Wall clock time and date at job start Tue Mar 31 2020 19:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47522 * 2 1 4 4 H 1.08999 * 115.55867 * 29.30569 * 3 2 1 5 5 C 1.53004 * 117.50060 * 243.62534 * 3 2 1 6 6 C 1.52991 * 117.50131 * 174.99954 * 3 2 1 7 7 H 1.09003 * 117.52099 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.49984 * 214.97820 * 6 3 2 9 9 O 1.21284 * 119.99928 * 359.97438 * 8 6 3 10 10 N 1.34776 * 119.99898 * 179.97438 * 8 6 3 11 11 C 1.46506 * 119.99861 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.49601 * 324.92962 * 11 10 8 13 13 C 1.53206 * 109.49732 * 84.99663 * 11 10 8 14 14 N 1.46928 * 108.76304 * 174.67807 * 13 11 10 15 15 C 1.36931 * 120.63067 * 126.29937 * 14 13 11 16 16 H 1.07998 * 120.00546 * 331.88730 * 15 14 13 17 17 C 1.38819 * 119.99833 * 151.88430 * 15 14 13 18 18 N 1.31625 * 119.99819 * 343.10047 * 17 15 14 19 19 Si 1.86797 * 119.99919 * 163.09199 * 17 15 14 20 20 H 1.48498 * 109.46870 * 60.00357 * 19 17 15 21 21 H 1.48502 * 109.47181 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47244 * 300.00310 * 19 17 15 23 23 C 1.46938 * 118.73089 * 306.32046 * 14 13 11 24 24 C 1.53086 * 108.82101 * 53.45720 * 23 14 13 25 25 C 1.53124 * 109.47662 * 185.51963 * 24 23 14 26 26 C 1.53103 * 109.14805 * 183.26592 * 25 24 23 27 27 O 1.42909 * 109.40771 * 57.51220 * 26 25 24 28 28 C 1.42898 * 114.11711 * 298.78498 * 27 26 25 29 29 C 1.53077 * 109.51584 * 65.81243 * 24 23 14 30 30 C 1.52940 * 109.50186 * 305.63237 * 24 23 14 31 31 H 1.09001 * 109.47093 * 59.99766 * 1 2 3 32 32 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47070 * 300.00090 * 1 2 3 34 34 H 1.09008 * 109.47085 * 239.99596 * 2 1 3 35 35 H 1.09001 * 109.47093 * 120.00234 * 2 1 3 36 36 H 1.08993 * 117.49653 * 145.01744 * 5 3 2 37 37 H 1.09005 * 117.51219 * 359.97438 * 5 3 2 38 38 H 0.96994 * 120.00260 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.58293 * 54.89774 * 13 11 10 40 40 H 1.09000 * 109.58909 * 294.46165 * 13 11 10 41 41 H 0.97001 * 119.99649 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.58041 * 293.65498 * 23 14 13 43 43 H 1.08998 * 109.68733 * 173.32667 * 23 14 13 44 44 H 1.09007 * 109.54127 * 63.36263 * 25 24 23 45 45 H 1.08994 * 109.52314 * 303.16345 * 25 24 23 46 46 H 1.08998 * 109.48819 * 297.52815 * 26 25 24 47 47 H 1.09003 * 109.48331 * 177.49352 * 26 25 24 48 48 H 1.08997 * 109.48248 * 181.16470 * 28 27 26 49 49 H 1.09000 * 109.48351 * 301.19084 * 28 27 26 50 50 H 1.09003 * 109.52162 * 56.78509 * 29 24 23 51 51 H 1.08998 * 109.52085 * 296.59799 * 29 24 23 52 52 H 1.09005 * 109.45082 * 181.14466 * 30 24 23 53 53 H 1.08997 * 109.45230 * 301.07760 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6578 0.1183 7 1 4.1807 0.7720 0.1957 8 6 4.0229 2.8619 0.8914 9 8 3.2158 3.6169 1.3910 10 7 5.3425 3.0998 1.0276 11 6 5.8020 4.2701 1.7796 12 1 5.1110 5.0981 1.6220 13 6 5.8593 3.9287 3.2721 14 7 6.4418 5.0673 3.9953 15 6 5.7848 5.6289 5.0574 16 1 4.7070 5.5864 5.1095 17 6 6.5044 6.2531 6.0672 18 7 7.7954 6.0281 6.1910 19 14 5.6406 7.4124 7.2501 20 1 4.5725 6.6764 7.9730 21 1 6.6236 7.9453 8.2273 22 1 5.0392 8.5375 6.4900 23 6 7.7424 5.5919 3.5569 24 6 7.6678 5.9101 2.0613 25 6 9.0526 6.3275 1.5585 26 6 8.9530 6.7222 0.0826 27 8 7.9983 7.7755 -0.0639 28 6 6.6747 7.4249 0.3448 29 6 6.6815 7.0580 1.8313 30 6 7.1986 4.6705 1.2983 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7213 2.9427 -1.5343 37 1 3.0100 1.1859 -2.0158 38 1 5.9879 2.4958 0.6283 39 1 6.4797 3.0450 3.4211 40 1 4.8520 3.7373 3.6421 41 1 8.2981 6.4640 6.8969 42 1 8.5160 4.8445 3.7332 43 1 7.9783 6.4996 4.1122 44 1 9.7463 5.4936 1.6665 45 1 9.4102 7.1775 2.1395 46 1 8.6358 5.8599 -0.5038 47 1 9.9269 7.0627 -0.2692 48 1 6.0078 8.2716 0.1825 49 1 6.3280 6.5720 -0.2387 50 1 6.9869 7.9239 2.4188 51 1 5.6820 6.7455 2.1339 52 1 7.1653 4.8919 0.2315 53 1 7.8933 3.8498 1.4769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089956749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:23 Heat of formation + Delta-G solvation = -71.495565 kcal Electronic energy + Delta-G solvation = -31200.088664 eV Core-core repulsion = 27264.482177 eV Total energy + Delta-G solvation = -3935.606487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68139 -40.75342 -38.65981 -37.82050 -35.92207 -35.11709 -33.24137 -32.83863 -32.02571 -30.78902 -28.70190 -27.32821 -25.77181 -24.62712 -24.57585 -24.47889 -23.10754 -21.84381 -21.41882 -21.07851 -19.43259 -18.68303 -18.10566 -17.61303 -16.90433 -16.74272 -16.49648 -16.27807 -15.91251 -15.72888 -15.42769 -15.35348 -15.18195 -15.11314 -15.02938 -14.72600 -14.24046 -13.93094 -13.49098 -13.38202 -13.21760 -13.09620 -13.02025 -12.96225 -12.77570 -12.70078 -12.38392 -12.19347 -12.17865 -12.13746 -11.93943 -11.91167 -11.85752 -11.63934 -11.22861 -11.16231 -11.01748 -10.96745 -10.68256 -10.61355 -10.27804 -10.10425 -8.68960 -7.92866 -5.37815 1.40516 1.42706 1.49406 1.53225 2.12897 2.47405 2.88589 3.01978 3.20869 3.55938 3.64598 3.73163 3.79163 3.87134 3.91559 3.97010 4.14298 4.17527 4.20653 4.27394 4.30731 4.32918 4.37968 4.49932 4.50449 4.55043 4.59459 4.74126 4.75546 4.80015 4.84758 4.88726 4.94899 4.95417 4.98838 5.01996 5.11112 5.15062 5.16565 5.25236 5.26049 5.29410 5.31173 5.42242 5.50418 5.53379 5.57258 5.62660 5.72935 6.31419 6.34261 6.63255 7.10663 7.33370 7.80043 8.30024 9.12125 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.003801 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.263907 B = 7365.641704 C = 9399.274021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.130 4.130 4 H 0.085 0.915 5 C -0.128 4.128 6 C -0.192 4.192 7 H 0.152 0.848 8 C 0.532 3.468 9 O -0.591 6.591 10 N -0.705 5.705 11 C 0.142 3.858 12 H 0.063 0.937 13 C 0.145 3.855 14 N -0.599 5.599 15 C -0.264 4.264 16 H 0.050 0.950 17 C -0.038 4.038 18 N -0.926 5.926 19 Si 0.958 3.042 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.281 1.281 23 C 0.194 3.806 24 C -0.071 4.071 25 C -0.136 4.136 26 C 0.063 3.937 27 O -0.399 6.399 28 C 0.069 3.931 29 C -0.129 4.129 30 C -0.097 4.097 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.416 0.584 39 H 0.019 0.981 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.001 0.999 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.111 0.889 48 H 0.094 0.906 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.056 0.944 52 H 0.086 0.914 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -10.482 -20.081 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.148 4.148 4 H 0.103 0.897 5 C -0.166 4.166 6 C -0.212 4.212 7 H 0.170 0.830 8 C 0.320 3.680 9 O -0.472 6.472 10 N -0.356 5.356 11 C 0.035 3.965 12 H 0.081 0.919 13 C 0.018 3.982 14 N -0.322 5.322 15 C -0.395 4.395 16 H 0.068 0.932 17 C -0.234 4.234 18 N -0.572 5.572 19 Si 0.786 3.214 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.207 1.207 23 C 0.068 3.932 24 C -0.074 4.074 25 C -0.175 4.175 26 C -0.014 4.014 27 O -0.318 6.318 28 C -0.007 4.007 29 C -0.167 4.167 30 C -0.135 4.135 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.253 0.747 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.129 0.871 48 H 0.112 0.888 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.074 0.926 52 H 0.104 0.896 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.988 -9.712 -19.652 22.123 hybrid contribution -0.211 0.417 1.784 1.844 sum -3.200 -9.295 -17.868 20.393 Atomic orbital electron populations 1.21751 0.95186 1.02243 1.01649 1.21149 0.96292 0.92102 1.03040 1.22478 0.90949 0.99461 1.01957 0.89667 1.23191 0.99952 1.03291 0.90129 1.22350 0.98234 0.98040 1.02623 0.83049 1.20423 0.82174 0.86078 0.79277 1.90706 1.55219 1.50582 1.50667 1.45852 1.07041 1.28233 1.54508 1.21274 0.96300 0.87762 0.91128 0.91930 1.21220 0.95655 0.89709 0.91664 1.44078 1.21263 1.33573 1.33263 1.19271 0.90156 1.31365 0.98667 0.93231 1.25626 0.96666 1.02707 0.98427 1.70141 1.07850 1.44902 1.34272 0.85494 0.77724 0.79491 0.78705 1.20479 1.21258 1.20736 1.20637 0.85156 0.97013 0.90357 1.21001 0.95258 0.94377 0.96739 1.22118 0.95963 1.01803 0.97572 1.22756 0.93286 0.90892 0.94420 1.87864 1.18822 1.39788 1.85367 1.22568 0.84211 1.00941 0.92979 1.22000 0.99822 0.97735 0.97095 1.21720 0.94275 0.97610 0.99910 0.92252 0.91306 0.93947 0.89409 0.91648 0.89570 0.84504 0.74738 0.96281 0.95530 0.93918 0.98065 0.92938 0.89558 0.92793 0.91309 0.87110 0.88796 0.92164 0.94055 0.92554 0.89601 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.87 71.98 0.71 -1.40 16 2 C -0.09 -1.25 6.21 30.59 0.19 -1.06 16 3 C -0.13 -2.54 5.25 -10.80 -0.06 -2.60 16 4 H 0.09 2.25 7.60 -2.39 -0.02 2.24 16 5 C -0.13 -1.99 9.88 30.60 0.30 -1.69 16 6 C -0.19 -3.74 5.91 -11.54 -0.07 -3.81 16 7 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 8 C 0.53 15.81 7.58 87.66 0.66 16.47 16 9 O -0.59 -24.14 15.92 -3.04 -0.05 -24.19 16 10 N -0.71 -18.72 5.08 -442.12 -2.25 -20.97 16 11 C 0.14 4.88 2.27 45.07 0.10 4.99 16 12 H 0.06 2.56 5.73 -2.39 -0.01 2.54 16 13 C 0.14 6.40 6.09 86.37 0.53 6.93 16 14 N -0.60 -30.72 2.51 -699.24 -1.76 -32.48 16 15 C -0.26 -15.31 9.58 84.04 0.81 -14.50 16 16 H 0.05 2.96 7.88 -2.91 -0.02 2.93 16 17 C -0.04 -2.18 4.92 84.86 0.42 -1.77 16 18 N -0.93 -55.06 11.19 21.65 0.24 -54.82 16 19 Si 0.96 46.76 29.59 68.60 2.03 48.79 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 23 C 0.19 9.11 3.97 86.32 0.34 9.45 16 24 C -0.07 -2.50 0.51 -52.11 -0.03 -2.53 16 25 C -0.14 -3.95 4.92 30.67 0.15 -3.80 16 26 C 0.06 1.47 6.57 72.02 0.47 1.94 16 27 O -0.40 -11.61 10.76 -148.98 -1.60 -13.22 16 28 C 0.07 2.04 6.57 72.02 0.47 2.51 16 29 C -0.13 -4.76 4.49 30.66 0.14 -4.62 16 30 C -0.10 -2.80 3.63 30.59 0.11 -2.69 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.85 7.88 -2.38 -0.02 0.83 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.14 1.21 8.03 -2.38 -0.02 1.19 16 38 H 0.42 7.60 8.60 -92.71 -0.80 6.81 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.03 1.31 7.93 -2.39 -0.02 1.29 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.00 0.06 8.14 -2.38 -0.02 0.05 16 43 H 0.05 2.87 6.07 -2.39 -0.01 2.85 16 44 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.07 1.34 6.59 -2.39 -0.02 1.32 16 47 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.06 1.59 6.64 -2.39 -0.02 1.57 16 50 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.06 2.39 5.94 -2.39 -0.01 2.37 16 52 H 0.09 2.01 5.03 -2.38 -0.01 2.00 16 53 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -74.04 400.84 1.97 -72.07 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.10 Total: 23.00 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.26 Total: 1.82 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.76 Total: -108.27 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.65 Total: -37.41 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.04 1.97 -72.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089956749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.578 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds