Wall clock time and date at job start Tue Mar 31 2020 19:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 H 1.09005 * 115.56101 * 29.30975 * 3 2 1 5 5 C 1.53080 * 117.49630 * 243.60565 * 3 2 1 6 6 C 1.53000 * 117.50201 * 174.99921 * 3 2 1 7 7 H 1.09002 * 117.49587 * 359.97438 * 6 3 2 8 8 C 1.50697 * 117.50162 * 214.97783 * 6 3 2 9 9 O 1.21279 * 119.99676 * 0.08722 * 8 6 3 10 10 N 1.34770 * 120.00169 * 180.08794 * 8 6 3 11 11 C 1.47157 * 120.99048 * 0.02562 * 10 8 6 12 12 C 1.53296 * 108.40762 * 129.41161 * 11 10 8 13 13 H 1.08997 * 109.51218 * 292.42919 * 12 11 10 14 14 C 1.53010 * 109.50800 * 172.28536 * 12 11 10 15 15 O 1.43045 * 109.18792 * 52.32924 * 12 11 10 16 16 C 1.42894 * 114.21973 * 297.52637 * 15 12 11 17 17 C 1.52990 * 109.55719 * 182.25131 * 16 15 12 18 18 C 1.53184 * 109.35418 * 59.06369 * 17 16 15 19 19 N 1.46932 * 108.77140 * 54.57959 * 18 17 16 20 20 C 1.36942 * 120.64067 * 126.34015 * 19 18 17 21 21 H 1.07994 * 120.00195 * 332.60518 * 20 19 18 22 22 C 1.38818 * 119.99509 * 152.60998 * 20 19 18 23 23 N 1.31617 * 119.99343 * 159.35985 * 22 20 19 24 24 Si 1.86795 * 120.00350 * 339.36306 * 22 20 19 25 25 H 1.48499 * 109.47286 * 92.93882 * 24 22 20 26 26 H 1.48499 * 109.47099 * 212.94640 * 24 22 20 27 27 H 1.48508 * 109.46876 * 332.94222 * 24 22 20 28 28 C 1.46925 * 118.71421 * 306.32643 * 19 18 17 29 29 C 1.52989 * 109.56575 * 302.56470 * 16 15 12 30 30 C 1.47162 * 120.99217 * 180.02562 * 10 8 6 31 31 H 1.08999 * 109.47596 * 300.00094 * 1 2 3 32 32 H 1.09005 * 109.47530 * 60.00127 * 1 2 3 33 33 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47175 * 240.00214 * 2 1 3 35 35 H 1.08996 * 109.47321 * 119.99954 * 2 1 3 36 36 H 1.08990 * 117.51601 * 145.03494 * 5 3 2 37 37 H 1.08997 * 117.48937 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.68517 * 249.15261 * 11 10 8 39 39 H 1.09002 * 109.68232 * 9.66719 * 11 10 8 40 40 H 1.08999 * 109.47040 * 59.99985 * 14 12 11 41 41 H 1.08996 * 109.46748 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.46876 * 299.99989 * 14 12 11 43 43 H 1.09001 * 109.49660 * 179.02854 * 17 16 15 44 44 H 1.09004 * 109.48954 * 299.09918 * 17 16 15 45 45 H 1.09001 * 109.58620 * 294.79722 * 18 17 16 46 46 H 1.08998 * 109.70879 * 174.43787 * 18 17 16 47 47 H 0.97004 * 119.99498 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.58426 * 293.87511 * 28 19 18 49 49 H 1.09002 * 109.58569 * 173.45463 * 28 19 18 50 50 H 1.08997 * 109.49059 * 60.88876 * 29 16 15 51 51 H 1.09000 * 109.49260 * 180.96710 * 29 16 15 52 52 H 1.08998 * 109.67096 * 350.19438 * 30 10 8 53 53 H 1.08994 * 109.67784 * 110.70496 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3882 2.1718 0.4814 5 6 2.8446 1.9077 -1.2163 6 6 3.5500 1.6580 0.1183 7 1 4.1802 0.7721 0.1966 8 6 4.0227 2.8622 0.8914 9 8 3.2156 3.6159 1.3927 10 7 5.3422 3.1014 1.0256 11 6 6.3402 2.2016 0.4259 12 6 7.3320 3.0476 -0.3807 13 1 6.8247 3.4799 -1.2431 14 6 8.4880 2.1651 -0.8561 15 8 7.8399 4.0958 0.4497 16 6 6.8460 5.0152 0.9068 17 6 7.5100 6.1174 1.7345 18 6 8.5479 6.8436 0.8732 19 7 7.8944 7.3200 -0.3535 20 6 7.9751 8.6367 -0.7212 21 1 8.1073 9.4002 0.0311 22 6 7.8870 8.9899 -2.0608 23 7 7.5582 10.2192 -2.3969 24 14 8.2351 7.7205 -3.3862 25 1 6.9641 7.0704 -3.7950 26 1 8.8501 8.3880 -4.5616 27 1 9.1679 6.6939 -2.8557 28 6 7.1529 6.3563 -1.1783 29 6 6.1301 5.6351 -0.2947 30 6 5.8278 4.2703 1.7763 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.7224 2.9427 -1.5351 37 1 3.0107 1.1856 -2.0158 38 1 6.8704 1.6649 1.2126 39 1 5.8436 1.4898 -0.2335 40 1 8.0990 1.3642 -1.4847 41 1 9.1930 2.7674 -1.4290 42 1 8.9958 1.7353 0.0074 43 1 6.7533 6.8275 2.0682 44 1 8.0016 5.6752 2.6011 45 1 9.3535 6.1564 0.6148 46 1 8.9539 7.6920 1.4241 47 1 7.4970 10.4661 -3.3329 48 1 7.8456 5.6298 -1.6030 49 1 6.6358 6.8833 -1.9801 50 1 5.6409 4.8501 -0.8713 51 1 5.3842 6.3488 0.0549 52 1 4.9919 4.9300 2.0092 53 1 6.3042 3.9414 2.6997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098639035.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:55 Heat of formation + Delta-G solvation = -50.679948 kcal Electronic energy + Delta-G solvation = -31663.449924 eV Core-core repulsion = 27728.746070 eV Total energy + Delta-G solvation = -3934.703855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02856 -40.52466 -38.33233 -37.91255 -35.81951 -35.17098 -33.56278 -32.90666 -32.10188 -31.54308 -29.13772 -27.37564 -26.35693 -24.84159 -24.66270 -24.34751 -23.20886 -22.13280 -21.41427 -20.69959 -19.90475 -18.99117 -18.43202 -17.53021 -17.35847 -16.96046 -16.53595 -16.10840 -15.91085 -15.78747 -15.68128 -15.35269 -15.23217 -15.12328 -14.73586 -14.43939 -14.27836 -13.78188 -13.69590 -13.60886 -13.45405 -13.26674 -13.16189 -13.03922 -12.96612 -12.93164 -12.66277 -12.47296 -12.28799 -12.19744 -12.19161 -11.94086 -11.86990 -11.67780 -11.46736 -11.44987 -11.24826 -10.95865 -10.91397 -10.77562 -10.70716 -9.57618 -8.95177 -8.19964 -5.50899 1.23676 1.35305 1.37164 1.45693 1.76317 2.37977 2.62233 2.80240 3.01440 3.27682 3.34884 3.58416 3.66542 3.70141 3.78206 3.79278 3.85673 4.05303 4.10850 4.16968 4.22960 4.26924 4.34850 4.39822 4.46433 4.48179 4.55953 4.59626 4.60828 4.63526 4.71530 4.75702 4.76532 4.83997 4.91290 4.93431 4.94074 4.97899 5.04359 5.06606 5.11642 5.14563 5.21112 5.27150 5.30652 5.34801 5.43173 5.48879 5.83706 6.09975 6.26787 6.28965 6.88429 7.04258 7.59245 8.01511 9.00085 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003447 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.289228 B = 8121.750371 C = 8533.489582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.120 4.120 4 H 0.088 0.912 5 C -0.141 4.141 6 C -0.191 4.191 7 H 0.158 0.842 8 C 0.536 3.464 9 O -0.587 6.587 10 N -0.609 5.609 11 C 0.084 3.916 12 C 0.058 3.942 13 H 0.049 0.951 14 C -0.136 4.136 15 O -0.370 6.370 16 C 0.127 3.873 17 C -0.112 4.112 18 C 0.151 3.849 19 N -0.618 5.618 20 C -0.246 4.246 21 H 0.055 0.945 22 C -0.037 4.037 23 N -0.957 5.957 24 Si 0.945 3.055 25 H -0.280 1.280 26 H -0.308 1.308 27 H -0.261 1.261 28 C 0.138 3.862 29 C -0.143 4.143 30 C 0.096 3.904 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.059 0.941 47 H 0.261 0.739 48 H 0.032 0.968 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.051 0.949 52 H 0.078 0.922 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 -28.925 5.036 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.139 4.139 4 H 0.106 0.894 5 C -0.179 4.179 6 C -0.211 4.211 7 H 0.175 0.825 8 C 0.327 3.673 9 O -0.468 6.468 10 N -0.341 5.341 11 C -0.038 4.038 12 C -0.001 4.001 13 H 0.067 0.933 14 C -0.193 4.193 15 O -0.289 6.289 16 C 0.087 3.913 17 C -0.151 4.151 18 C 0.027 3.973 19 N -0.343 5.343 20 C -0.376 4.376 21 H 0.073 0.927 22 C -0.231 4.231 23 N -0.603 5.603 24 Si 0.774 3.226 25 H -0.208 1.208 26 H -0.236 1.236 27 H -0.185 1.185 28 C 0.013 3.987 29 C -0.182 4.182 30 C -0.027 4.027 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.096 0.904 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.263 -28.414 5.258 29.567 hybrid contribution -0.165 0.840 -0.855 1.210 sum -6.428 -27.574 4.403 28.654 Atomic orbital electron populations 1.21758 0.95243 1.02303 1.01621 1.21149 0.96211 0.91783 1.03285 1.22506 0.90667 0.99679 1.01031 0.89410 1.23211 1.01067 1.02979 0.90611 1.22382 0.98338 0.98185 1.02227 0.82488 1.20398 0.81352 0.86220 0.79363 1.90674 1.54501 1.50674 1.50919 1.48151 1.05751 1.26657 1.53495 1.22728 0.89826 0.92365 0.98900 1.22727 0.96378 0.88382 0.92582 0.93348 1.21718 0.96533 0.98737 1.02302 1.88005 1.33706 1.39190 1.68021 1.21485 0.88133 0.88960 0.92743 1.21894 0.99509 0.95607 0.98084 1.20966 0.93535 0.96655 0.86173 1.44479 1.58822 1.05020 1.25982 1.18908 1.43978 0.83045 0.91657 0.92720 1.25900 1.00462 0.97458 0.99308 1.69968 1.52097 1.20739 1.17523 0.85916 0.78325 0.79442 0.78870 1.20752 1.23627 1.18508 1.21121 0.92848 0.91381 0.93360 1.22369 0.98289 0.99212 0.98328 1.22204 0.97582 0.87965 0.94912 0.93570 0.92757 0.91212 0.89668 0.90848 0.90521 0.84547 0.88492 0.85849 0.88015 0.93142 0.90520 0.91199 0.88360 0.94462 0.92282 0.92976 0.94967 0.94077 0.91670 0.92974 0.90390 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.87 71.98 0.71 -1.01 16 2 C -0.09 -0.95 6.22 30.59 0.19 -0.76 16 3 C -0.12 -2.04 5.25 -10.77 -0.06 -2.10 16 4 H 0.09 2.04 7.60 -2.38 -0.02 2.03 16 5 C -0.14 -2.23 9.88 30.62 0.30 -1.92 16 6 C -0.19 -3.22 4.67 -11.54 -0.05 -3.28 16 7 H 0.16 1.54 6.91 -2.39 -0.02 1.52 16 8 C 0.54 13.99 7.49 87.66 0.66 14.65 16 9 O -0.59 -20.79 15.73 -3.03 -0.05 -20.84 16 10 N -0.61 -14.32 2.52 -817.48 -2.06 -16.38 16 11 C 0.08 1.35 5.76 86.35 0.50 1.84 16 12 C 0.06 1.24 3.02 30.70 0.09 1.34 16 13 H 0.05 1.23 6.29 -2.39 -0.02 1.22 16 14 C -0.14 -2.14 9.57 71.99 0.69 -1.45 16 15 O -0.37 -10.61 8.65 -148.98 -1.29 -11.90 16 16 C 0.13 3.92 0.68 -10.73 -0.01 3.91 16 17 C -0.11 -3.57 5.10 30.65 0.16 -3.42 16 18 C 0.15 6.01 6.28 86.36 0.54 6.56 16 19 N -0.62 -30.28 2.77 -699.09 -1.94 -32.22 16 20 C -0.25 -14.44 10.04 84.03 0.84 -13.59 16 21 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 22 C -0.04 -2.22 5.23 84.86 0.44 -1.77 16 23 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16 24 Si 0.95 48.25 24.35 68.60 1.67 49.92 16 25 H -0.28 -13.68 6.62 99.48 0.66 -13.02 16 26 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 27 H -0.26 -12.78 6.64 99.48 0.66 -12.12 16 28 C 0.14 6.20 3.97 86.36 0.34 6.54 16 29 C -0.14 -5.33 4.33 30.65 0.13 -5.20 16 30 C 0.10 2.62 5.29 86.33 0.46 3.07 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.63 7.88 -2.39 -0.02 0.61 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.14 1.29 8.03 -2.39 -0.02 1.27 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.12 1.22 5.83 -2.39 -0.01 1.21 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.04 1.46 7.83 -2.39 -0.02 1.44 16 46 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 47 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 48 H 0.03 1.43 6.76 -2.39 -0.02 1.41 16 49 H 0.04 2.07 4.49 -2.39 -0.01 2.06 16 50 H 0.06 2.26 6.15 -2.39 -0.01 2.24 16 51 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.08 2.48 7.07 -2.39 -0.02 2.47 16 53 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -77.25 395.98 3.36 -73.89 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.78 Total: 15.66 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.94 Total: 3.41 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.69 Total: -110.14 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.34 Total: -32.74 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -77.25 3.36 -73.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098639035.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.211 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds