * 113.64721 * 270.41359 * 12 11 10 19 19 C 1.55153 * 102.94150 * 218.23094 * 5 3 2 20 20 C 1.54916 * 101.58135 * 35.50068 * 19 5 3 21 21 N 1.47023 * 110.01376 * 176.90616 * 3 2 1 22 22 C 1.36931 * 125.64926 * 298.39883 * 21 3 2 23 23 H 1.08001 * 120.00207 * 345.36640 * 22 21 3 24 24 C 1.38810 * 120.00098 * 165.37142 * 22 21 3 25 25 N 1.31612 * 119.99966 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00094 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47338 * 89.99569 * 26 24 22 28 28 H 1.48504 * 109.46888 * 209.99920 * 26 24 22 29 29 H 1.48501 * 109.47023 * 329.99499 * 26 24 22 30 30 H 1.08998 * 109.46970 * 65.58086 * 1 2 3 31 31 H 1.08997 * 109.47154 * 185.58501 * 1 2 3 32 32 H 1.09002 * 109.46513 * 305.58174 * 1 2 3 33 33 H 1.09002 * 109.46799 * 240.00017 * 2 1 3 34 34 H 1.09001 * 109.47428 * 120.00035 * 2 1 3 35 35 H 0.97001 * 120.00003 * 24.99957 * 7 5 3 36 36 H 1.08998 * 112.83796 * 311.15667 * 10 8 7 37 37 H 1.08996 * 113.63804 * 105.73878 * 11 10 8 38 38 H 1.09000 * 113.71204 * 334.77996 * 11 10 8 39 39 H 1.09004 * 113.63811 * 89.33382 * 13 12 11 40 40 H 1.09003 * 113.63510 * 220.30336 * 13 12 11 41 41 H 1.09004 * 109.56776 * 64.33058 * 14 12 11 42 42 H 1.09008 * 109.66881 * 304.03149 * 14 12 11 43 43 H 1.08997 * 109.49465 * 64.64946 * 15 14 12 44 44 H 1.09003 * 109.49759 * 184.74181 * 15 14 12 45 45 H 1.09003 * 109.49066 * 177.04336 * 17 16 15 46 46 H 1.08999 * 109.52011 * 56.97065 * 17 16 15 47 47 H 1.09006 * 109.57303 * 295.67127 * 18 12 11 48 48 H 1.09001 * 109.57274 * 56.03064 * 18 12 11 49 49 H 1.08994 * 111.00301 * 153.57384 * 19 5 3 50 50 H 1.08998 * 111.00305 * 277.43262 * 19 5 3 51 51 H 1.09002 * 110.36541 * 204.14875 * 20 19 5 52 52 H 1.09008 * 110.45518 * 81.87621 * 20 19 5 53 53 H 0.97003 * 120.00451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6206 1.9839 0.8479 5 6 1.6413 2.1402 -1.3175 6 1 1.4660 1.4068 -2.1045 7 7 0.4571 2.9801 -1.1214 8 6 -0.3465 3.2663 -2.1648 9 8 -0.0895 2.8280 -3.2661 10 6 -1.5643 4.1308 -1.9632 11 6 -2.3753 4.3623 -3.2500 12 6 -2.5539 5.8104 -2.7794 13 6 -1.2601 5.6389 -1.9746 14 6 -2.4429 6.8388 -3.9045 15 6 -2.5334 8.2451 -3.3017 16 8 -3.7372 8.3563 -2.5399 17 6 -3.8080 7.4753 -1.4171 18 6 -3.7921 6.0239 -1.9095 19 6 2.8845 3.0107 -1.6399 20 6 4.0370 2.1042 -1.1399 21 7 3.5084 1.4569 0.0746 22 6 4.2603 0.9533 1.1022 23 1 3.7935 0.7148 2.0465 24 6 5.6225 0.7494 0.9303 25 7 6.1913 1.0396 -0.2205 26 14 6.6484 0.0630 2.3324 27 1 6.6684 -1.4197 2.2516 28 1 8.0358 0.5830 2.2314 29 1 6.0567 0.4801 3.6290 30 1 -0.3633 0.4248 -0.9357 31 1 -0.3633 -1.0228 0.1000 32 1 -0.3632 0.5980 0.8358 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2514 3.3304 -0.2405 36 1 -2.1721 3.8143 -1.1156 37 1 -3.3065 3.7970 -3.2874 38 1 -1.7861 4.2688 -4.1623 39 1 -0.3606 5.8991 -2.5325 40 1 -1.2954 6.0994 -0.9872 41 1 -3.2571 6.6927 -4.6143 42 1 -1.4873 6.7215 -4.4158 43 1 -1.6750 8.4186 -2.6528 44 1 -2.5400 8.9845 -4.1025 45 1 -4.7294 7.6623 -0.8656 46 1 -2.9521 7.6475 -0.7645 47 1 -4.6892 5.8278 -2.4968 48 1 -3.7585 5.3487 -1.0545 49 1 2.9670 3.1923 -2.7114 50 1 2.8580 3.9496 -1.0869 51 1 4.9143 2.7044 -0.8987 52 1 4.2857 1.3549 -1.8915 53 1 7.1432 0.8967 -0.3408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087795713.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:42 Heat of formation + Delta-G solvation = -73.430320 kcal Electronic energy + Delta-G solvation = -30536.569192 eV Core-core repulsion = 26600.878807 eV Total energy + Delta-G solvation = -3935.690385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98615 -40.60112 -39.27794 -37.86726 -35.58821 -34.27515 -33.50786 -32.24908 -31.94342 -30.79375 -28.29736 -26.98396 -26.59774 -25.67720 -24.60961 -23.79329 -22.89178 -22.06980 -21.48969 -20.61234 -19.18081 -18.76916 -18.22171 -17.38177 -16.90801 -16.88406 -16.67391 -16.27617 -15.88599 -15.76870 -15.59113 -15.37408 -15.25802 -14.80983 -14.52850 -14.36168 -14.26765 -13.74845 -13.55553 -13.44157 -13.24147 -13.12428 -12.88243 -12.75758 -12.64485 -12.59087 -12.52845 -12.22839 -12.21324 -12.14561 -12.04156 -11.98422 -11.86597 -11.58071 -11.40642 -11.36214 -11.29422 -10.98017 -10.70509 -10.57945 -10.24849 -9.93955 -8.83606 -7.86192 -5.24256 1.46594 1.48145 1.56550 1.68701 2.20735 2.51678 3.03889 3.33878 3.42088 3.52936 3.55585 3.65579 3.72030 3.85365 3.91960 4.01916 4.14753 4.18381 4.21726 4.32377 4.36803 4.40815 4.43197 4.53751 4.60744 4.61502 4.65341 4.73888 4.75365 4.79844 4.84624 4.86822 4.89538 4.93874 5.00569 5.04464 5.13697 5.14501 5.16465 5.18917 5.22790 5.31854 5.41661 5.45711 5.49175 5.53479 5.57415 5.69213 5.70738 6.22771 6.35022 6.66295 7.08330 7.35105 7.76245 8.43611 9.25239 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.002406 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.987119 B =11632.714624 C =11963.485030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.054 0.946 5 C 0.156 3.844 6 H 0.072 0.928 7 N -0.700 5.700 8 C 0.521 3.479 9 O -0.587 6.587 10 C -0.127 4.127 11 C -0.108 4.108 12 C -0.075 4.075 13 C -0.109 4.109 14 C -0.138 4.138 15 C 0.061 3.939 16 O -0.405 6.405 17 C 0.056 3.944 18 C -0.127 4.127 19 C -0.140 4.140 20 C 0.182 3.818 21 N -0.613 5.613 22 C -0.232 4.232 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.975 3.025 27 H -0.289 1.289 28 H -0.297 1.297 29 H -0.265 1.265 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.413 0.587 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.040 0.960 52 H -0.009 1.009 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.915 12.514 -1.279 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.071 0.929 5 C 0.050 3.950 6 H 0.091 0.909 7 N -0.351 5.351 8 C 0.309 3.691 9 O -0.467 6.467 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.176 4.176 15 C -0.015 4.015 16 O -0.324 6.324 17 C -0.020 4.020 18 C -0.164 4.164 19 C -0.180 4.180 20 C 0.057 3.943 21 N -0.338 5.338 22 C -0.361 4.361 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.250 0.750 36 H 0.159 0.841 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.059 0.941 52 H 0.009 0.991 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.666 12.290 -2.036 25.864 hybrid contribution 1.651 -0.931 0.561 1.977 sum -21.015 11.359 -1.475 23.934 Atomic orbital electron populations 1.21635 0.93712 1.01909 1.01735 1.21903 0.96597 0.97759 1.00375 1.21265 0.84331 0.94471 0.94714 0.92871 1.21594 0.84410 0.92040 0.96987 0.90939 1.45889 1.25378 1.51349 1.12492 1.21139 0.84548 0.79926 0.83508 1.90676 1.74909 1.54696 1.26452 1.22855 0.94133 0.95321 1.02435 1.22818 0.99649 0.95815 0.96297 1.21469 0.95473 0.94488 0.96102 1.22923 0.97551 0.92326 1.01919 1.22096 1.02654 0.95150 0.97707 1.22648 0.86992 0.96601 0.95301 1.87865 1.40478 1.61502 1.42605 1.22772 1.03070 0.88493 0.87699 1.21981 0.96414 0.97914 1.00109 1.23210 0.95781 0.98756 1.00246 1.21116 0.93857 0.92275 0.87098 1.44684 1.00654 1.68340 1.20081 1.19307 0.90301 1.34737 0.91719 0.89927 1.25722 0.98617 1.02030 0.99326 1.70141 1.10294 1.54486 1.24951 0.85135 0.77655 0.77775 0.79117 1.21590 1.22349 1.18970 0.93409 0.92356 0.91243 0.94962 0.93235 0.74988 0.84060 0.90122 0.90981 0.90876 0.88626 0.91206 0.91036 0.92694 0.88338 0.87648 0.92337 0.90801 0.88726 0.91920 0.90677 0.94150 0.99122 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.57 71.98 0.69 -2.83 16 2 C -0.13 -4.60 5.42 30.59 0.17 -4.44 16 3 C 0.16 6.07 2.93 45.34 0.13 6.21 16 4 H 0.05 1.87 7.72 -2.39 -0.02 1.85 16 5 C 0.16 5.43 2.02 46.18 0.09 5.52 16 6 H 0.07 2.88 7.19 -2.39 -0.02 2.87 16 7 N -0.70 -17.77 4.90 -436.92 -2.14 -19.91 16 8 C 0.52 13.48 7.36 87.66 0.65 14.13 16 9 O -0.59 -20.90 15.54 -3.02 -0.05 -20.94 16 10 C -0.13 -2.06 3.80 -10.96 -0.04 -2.10 16 11 C -0.11 -1.86 6.56 30.99 0.20 -1.65 16 12 C -0.08 -1.01 0.77 -52.08 -0.04 -1.05 16 13 C -0.11 -1.55 6.58 30.99 0.20 -1.34 16 14 C -0.14 -1.98 5.33 30.63 0.16 -1.82 16 15 C 0.06 0.84 6.78 72.07 0.49 1.33 16 16 O -0.41 -6.62 10.72 -148.98 -1.60 -8.21 16 17 C 0.06 0.62 6.78 72.07 0.49 1.11 16 18 C -0.13 -1.29 5.23 30.63 0.16 -1.13 16 19 C -0.14 -5.45 6.77 31.99 0.22 -5.24 16 20 C 0.18 9.13 5.41 86.86 0.47 9.60 16 21 N -0.61 -30.43 3.13 -668.23 -2.09 -32.52 16 22 C -0.23 -12.53 9.76 84.03 0.82 -11.71 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.06 -3.57 5.47 84.86 0.46 -3.11 16 25 N -0.95 -57.17 10.57 21.65 0.23 -56.94 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 29 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 30 H 0.05 1.29 7.40 -2.39 -0.02 1.27 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 35 H 0.41 7.99 8.37 -92.71 -0.78 7.21 16 36 H 0.14 1.48 7.65 -2.39 -0.02 1.46 16 37 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 38 H 0.07 1.64 7.39 -2.39 -0.02 1.62 16 39 H 0.07 1.30 7.98 -2.38 -0.02 1.28 16 40 H 0.10 0.99 7.63 -2.39 -0.02 0.97 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.07 1.09 8.04 -2.38 -0.02 1.07 16 43 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.56 7.67 -2.39 -0.02 0.55 16 47 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.09 0.65 7.35 -2.39 -0.02 0.63 16 49 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 51 H 0.04 2.26 6.93 -2.39 -0.02 2.24 16 52 H -0.01 -0.52 8.06 -2.38 -0.02 -0.54 16 53 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -70.92 405.12 1.80 -69.11 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.10 Total: 20.78 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.32 Total: 1.46 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -4.00 Total: -109.38 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.64 Total: -29.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.92 1.80 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087795713.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.318 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds