Wall clock time and date at job start Tue Mar 31 2020 19:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.08998 * 109.48245 * 54.97563 * 3 2 1 5 5 O 1.42912 * 109.48915 * 294.94850 * 3 2 1 6 6 C 1.42899 * 114.09612 * 178.85257 * 5 3 2 7 7 C 1.53088 * 109.41576 * 61.15993 * 6 5 3 8 8 C 1.53313 * 109.19704 * 302.38812 * 7 6 5 9 9 C 1.53089 * 109.48261 * 175.00117 * 3 2 1 10 10 H 1.08996 * 109.51848 * 297.57025 * 9 3 2 11 11 C 1.50697 * 109.52390 * 57.69555 * 9 3 2 12 12 O 1.21287 * 119.99829 * 359.59679 * 11 9 3 13 13 N 1.34777 * 120.00507 * 179.87859 * 11 9 3 14 14 C 1.46498 * 120.00448 * 179.72461 * 13 11 9 15 15 C 1.52998 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47128 * 179.97438 * 15 14 13 17 17 C 1.29458 * 117.69493 * 95.00147 * 16 15 14 18 18 C 1.50321 * 123.65320 * 180.85563 * 17 16 15 19 19 N 1.47009 * 109.16313 * 349.02447 * 18 17 16 20 20 C 1.36940 * 121.37106 * 222.92408 * 19 18 17 21 21 H 1.07998 * 119.99864 * 155.36603 * 20 19 18 22 22 C 1.38815 * 120.00088 * 335.35906 * 20 19 18 23 23 N 1.31617 * 119.99746 * 159.82258 * 22 20 19 24 24 Si 1.86801 * 119.99940 * 339.82418 * 22 20 19 25 25 H 1.48501 * 109.46922 * 88.38706 * 24 22 20 26 26 H 1.48493 * 109.47031 * 208.38350 * 24 22 20 27 27 H 1.48498 * 109.47219 * 328.39127 * 24 22 20 28 28 C 1.47334 * 117.25139 * 42.94645 * 19 18 17 29 29 C 1.49967 * 117.69602 * 274.73985 * 16 15 14 30 30 H 1.09001 * 109.47579 * 300.00179 * 1 2 3 31 31 H 1.09004 * 109.47156 * 60.00378 * 1 2 3 32 32 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47078 * 240.00360 * 2 1 3 34 34 H 1.08998 * 109.47475 * 119.99898 * 2 1 3 35 35 H 1.09007 * 109.48077 * 181.13887 * 6 5 3 36 36 H 1.08996 * 109.48379 * 301.17212 * 6 5 3 37 37 H 1.09002 * 109.52608 * 62.29222 * 7 6 5 38 38 H 1.09006 * 109.52655 * 182.48564 * 7 6 5 39 39 H 1.08997 * 109.52784 * 297.13093 * 8 7 6 40 40 H 1.09000 * 109.63120 * 176.81262 * 8 7 6 41 41 H 0.97003 * 119.99447 * 359.72033 * 13 11 9 42 42 H 1.08999 * 109.47255 * 299.99780 * 14 13 11 43 43 H 1.08998 * 109.46732 * 59.99922 * 14 13 11 44 44 H 1.08999 * 109.46966 * 300.00157 * 15 14 13 45 45 H 1.09000 * 109.46888 * 59.99644 * 15 14 13 46 46 H 1.07998 * 118.16970 * 0.88141 * 17 16 15 47 47 H 1.09007 * 109.51910 * 108.92840 * 18 17 16 48 48 H 1.08992 * 109.52591 * 229.05152 * 18 17 16 49 49 H 0.97003 * 119.99856 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.78285 * 57.80918 * 28 19 18 51 51 H 1.09004 * 109.78003 * 178.56453 * 28 19 18 52 52 H 1.09000 * 109.31132 * 281.29121 * 29 16 15 53 53 H 1.08996 * 109.31173 * 40.71198 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8415 5 8 1.6631 2.0815 -1.2215 6 6 2.0698 3.4482 -1.3147 7 6 3.5967 3.5309 -1.2417 8 6 4.0745 2.8882 0.0656 9 6 3.5657 1.4447 0.1258 10 1 3.8533 0.9963 1.0767 11 6 4.1655 0.6518 -1.0067 12 8 3.4441 0.1291 -1.8298 13 7 5.5033 0.5187 -1.1019 14 6 6.0861 -0.2572 -2.1994 15 6 7.6110 -0.2501 -2.0754 16 6 8.2105 -1.0487 -3.2041 17 6 8.5892 -0.4052 -4.2616 18 6 9.1859 -1.0686 -5.4713 19 7 9.5001 -2.4680 -5.1486 20 6 10.6761 -3.0449 -5.5478 21 1 11.0765 -3.8873 -5.0034 22 6 11.3536 -2.5471 -6.6524 23 7 12.6339 -2.8075 -6.8115 24 14 10.4481 -1.5076 -7.9130 25 1 10.4994 -0.0803 -7.5063 26 1 11.0927 -1.6673 -9.2412 27 1 9.0324 -1.9487 -7.9934 28 6 8.4974 -3.2242 -4.3783 29 6 8.3318 -2.5322 -3.0206 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.7281 3.8654 -2.2620 36 1 1.6354 4.0138 -0.4904 37 1 4.0312 2.9995 -2.0885 38 1 3.9067 4.5756 -1.2682 39 1 3.6802 3.4493 0.9128 40 1 5.1640 2.8925 0.0990 41 1 6.0802 0.9367 -0.4436 42 1 5.7222 -1.2835 -2.1521 43 1 5.7973 0.1873 -3.1518 44 1 7.9746 0.7764 -2.1229 45 1 7.9001 -0.6942 -1.1229 46 1 8.4702 0.6681 -4.2752 47 1 8.4716 -1.0361 -6.2941 48 1 10.0981 -0.5468 -5.7602 49 1 13.1074 -2.4593 -7.5832 50 1 7.5475 -3.2280 -4.9129 51 1 8.8412 -4.2480 -4.2302 52 1 9.1969 -2.7483 -2.3938 53 1 7.4332 -2.9097 -2.5326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160324086.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:21 Heat of formation + Delta-G solvation = -77.919122 kcal Electronic energy + Delta-G solvation = -29952.015892 eV Core-core repulsion = 26016.130858 eV Total energy + Delta-G solvation = -3935.885034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67617 -39.85091 -39.14795 -36.79520 -35.38158 -34.69416 -34.59235 -33.40368 -31.92464 -31.16903 -30.17642 -27.16396 -26.26025 -25.32356 -24.96017 -23.84610 -22.71015 -22.51497 -22.20115 -20.56515 -19.62855 -18.04663 -17.76592 -17.40401 -17.31849 -16.88169 -16.83223 -16.38582 -16.10226 -15.67298 -15.55818 -15.42380 -15.17034 -14.99655 -14.56904 -14.45081 -14.32065 -14.20355 -14.05347 -13.73851 -13.54045 -13.39691 -13.26702 -13.07301 -12.80340 -12.66710 -12.58760 -12.55117 -12.32188 -12.14662 -12.09014 -11.99842 -11.72675 -11.52362 -11.48684 -11.37030 -11.25721 -10.75334 -10.51355 -10.25328 -9.99318 -9.66171 -8.99966 -8.18426 -5.49119 1.25748 1.30779 1.38323 1.46915 1.75537 2.25712 2.38957 2.95974 3.03415 3.30318 3.56291 3.73450 3.79347 3.88123 3.98279 4.00797 4.06946 4.16618 4.25340 4.27413 4.33975 4.40877 4.43171 4.47972 4.49514 4.58169 4.62186 4.62836 4.67285 4.74894 4.76926 4.82504 4.89437 4.91171 4.93043 4.97029 5.02229 5.06185 5.12618 5.13696 5.14659 5.26361 5.30655 5.38294 5.44256 5.63718 5.71757 5.82158 6.05210 6.17163 6.45718 6.64579 6.85806 7.39983 7.58164 8.01877 9.01518 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.002197 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.130253 B =12740.204134 C =13059.158041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.109 3.891 4 H 0.084 0.916 5 O -0.392 6.392 6 C 0.052 3.948 7 C -0.159 4.159 8 C -0.109 4.109 9 C -0.139 4.139 10 H 0.133 0.867 11 C 0.514 3.486 12 O -0.563 6.563 13 N -0.720 5.720 14 C 0.135 3.865 15 C -0.080 4.080 16 C -0.107 4.107 17 C -0.176 4.176 18 C 0.142 3.858 19 N -0.624 5.624 20 C -0.243 4.243 21 H 0.057 0.943 22 C -0.037 4.037 23 N -0.957 5.957 24 Si 0.946 3.054 25 H -0.270 1.270 26 H -0.309 1.309 27 H -0.270 1.270 28 C 0.137 3.863 29 C -0.091 4.091 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.414 0.586 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.031 0.969 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.036 0.964 51 H 0.061 0.939 52 H 0.068 0.932 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.532 15.484 22.269 35.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.052 3.948 4 H 0.102 0.898 5 O -0.311 6.311 6 C -0.024 4.024 7 C -0.197 4.197 8 C -0.146 4.146 9 C -0.160 4.160 10 H 0.151 0.849 11 C 0.301 3.699 12 O -0.441 6.441 13 N -0.374 5.374 14 C 0.011 3.989 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.195 4.195 18 C 0.018 3.982 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.075 0.925 22 C -0.232 4.232 23 N -0.603 5.603 24 Si 0.775 3.225 25 H -0.196 1.196 26 H -0.238 1.238 27 H -0.195 1.195 28 C 0.012 3.988 29 C -0.130 4.130 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.251 0.749 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.141 0.859 47 H 0.048 0.952 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.054 0.946 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.019 15.007 21.442 34.855 hybrid contribution 0.690 0.368 -1.082 1.335 sum -22.328 15.375 20.360 33.904 Atomic orbital electron populations 1.21639 0.95201 1.01469 1.01624 1.21863 0.96891 0.95128 1.03439 1.22017 0.91137 0.94422 0.87272 0.89844 1.88049 1.78410 1.25219 1.39415 1.22701 0.94162 0.82950 1.02635 1.22231 0.96829 1.02530 0.98093 1.21682 1.02294 0.92215 0.98459 1.22189 0.97513 0.97737 0.98584 0.84920 1.20949 0.82013 0.80120 0.86817 1.90675 1.60686 1.49145 1.43585 1.45951 1.06863 1.54356 1.30206 1.21079 0.92598 0.95647 0.89568 1.20819 0.92622 1.00520 0.97755 1.20647 0.99044 0.95716 0.95430 1.22480 1.01337 1.00038 0.95678 1.20242 0.97621 0.84947 0.95396 1.44600 1.18177 1.07466 1.64627 1.18864 0.96540 1.14186 1.07691 0.92519 1.25826 0.96352 1.01262 0.99736 1.69950 1.08700 1.50745 1.30945 0.85989 0.78691 0.79239 0.78560 1.19607 1.23781 1.19536 1.21254 0.91009 0.95046 0.91477 1.20775 1.02025 0.92414 0.97755 0.91700 0.93910 0.92773 0.91221 0.89810 0.89564 0.91223 0.94047 0.88727 0.88062 0.89328 0.74944 0.92539 0.93661 0.89604 0.88834 0.85867 0.95175 0.92414 0.92920 0.94613 0.92008 0.91368 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.81 71.98 0.71 -1.63 16 2 C -0.14 -2.45 5.21 30.59 0.16 -2.29 16 3 C 0.11 1.69 2.22 30.62 0.07 1.75 16 4 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 5 O -0.39 -8.32 9.01 -133.14 -1.20 -9.52 16 6 C 0.05 0.75 6.84 72.01 0.49 1.25 16 7 C -0.16 -1.97 5.88 30.73 0.18 -1.79 16 8 C -0.11 -0.85 5.47 30.76 0.17 -0.68 16 9 C -0.14 -1.67 2.59 -11.45 -0.03 -1.70 16 10 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 11 C 0.51 10.23 5.64 87.66 0.49 10.73 16 12 O -0.56 -16.88 12.92 12.79 0.17 -16.72 16 13 N -0.72 -11.51 5.44 -463.07 -2.52 -14.03 16 14 C 0.14 2.86 5.66 86.38 0.49 3.35 16 15 C -0.08 -1.56 5.32 29.85 0.16 -1.40 16 16 C -0.11 -3.16 5.11 -15.14 -0.08 -3.23 16 17 C -0.18 -6.03 9.47 27.10 0.26 -5.78 16 18 C 0.14 6.30 4.38 85.42 0.37 6.67 16 19 N -0.62 -30.45 2.80 -703.03 -1.97 -32.42 16 20 C -0.24 -14.17 10.14 84.03 0.85 -13.32 16 21 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 22 C -0.04 -2.23 5.26 84.86 0.45 -1.78 16 23 N -0.96 -61.09 13.97 21.65 0.30 -60.79 16 24 Si 0.95 47.98 24.17 68.60 1.66 49.64 16 25 H -0.27 -12.77 6.48 99.48 0.64 -12.13 16 26 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 27 H -0.27 -13.41 6.59 99.48 0.66 -12.76 16 28 C 0.14 5.39 6.59 86.32 0.57 5.96 16 29 C -0.09 -2.82 5.95 29.71 0.18 -2.64 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.85 7.83 -2.38 -0.02 0.83 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.81 5.45 -2.39 -0.01 1.80 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.04 0.78 7.39 -2.39 -0.02 0.76 16 38 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.09 0.44 7.49 -2.39 -0.02 0.43 16 41 H 0.41 3.73 7.86 -92.71 -0.73 3.00 16 42 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.46 7.78 -2.39 -0.02 1.44 16 45 H 0.09 1.49 8.11 -2.39 -0.02 1.48 16 46 H 0.12 3.53 7.73 -2.91 -0.02 3.51 16 47 H 0.03 1.37 6.38 -2.38 -0.02 1.35 16 48 H 0.06 2.79 5.05 -2.39 -0.01 2.78 16 49 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 50 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 52 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -78.23 399.36 1.96 -76.27 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.04 Total: 14.09 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.49 Total: -6.53 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.19 Total: -107.24 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -1.03 Total: -26.24 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.66 Total: 49.64 kcal Total: -78.23 1.96 -76.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160324086.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.646 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds