Wall clock time and date at job start Tue Mar 31 2020 19:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46960 * 2 1 4 4 H 1.09006 * 110.43786 * 52.45638 * 3 2 1 5 5 C 1.54808 * 110.49227 * 289.76800 * 3 2 1 6 6 C 1.54998 * 102.09729 * 220.44375 * 5 3 2 7 7 O 1.44380 * 103.48930 * 37.02181 * 6 5 3 8 8 C 1.43742 * 106.97457 * 319.94037 * 7 6 5 9 9 H 1.09002 * 110.00811 * 267.02226 * 8 7 6 10 10 C 1.50704 * 109.88173 * 145.93829 * 8 7 6 11 11 O 1.21284 * 119.99467 * 357.16740 * 10 8 7 12 12 N 1.34779 * 120.00336 * 177.17213 * 10 8 7 13 13 C 1.46500 * 119.99686 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46764 * 179.97438 * 13 12 10 15 15 C 1.53558 * 111.61796 * 299.87383 * 14 13 12 16 16 C 1.53653 * 107.09752 * 241.75296 * 15 14 13 17 17 C 1.53896 * 105.92998 * 340.08770 * 16 15 14 18 18 C 1.53749 * 105.45583 * 28.24547 * 17 16 15 19 19 H 1.08995 * 110.99225 * 96.13308 * 18 17 16 20 20 N 1.46975 * 109.57965 * 219.06559 * 18 17 16 21 21 C 1.36935 * 126.36004 * 267.64465 * 20 18 17 22 22 H 1.08002 * 120.00324 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99684 * 179.97438 * 21 20 18 24 24 N 1.31616 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99950 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46936 * 60.00394 * 25 23 21 27 27 H 1.48500 * 109.47050 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47222 * 300.00523 * 25 23 21 29 29 C 1.47108 * 107.27269 * 87.62221 * 20 18 17 30 30 C 1.53822 * 106.31877 * 29.69080 * 29 20 18 31 31 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47197 * 299.99784 * 1 2 3 33 33 H 1.09005 * 109.47209 * 60.00037 * 1 2 3 34 34 H 1.09001 * 109.47197 * 240.00216 * 2 1 3 35 35 H 1.08999 * 109.47447 * 120.00303 * 2 1 3 36 36 H 1.09000 * 110.90517 * 338.64183 * 5 3 2 37 37 H 1.09004 * 110.90735 * 102.20849 * 5 3 2 38 38 H 1.08992 * 110.61753 * 155.52151 * 6 5 3 39 39 H 1.09005 * 110.61602 * 278.36563 * 6 5 3 40 40 H 0.96995 * 119.99720 * 359.97438 * 12 10 8 41 41 H 1.08995 * 109.47675 * 59.99595 * 13 12 10 42 42 H 1.09005 * 109.46986 * 299.99050 * 13 12 10 43 43 H 1.08999 * 109.88770 * 122.41286 * 15 14 13 44 44 H 1.08997 * 109.97239 * 1.14250 * 15 14 13 45 45 H 1.09002 * 110.17342 * 220.94901 * 16 15 14 46 46 H 1.09002 * 110.16922 * 99.22543 * 16 15 14 47 47 H 1.08996 * 110.25072 * 147.24294 * 17 16 15 48 48 H 1.09002 * 110.25169 * 269.25160 * 17 16 15 49 49 H 0.97001 * 119.99842 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.08741 * 148.90446 * 29 20 18 51 51 H 1.09000 * 110.08842 * 270.47866 * 29 20 18 52 52 H 1.09000 * 110.23954 * 98.72582 * 30 29 20 53 53 H 1.08998 * 110.24137 * 220.63675 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8099 5 6 1.7582 2.1169 -1.3647 6 6 3.0602 2.9232 -1.6035 7 8 4.0920 2.0594 -1.0801 8 6 3.5756 1.4718 0.1258 9 1 3.8655 2.0731 0.9875 10 6 4.1040 0.0688 0.2792 11 8 4.8095 -0.4111 -0.5827 12 7 3.7924 -0.6527 1.3742 13 6 4.3065 -2.0164 1.5235 14 6 3.8086 -2.6073 2.8441 15 6 4.2812 -1.7797 4.0481 16 6 5.1610 -2.6981 4.9102 17 6 4.7933 -4.1367 4.5058 18 6 4.3261 -4.0446 3.0439 19 1 5.1393 -4.2831 2.3584 20 7 3.1812 -4.9422 2.8351 21 6 3.2358 -6.2411 2.4048 22 1 4.1895 -6.6969 2.1833 23 6 2.0653 -6.9718 2.2533 24 7 0.9030 -6.4161 2.5229 25 14 2.1396 -8.7434 1.6657 26 1 2.9439 -9.5481 2.6200 27 1 0.7639 -9.2970 1.5872 28 1 2.7702 -8.7931 0.3220 29 6 1.9659 -4.1863 3.1749 30 6 2.2734 -2.7114 2.8647 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6145 1.3699 -2.1454 37 1 0.8956 2.7802 -1.3000 38 1 3.2119 3.1007 -2.6681 39 1 3.0330 3.8666 -1.0582 40 1 3.2283 -0.2688 2.0636 41 1 5.3963 -1.9960 1.5229 42 1 3.9541 -2.6304 0.6946 43 1 3.4212 -1.4407 4.6255 44 1 4.8623 -0.9233 3.7061 45 1 4.9480 -2.5387 5.9673 46 1 6.2149 -2.5082 4.7069 47 1 5.6660 -4.7850 4.5828 48 1 3.9871 -4.5116 5.1364 49 1 0.0851 -6.9266 2.4167 50 1 1.1290 -4.5300 2.5671 51 1 1.7343 -4.3057 4.2333 52 1 1.8637 -2.4372 1.8925 53 1 1.8609 -2.0685 3.6423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094437494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:46 Heat of formation + Delta-G solvation = -80.468516 kcal Electronic energy + Delta-G solvation = -31670.947900 eV Core-core repulsion = 27734.952316 eV Total energy + Delta-G solvation = -3935.995584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90189 -40.89062 -39.26725 -36.51466 -35.89244 -35.04427 -33.39516 -32.19043 -31.29172 -30.61248 -29.14231 -28.52163 -25.91186 -25.53297 -24.63437 -23.54037 -22.34499 -22.07861 -21.32130 -20.77406 -19.71668 -18.96160 -18.09452 -17.70838 -17.22845 -16.95092 -16.45840 -16.25292 -15.76654 -15.66281 -15.48034 -15.35026 -15.14273 -14.99713 -14.44959 -14.33896 -14.19518 -14.09661 -13.66045 -13.48340 -13.34259 -13.05285 -12.84081 -12.75568 -12.56390 -12.53120 -12.20522 -12.16292 -12.07671 -12.06461 -11.86909 -11.67780 -11.63166 -11.54262 -11.50851 -11.46230 -11.29557 -11.07586 -10.98556 -10.67044 -10.46005 -9.95764 -8.85934 -7.72910 -5.18772 1.44574 1.46945 1.52918 1.57864 1.93666 2.49292 3.04933 3.30989 3.39429 3.52813 3.64497 3.69887 3.72112 3.77274 3.98085 4.03466 4.21969 4.29617 4.31995 4.37583 4.42094 4.47269 4.49926 4.53960 4.58275 4.65672 4.68153 4.75984 4.77888 4.84517 4.88316 4.90461 4.98402 5.00554 5.09844 5.12721 5.16298 5.19276 5.24781 5.26667 5.29044 5.38766 5.42679 5.44496 5.50278 5.52896 5.61232 5.72389 5.82955 5.90354 6.41168 6.55201 7.14930 7.23632 7.83490 8.48570 9.24830 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003496 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.951708 B = 8007.872465 C = 8974.667794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C -0.104 4.104 4 H 0.134 0.866 5 C -0.146 4.146 6 C 0.038 3.962 7 O -0.387 6.387 8 C 0.063 3.937 9 H 0.128 0.872 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.702 5.702 13 C 0.156 3.844 14 C -0.068 4.068 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.132 4.132 18 C 0.157 3.843 19 H 0.042 0.958 20 N -0.609 5.609 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.064 4.064 24 N -0.944 5.944 25 Si 0.973 3.027 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.143 3.857 30 C -0.116 4.116 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.041 0.959 49 H 0.246 0.754 50 H 0.081 0.919 51 H -0.017 1.017 52 H 0.054 0.946 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 23.273 0.998 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.122 4.122 4 H 0.151 0.849 5 C -0.183 4.183 6 C -0.037 4.037 7 O -0.306 6.306 8 C 0.002 3.998 9 H 0.146 0.854 10 C 0.299 3.701 11 O -0.460 6.460 12 N -0.357 5.357 13 C 0.031 3.969 14 C -0.069 4.069 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.172 4.172 18 C 0.049 3.951 19 H 0.060 0.940 20 N -0.331 5.331 21 C -0.362 4.362 22 H 0.092 0.908 23 C -0.256 4.256 24 N -0.594 5.594 25 Si 0.801 3.199 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.017 3.983 30 C -0.154 4.154 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.099 0.901 51 H 0.001 0.999 52 H 0.073 0.927 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.952 22.687 0.231 22.709 hybrid contribution -0.384 -1.823 -0.237 1.878 sum 0.567 20.864 -0.006 20.872 Atomic orbital electron populations 1.21712 0.94004 1.01446 1.02998 1.22068 0.97790 0.95703 1.02086 1.22647 0.91326 0.97427 1.00814 0.84857 1.23248 0.99418 0.99745 0.95926 1.23876 0.85493 0.93640 1.00711 1.88976 1.39717 1.62041 1.39854 1.22944 0.95077 0.90531 0.91252 0.85426 1.21063 0.79444 0.88447 0.81139 1.90700 1.39513 1.73048 1.42768 1.45973 1.52551 1.14778 1.22435 1.21020 0.97887 0.81856 0.96098 1.21721 0.95995 0.94982 0.94234 1.22145 1.00340 0.97496 0.94041 1.21961 0.99921 0.92979 0.99983 1.22552 0.99438 0.97803 0.97396 1.21474 0.89831 0.89032 0.94771 0.94032 1.44685 1.02388 1.09274 1.76727 1.19363 0.93117 0.87730 1.35969 0.90793 1.25487 0.95113 1.02126 1.02874 1.69914 0.97061 1.36139 1.56264 0.85236 0.76254 0.80183 0.78185 1.20596 1.21803 1.20863 1.21580 0.91742 0.88863 0.96070 1.22657 0.93886 0.97624 1.01280 0.94315 0.90388 0.92012 0.95362 0.90086 0.92219 0.86734 0.88468 0.89021 0.74401 0.92038 0.94901 0.89763 0.89751 0.90637 0.90988 0.93090 0.93986 0.94450 0.90137 0.99910 0.92724 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.79 71.98 0.70 -1.87 16 2 C -0.14 -2.89 4.15 30.59 0.13 -2.76 16 3 C -0.10 -1.52 3.04 -9.80 -0.03 -1.55 16 4 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 5 C -0.15 -1.99 6.03 31.89 0.19 -1.80 16 6 C 0.04 0.57 7.72 72.67 0.56 1.14 16 7 O -0.39 -9.70 10.74 -130.26 -1.40 -11.10 16 8 C 0.06 1.25 3.84 30.22 0.12 1.37 16 9 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 10 C 0.51 14.60 5.69 87.66 0.50 15.10 16 11 O -0.58 -23.43 16.53 15.68 0.26 -23.18 16 12 N -0.70 -16.99 3.06 -463.04 -1.42 -18.41 16 13 C 0.16 4.89 4.27 86.38 0.37 5.26 16 14 C -0.07 -2.09 0.72 -51.33 -0.04 -2.13 16 15 C -0.10 -2.32 5.60 31.00 0.17 -2.14 16 16 C -0.11 -2.73 6.79 31.12 0.21 -2.52 16 17 C -0.13 -4.62 6.43 31.15 0.20 -4.42 16 18 C 0.16 6.28 3.40 45.51 0.15 6.44 16 19 H 0.04 1.76 7.89 -2.39 -0.02 1.74 16 20 N -0.61 -30.81 2.94 -670.42 -1.97 -32.78 16 21 C -0.23 -13.16 10.32 84.04 0.87 -12.29 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 23 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 24 N -0.94 -56.00 10.06 21.65 0.22 -55.78 16 25 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 29 C 0.14 6.81 5.92 86.54 0.51 7.32 16 30 C -0.12 -3.92 5.76 31.17 0.18 -3.74 16 31 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.96 7.63 -2.38 -0.02 0.94 16 34 H 0.03 0.80 7.70 -2.39 -0.02 0.78 16 35 H 0.08 1.76 3.93 -2.39 -0.01 1.75 16 36 H 0.06 1.08 7.77 -2.39 -0.02 1.06 16 37 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.42 7.19 6.89 -92.71 -0.64 6.55 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.08 1.64 7.02 -2.39 -0.02 1.62 16 44 H 0.08 1.54 7.48 -2.39 -0.02 1.52 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.04 1.69 7.89 -2.39 -0.02 1.67 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.08 4.49 5.51 -2.39 -0.01 4.47 16 51 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 52 H 0.05 1.88 6.81 -2.39 -0.02 1.86 16 53 H 0.09 2.42 7.05 -2.39 -0.02 2.40 16 Total: -1.00 -77.10 394.70 3.24 -73.86 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.25 Total: 20.56 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.27 Total: -1.76 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.17 Total: -106.97 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.14 Total: -34.27 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.10 3.24 -73.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094437494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.610 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds