Wall clock time and date at job start Tue Mar 31 2020 19:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 H 1.09005 * 109.48078 * 55.02817 * 3 2 1 5 5 C 1.53096 * 109.48251 * 175.05849 * 3 2 1 6 6 C 1.53170 * 109.16416 * 177.59058 * 5 3 2 7 7 H 1.09004 * 109.53981 * 62.89249 * 6 5 3 8 8 C 1.50706 * 109.61704 * 183.10750 * 6 5 3 9 9 O 1.21283 * 119.99775 * 359.60695 * 8 6 5 10 10 N 1.34771 * 120.00029 * 179.60067 * 8 6 5 11 11 C 1.46503 * 119.99801 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46812 * 180.02562 * 11 10 8 13 13 C 1.50707 * 109.46961 * 180.02562 * 12 11 10 14 14 C 1.29453 * 117.69419 * 94.99433 * 13 12 11 15 15 C 1.50325 * 123.64895 * 180.85366 * 14 13 12 16 16 N 1.47009 * 109.16798 * 349.03114 * 15 14 13 17 17 C 1.36936 * 121.37723 * 222.96874 * 16 15 14 18 18 H 1.07994 * 120.00323 * 155.97139 * 17 16 15 19 19 C 1.38817 * 119.99507 * 335.96897 * 17 16 15 20 20 N 1.31622 * 119.99894 * 344.51721 * 19 17 16 21 21 Si 1.86793 * 119.99843 * 164.52547 * 19 17 16 22 22 H 1.48496 * 109.47497 * 59.99587 * 21 19 17 23 23 H 1.48505 * 109.46899 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47146 * 299.99198 * 21 19 17 25 25 C 1.47344 * 117.24836 * 42.94029 * 16 15 14 26 26 C 1.49964 * 117.69174 * 274.73498 * 13 12 11 27 27 C 1.53169 * 109.04163 * 303.02498 * 6 5 3 28 28 C 1.53086 * 109.16493 * 56.97719 * 27 6 5 29 29 O 1.42903 * 109.41734 * 302.39196 * 28 27 6 30 30 H 1.09005 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47034 * 299.99317 * 1 2 3 32 32 H 1.08995 * 109.47614 * 59.99830 * 1 2 3 33 33 H 1.08998 * 109.47571 * 120.00942 * 2 1 3 34 34 H 1.09007 * 109.46681 * 240.00272 * 2 1 3 35 35 H 1.08994 * 109.52327 * 297.50268 * 5 3 2 36 36 H 1.09006 * 109.51612 * 57.68834 * 5 3 2 37 37 H 0.97003 * 120.00490 * 0.02562 * 10 8 6 38 38 H 1.09004 * 109.47194 * 300.00199 * 11 10 8 39 39 H 1.08994 * 109.47280 * 60.00478 * 11 10 8 40 40 H 1.09004 * 109.46945 * 299.99790 * 12 11 10 41 41 H 1.08995 * 109.47774 * 60.00035 * 12 11 10 42 42 H 1.08001 * 118.17811 * 0.83884 * 14 13 12 43 43 H 1.09007 * 109.51694 * 108.92807 * 15 14 13 44 44 H 1.08993 * 109.52886 * 229.05630 * 15 14 13 45 45 H 0.96996 * 119.99938 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.77992 * 57.81206 * 25 16 15 47 47 H 1.08997 * 109.77690 * 178.56890 * 25 16 15 48 48 H 1.09000 * 109.31955 * 281.28973 * 26 13 12 49 49 H 1.09007 * 109.31751 * 40.71650 * 26 13 12 50 50 H 1.09007 * 109.51849 * 297.07395 * 27 6 5 51 51 H 1.08999 * 109.52804 * 176.88475 * 27 6 5 52 52 H 1.09000 * 109.48179 * 182.40936 * 28 27 6 53 53 H 1.09002 * 109.48093 * 62.37754 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9815 0.8421 5 6 3.5659 1.4445 0.1243 6 6 4.0734 2.8884 0.0630 7 1 3.6800 3.4494 0.9108 8 6 5.5798 2.8975 0.1079 9 8 6.1904 1.8527 0.1888 10 7 6.2483 4.0667 0.0578 11 6 7.7127 4.0755 0.1008 12 6 8.2162 5.5185 0.0302 13 6 9.7226 5.5275 0.0738 14 6 10.3570 5.5633 -1.0541 15 6 11.8560 5.5581 -1.1673 16 7 12.4413 5.7720 0.1642 17 6 13.5033 6.6165 0.3489 18 1 13.6761 7.0632 1.3168 19 6 14.3578 6.8982 -0.7082 20 7 14.3442 6.1417 -1.7851 21 14 15.5272 8.3510 -0.6020 22 1 16.4377 8.1700 0.5570 23 1 16.3267 8.4351 -1.8507 24 1 14.7472 9.6026 -0.4280 25 6 11.8376 5.0406 1.2919 26 6 10.3810 5.5005 1.4209 27 6 3.5957 3.5310 -1.2427 28 6 2.0687 3.4484 -1.3142 29 8 1.6620 2.0816 -1.2210 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5140 0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 3.8544 0.9970 1.0753 36 1 3.9988 0.8711 -0.6954 37 1 5.7600 4.9023 -0.0067 38 1 8.0517 3.6178 1.0302 39 1 8.1044 3.5117 -0.7458 40 1 7.8773 5.9765 -0.8991 41 1 7.8245 6.0820 0.8769 42 1 9.7770 5.5987 -1.9645 43 1 12.1881 4.5974 -1.5610 44 1 12.1735 6.3561 -1.8383 45 1 14.9416 6.3383 -2.5236 46 1 11.8741 3.9687 1.0982 47 1 12.3782 5.2680 2.2106 48 1 10.3517 6.4991 1.8567 49 1 9.8433 4.8105 2.0712 50 1 4.0293 2.9997 -2.0900 51 1 3.9055 4.5757 -1.2693 52 1 1.7260 3.8658 -2.2610 53 1 1.6351 4.0138 -0.4893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161654993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:04 Heat of formation + Delta-G solvation = -91.761228 kcal Electronic energy + Delta-G solvation = -28917.152748 eV Core-core repulsion = 24980.667475 eV Total energy + Delta-G solvation = -3936.485272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41811 -39.89964 -39.39102 -36.77317 -35.28853 -34.87593 -34.64207 -33.10928 -31.50272 -30.75365 -30.23053 -27.59269 -26.51792 -24.84268 -24.49463 -23.93838 -22.85211 -22.47293 -21.75088 -20.85513 -19.46817 -18.23935 -17.64767 -17.41075 -17.09096 -17.00602 -16.72825 -16.33780 -15.78969 -15.70708 -15.51557 -15.27468 -15.20061 -14.90140 -14.59421 -14.52332 -14.38289 -14.23212 -13.91567 -13.74542 -13.39059 -13.21568 -12.86259 -12.78657 -12.73968 -12.71096 -12.57967 -12.38424 -12.35028 -12.21131 -12.11032 -11.89954 -11.79428 -11.68529 -11.60827 -11.36143 -11.23605 -10.91272 -10.68348 -10.37849 -10.12526 -9.49784 -8.76125 -7.88657 -5.31096 1.40474 1.46323 1.48995 1.55897 1.58575 2.18580 2.50710 2.88071 3.27936 3.54364 3.58929 3.67116 3.76533 3.93464 3.95528 4.06667 4.11933 4.14554 4.18286 4.28279 4.38652 4.42375 4.45943 4.53165 4.54413 4.57609 4.67874 4.72784 4.75091 4.83373 4.85199 4.90128 4.91418 4.96460 5.05663 5.09530 5.12646 5.14220 5.16590 5.19596 5.22433 5.31888 5.39892 5.42311 5.47075 5.49150 5.59810 5.86827 6.27338 6.32667 6.34877 6.53959 7.12240 7.23650 7.82324 8.37441 9.19815 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.036109 B = 0.001677 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.243256 B =16697.427250 C =16912.586160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.095 3.905 4 H 0.076 0.924 5 C -0.129 4.129 6 C -0.101 4.101 7 H 0.128 0.872 8 C 0.512 3.488 9 O -0.589 6.589 10 N -0.713 5.713 11 C 0.132 3.868 12 C -0.077 4.077 13 C -0.121 4.121 14 C -0.175 4.175 15 C 0.206 3.794 16 N -0.614 5.614 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.056 4.056 20 N -0.942 5.942 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.134 3.866 26 C -0.087 4.087 27 C -0.144 4.144 28 C 0.061 3.939 29 O -0.397 6.397 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.417 0.583 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.250 0.750 46 H 0.016 0.984 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.056 0.944 51 H 0.105 0.895 52 H 0.109 0.891 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.607 -3.865 4.879 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.094 0.906 5 C -0.167 4.167 6 C -0.123 4.123 7 H 0.145 0.855 8 C 0.299 3.701 9 O -0.469 6.469 10 N -0.366 5.366 11 C 0.008 3.992 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.194 4.194 15 C 0.081 3.919 16 N -0.339 5.339 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.589 5.589 21 Si 0.800 3.200 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.009 3.991 26 C -0.125 4.125 27 C -0.182 4.182 28 C -0.016 4.016 29 O -0.316 6.316 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.123 0.877 52 H 0.127 0.873 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -31.151 -4.669 4.669 31.843 hybrid contribution 1.531 0.769 -0.358 1.751 sum -29.620 -3.900 4.311 30.185 Atomic orbital electron populations 1.21679 0.94489 1.01976 1.02112 1.21583 0.97242 0.94105 1.02817 1.22202 0.92000 0.94718 0.87340 0.90595 1.22015 0.96447 0.95231 1.03014 1.21412 0.89594 0.99283 1.01964 0.85452 1.21179 0.91091 0.83105 0.74714 1.90711 1.71273 1.33652 1.51224 1.45917 1.07014 1.09341 1.74300 1.21152 0.79624 0.97288 1.01177 1.20798 0.91350 0.94995 1.04317 1.20603 0.95126 1.01762 0.94736 1.22822 0.96774 1.01525 0.98280 1.19349 0.87864 0.97459 0.87211 1.44410 1.35004 1.50698 1.03741 1.19523 1.03037 1.18906 0.97557 0.91060 1.25811 0.99790 1.01784 0.97705 1.70196 1.41243 1.39305 1.08108 0.85261 0.78472 0.79570 0.76672 1.20058 1.22063 1.20301 1.21193 0.93403 0.93606 0.90887 1.20742 0.95580 1.01617 0.94563 1.22222 0.98079 1.02542 0.95323 1.22728 0.92294 0.82571 1.03978 1.87933 1.78576 1.25875 1.39260 0.92183 0.92053 0.92916 0.89650 0.92349 0.90674 0.92901 0.74500 0.92476 0.93693 0.89749 0.88692 0.86946 0.98170 0.92646 0.94145 0.96583 0.92233 0.91153 0.89693 0.92477 0.87691 0.87337 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.81 71.98 0.71 -0.86 16 2 C -0.12 -1.53 5.64 30.59 0.17 -1.35 16 3 C 0.09 1.25 2.64 30.63 0.08 1.33 16 4 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 5 C -0.13 -2.14 4.02 30.68 0.12 -2.02 16 6 C -0.10 -1.38 2.61 -11.42 -0.03 -1.41 16 7 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 8 C 0.51 10.99 7.16 87.66 0.63 11.62 16 9 O -0.59 -18.95 15.98 -3.04 -0.05 -19.00 16 10 N -0.71 -12.31 5.46 -463.05 -2.53 -14.84 16 11 C 0.13 3.06 5.66 86.38 0.49 3.55 16 12 C -0.08 -1.66 5.32 29.85 0.16 -1.50 16 13 C -0.12 -3.91 5.11 -15.14 -0.08 -3.99 16 14 C -0.17 -6.74 9.47 27.11 0.26 -6.48 16 15 C 0.21 10.46 5.23 85.42 0.45 10.90 16 16 N -0.61 -32.00 3.01 -703.01 -2.11 -34.11 16 17 C -0.26 -14.65 9.71 84.03 0.82 -13.84 16 18 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 19 C -0.06 -3.21 5.01 84.86 0.43 -2.78 16 20 N -0.94 -57.05 11.08 21.65 0.24 -56.81 16 21 Si 0.97 45.46 29.58 68.60 2.03 47.49 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C 0.13 5.70 6.59 86.31 0.57 6.27 16 26 C -0.09 -2.85 5.95 29.71 0.18 -2.67 16 27 C -0.14 -1.51 5.29 30.68 0.16 -1.35 16 28 C 0.06 0.56 6.84 72.01 0.49 1.05 16 29 O -0.40 -6.02 9.94 -148.98 -1.48 -7.50 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.17 8.03 -2.38 -0.02 1.15 16 37 H 0.42 3.98 7.96 -92.71 -0.74 3.24 16 38 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.60 7.78 -2.39 -0.02 1.58 16 41 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 42 H 0.11 3.78 7.73 -2.91 -0.02 3.76 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.06 3.14 6.41 -2.39 -0.02 3.12 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.08 2.30 8.10 -2.38 -0.02 2.28 16 50 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 51 H 0.10 0.56 7.67 -2.39 -0.02 0.54 16 52 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -75.16 414.29 1.82 -73.34 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.13 Total: 14.96 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.60 Total: -3.53 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.40 Total: -105.76 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.53 Total: -26.50 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.16 1.82 -73.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161654993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.422 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds