Wall clock time and date at job start Tue Mar 31 2020 19:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 H 1.09003 * 109.48541 * 54.97104 * 3 2 1 5 5 C 1.53087 * 109.48059 * 175.00174 * 3 2 1 6 6 C 1.53185 * 109.16178 * 177.59347 * 5 3 2 7 7 H 1.08996 * 109.54401 * 183.06134 * 6 5 3 8 8 C 1.50701 * 109.54448 * 62.88604 * 6 5 3 9 9 O 1.21282 * 119.99826 * 0.17487 * 8 6 5 10 10 N 1.34772 * 119.99935 * 180.18325 * 8 6 5 11 11 C 1.46497 * 120.00242 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47571 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47264 * 179.97438 * 12 11 10 14 14 C 1.29458 * 117.69149 * 94.73632 * 13 12 11 15 15 C 1.50322 * 123.64798 * 180.58630 * 14 13 12 16 16 N 1.47003 * 109.20405 * 349.49975 * 15 14 13 17 17 C 1.36942 * 121.37264 * 222.76199 * 16 15 14 18 18 H 1.08003 * 119.99606 * 155.34415 * 17 16 15 19 19 C 1.38809 * 120.00123 * 335.34206 * 17 16 15 20 20 N 1.31621 * 119.99915 * 159.83434 * 19 17 16 21 21 Si 1.86799 * 119.99997 * 339.83228 * 19 17 16 22 22 H 1.48507 * 109.46814 * 88.37583 * 21 19 17 23 23 H 1.48501 * 109.47325 * 208.37299 * 21 19 17 24 24 H 1.48498 * 109.47520 * 328.37773 * 21 19 17 25 25 C 1.47335 * 117.24878 * 42.74076 * 16 15 14 26 26 C 1.49960 * 117.69243 * 274.99691 * 13 12 11 27 27 C 1.53179 * 109.10740 * 302.97479 * 6 5 3 28 28 C 1.53278 * 109.06556 * 56.94086 * 27 6 5 29 29 O 1.42899 * 109.48068 * 294.94670 * 3 2 1 30 30 H 1.08994 * 109.47352 * 60.00005 * 1 2 3 31 31 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47089 * 299.99940 * 1 2 3 33 33 H 1.08997 * 109.47089 * 240.00060 * 2 1 3 34 34 H 1.09004 * 109.47408 * 119.99909 * 2 1 3 35 35 H 1.08990 * 109.52601 * 57.68564 * 5 3 2 36 36 H 1.08999 * 109.52339 * 297.49711 * 5 3 2 37 37 H 0.97000 * 120.00008 * 359.97438 * 10 8 6 38 38 H 1.08998 * 109.47051 * 59.98992 * 11 10 8 39 39 H 1.08999 * 109.46871 * 299.99481 * 11 10 8 40 40 H 1.09003 * 109.46578 * 299.99298 * 12 11 10 41 41 H 1.08998 * 109.47587 * 59.99528 * 12 11 10 42 42 H 1.07991 * 118.17761 * 0.85887 * 14 13 12 43 43 H 1.09001 * 109.66940 * 229.47753 * 15 14 13 44 44 H 1.08999 * 109.38404 * 109.35086 * 15 14 13 45 45 H 0.96999 * 119.99960 * 179.97438 * 20 19 17 46 46 H 1.09009 * 109.77727 * 178.61799 * 25 16 15 47 47 H 1.09004 * 109.82466 * 57.84025 * 25 16 15 48 48 H 1.09004 * 109.31546 * 281.29022 * 26 13 12 49 49 H 1.08996 * 109.32169 * 40.71356 * 26 13 12 50 50 H 1.08993 * 109.52316 * 176.93323 * 27 6 5 51 51 H 1.09001 * 109.51938 * 297.12178 * 27 6 5 52 52 H 1.09000 * 109.46076 * 182.45065 * 28 27 6 53 53 H 1.09001 * 109.46618 * 62.44723 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8415 5 6 3.5657 1.4445 0.1257 6 6 4.0734 2.8885 0.0645 7 1 5.1628 2.8938 0.0988 8 6 3.5284 3.6646 1.2357 9 8 2.8075 3.1174 2.0431 10 7 3.8420 4.9667 1.3859 11 6 3.3127 5.7210 2.5247 12 6 3.8174 7.1639 2.4597 13 6 3.2724 7.9400 3.6309 14 6 4.0146 8.0352 4.6873 15 6 3.5993 8.7652 5.9340 16 7 2.3765 9.5337 5.6597 17 6 2.2217 10.8148 6.1182 18 1 1.5508 11.4924 5.6110 19 6 2.9269 11.2424 7.2347 20 7 3.1023 12.5291 7.4493 21 14 3.6270 9.9917 8.4327 22 1 4.9874 9.5914 7.9916 23 1 3.7032 10.5933 9.7882 24 1 2.7472 8.7960 8.4705 25 6 1.3247 8.8688 4.8708 26 6 1.9061 8.5424 3.4926 27 6 3.5987 3.5319 -1.2421 28 6 2.0700 3.4479 -1.3150 29 8 1.6632 2.0812 -1.2215 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9995 0.8709 -0.6932 36 1 3.8534 0.9973 1.0772 37 1 4.4188 5.4042 0.7403 38 1 3.6489 5.2603 3.4535 39 1 2.2233 5.7150 2.4897 40 1 4.9069 7.1696 2.4950 41 1 3.4816 7.6249 1.5309 42 1 4.9880 7.5678 4.6705 43 1 4.3941 9.4437 6.2439 44 1 3.4059 8.0441 6.7281 45 1 3.5948 12.8279 8.2297 46 1 0.4688 9.5350 4.7617 47 1 1.0153 7.9494 5.3678 48 1 1.9734 9.4573 2.9038 49 1 1.2506 7.8364 2.9828 50 1 3.9099 4.5761 -1.2679 51 1 4.0331 3.0003 -2.0887 52 1 1.7282 3.8649 -2.2623 53 1 1.6354 4.0137 -0.4909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161654992.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:00 Heat of formation + Delta-G solvation = -84.043815 kcal Electronic energy + Delta-G solvation = -29705.912124 eV Core-core repulsion = 25769.761504 eV Total energy + Delta-G solvation = -3936.150620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71727 -39.87415 -39.29265 -36.84372 -35.38194 -34.83956 -34.61200 -33.43606 -31.93872 -30.80141 -30.39075 -27.46602 -26.41884 -25.13511 -24.66001 -24.05871 -22.98309 -22.57000 -22.11942 -20.61914 -19.63145 -17.94363 -17.58700 -17.39775 -17.38308 -17.27795 -16.87763 -16.49520 -16.08196 -15.65671 -15.61990 -15.36798 -15.19168 -15.02304 -14.66535 -14.53682 -14.34062 -14.32094 -14.09373 -13.75432 -13.55735 -13.33716 -13.17499 -13.08389 -12.82309 -12.73930 -12.66036 -12.53545 -12.33503 -12.15069 -12.09574 -12.00269 -11.85302 -11.61981 -11.52332 -11.42911 -11.30825 -10.80964 -10.71322 -10.23317 -10.07689 -9.66887 -9.00190 -8.18515 -5.49414 1.25605 1.30252 1.38411 1.46983 1.60711 2.20704 2.38868 2.86920 3.03210 3.29949 3.53525 3.69345 3.79999 3.87319 3.93214 3.99123 4.05107 4.12323 4.23703 4.25490 4.30163 4.40310 4.43767 4.47576 4.51661 4.57374 4.60501 4.62920 4.67144 4.71489 4.81584 4.84463 4.88900 4.90620 4.92512 4.96450 5.01863 5.03841 5.08372 5.11212 5.12122 5.17626 5.29017 5.30401 5.39736 5.46535 5.70914 5.81809 6.04853 6.16903 6.33244 6.54888 6.85661 7.25505 7.57973 8.01443 9.01388 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.002066 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.931625 B =13549.925235 C =13675.665428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.053 0.947 5 C -0.128 4.128 6 C -0.108 4.108 7 H 0.130 0.870 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.715 5.715 11 C 0.132 3.868 12 C -0.080 4.080 13 C -0.108 4.108 14 C -0.176 4.176 15 C 0.142 3.858 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.056 0.944 19 C -0.038 4.038 20 N -0.957 5.957 21 Si 0.947 3.053 22 H -0.269 1.269 23 H -0.309 1.309 24 H -0.270 1.270 25 C 0.137 3.863 26 C -0.092 4.092 27 C -0.139 4.139 28 C 0.051 3.949 29 O -0.393 6.393 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.112 0.888 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -24.843 -22.854 34.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.020 3.980 4 H 0.071 0.929 5 C -0.166 4.166 6 C -0.129 4.129 7 H 0.148 0.852 8 C 0.296 3.704 9 O -0.459 6.459 10 N -0.368 5.368 11 C 0.008 3.992 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.195 4.195 15 C 0.017 3.983 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.074 0.926 19 C -0.232 4.232 20 N -0.603 5.603 21 Si 0.776 3.224 22 H -0.196 1.196 23 H -0.238 1.238 24 H -0.195 1.195 25 C 0.012 3.988 26 C -0.130 4.130 27 C -0.176 4.176 28 C -0.026 4.026 29 O -0.313 6.313 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.119 0.881 52 H 0.130 0.870 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.675 -25.195 -22.327 33.864 hybrid contribution 0.497 0.589 1.388 1.588 sum 4.172 -24.606 -20.939 32.577 Atomic orbital electron populations 1.21690 0.95616 1.01934 1.01312 1.21544 0.96556 0.93998 1.03018 1.22366 0.94417 0.94556 0.86628 0.92915 1.21993 0.95919 0.95210 1.03461 1.21507 1.03485 0.95193 0.92758 0.85235 1.21208 0.79953 0.82266 0.86942 1.90676 1.38856 1.69954 1.46398 1.45941 1.51938 1.10376 1.28516 1.21141 0.98451 0.90821 0.88757 1.20825 1.01413 0.92247 0.97288 1.20633 0.96391 0.98549 0.95316 1.22492 1.00582 1.01066 0.95319 1.20251 0.88853 0.93649 0.95498 1.44591 1.14550 1.12628 1.63089 1.18857 1.24447 0.86789 1.07216 0.92591 1.25837 1.00729 0.97176 0.99502 1.69953 1.45270 1.15113 1.30004 0.85977 0.78916 0.79342 0.78165 1.19555 1.23809 1.19489 1.21212 0.90706 0.95668 0.91208 1.20742 0.94283 1.00302 0.97684 1.22238 0.95954 1.03160 0.96265 1.22748 0.94849 0.82734 1.02259 1.87873 1.79305 1.25127 1.38945 0.92893 0.91478 0.94021 0.90492 0.90208 0.88703 0.91064 0.74611 0.93100 0.92596 0.89385 0.88826 0.85685 0.92399 0.95144 0.92923 0.92075 0.94632 0.91448 0.89063 0.88041 0.88086 0.87049 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.81 71.98 0.71 -1.76 16 2 C -0.11 -1.82 5.64 30.59 0.17 -1.65 16 3 C 0.08 1.47 2.35 30.62 0.07 1.54 16 4 H 0.05 1.35 5.81 -2.39 -0.01 1.34 16 5 C -0.13 -1.83 4.56 30.69 0.14 -1.69 16 6 C -0.11 -1.25 3.04 -11.42 -0.03 -1.28 16 7 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 8 C 0.51 9.44 5.82 87.66 0.51 9.95 16 9 O -0.58 -16.24 13.85 -3.04 -0.04 -16.28 16 10 N -0.72 -10.40 5.43 -463.08 -2.52 -12.92 16 11 C 0.13 2.61 5.66 86.38 0.49 3.10 16 12 C -0.08 -1.48 5.32 29.85 0.16 -1.32 16 13 C -0.11 -3.08 5.11 -15.14 -0.08 -3.16 16 14 C -0.18 -5.85 9.47 27.10 0.26 -5.59 16 15 C 0.14 6.18 4.39 85.42 0.37 6.55 16 16 N -0.62 -30.13 2.81 -703.39 -1.97 -32.11 16 17 C -0.24 -14.10 10.14 84.03 0.85 -13.25 16 18 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.04 -2.26 5.26 84.86 0.45 -1.81 16 20 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 21 Si 0.95 47.58 24.17 68.60 1.66 49.24 16 22 H -0.27 -12.60 6.48 99.48 0.64 -11.96 16 23 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 24 H -0.27 -13.23 6.59 99.48 0.66 -12.58 16 25 C 0.14 5.32 6.58 86.25 0.57 5.89 16 26 C -0.09 -2.78 5.94 29.65 0.18 -2.61 16 27 C -0.14 -1.13 5.58 30.75 0.17 -0.96 16 28 C 0.05 0.72 6.62 72.08 0.48 1.19 16 29 O -0.39 -7.49 9.95 -148.98 -1.48 -8.97 16 30 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.15 8.02 -2.39 -0.02 1.13 16 37 H 0.42 3.12 7.87 -92.71 -0.73 2.39 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 40 H 0.09 1.38 7.79 -2.39 -0.02 1.37 16 41 H 0.09 1.40 8.11 -2.39 -0.02 1.38 16 42 H 0.13 3.44 7.74 -2.92 -0.02 3.42 16 43 H 0.06 2.76 5.05 -2.39 -0.01 2.75 16 44 H 0.03 1.35 6.38 -2.39 -0.02 1.34 16 45 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.06 2.39 7.96 -2.38 -0.02 2.37 16 47 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 50 H 0.10 0.38 7.51 -2.39 -0.02 0.36 16 51 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.03 0.51 7.38 -2.39 -0.02 0.49 16 Total: -1.00 -76.23 401.18 1.44 -74.79 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.04 Total: 13.63 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.46 Total: -6.86 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.19 Total: -105.56 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.52 Total: -25.25 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.66 Total: 49.24 kcal Total: -76.23 1.44 -74.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161654992.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.250 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds