Wall clock time and date at job start Tue Mar 31 2020 20:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47462 * 2 1 4 4 H 1.09005 * 109.46713 * 299.09505 * 3 2 1 5 5 C 1.50690 * 109.47481 * 179.09114 * 3 2 1 6 6 H 1.07997 * 120.00135 * 245.66343 * 5 3 2 7 7 C 1.37883 * 120.00021 * 65.66535 * 5 3 2 8 8 N 1.31515 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00067 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47604 * 59.99696 * 9 7 5 11 11 H 1.48495 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47021 * 299.99725 * 9 7 5 13 13 N 1.46900 * 109.46910 * 59.09020 * 3 2 1 14 14 C 1.46645 * 110.99901 * 66.26468 * 13 3 2 15 15 C 1.53348 * 108.18259 * 186.44123 * 14 13 3 16 16 H 1.08996 * 109.69739 * 56.52526 * 15 14 13 17 17 C 1.50701 * 109.73002 * 177.10699 * 15 14 13 18 18 O 1.21273 * 120.00089 * 84.37195 * 17 15 14 19 19 N 1.34776 * 119.99594 * 264.37535 * 17 15 14 20 20 C 1.47023 * 125.65020 * 4.94843 * 19 17 15 21 21 C 1.54323 * 107.27539 * 180.97240 * 20 19 17 22 22 C 1.55158 * 102.86116 * 22.52941 * 21 20 19 23 23 C 1.47423 * 125.64793 * 185.26739 * 19 17 15 24 24 C 1.52736 * 108.29493 * 296.82277 * 15 14 13 25 25 C 1.53177 * 110.58722 * 60.02567 * 24 15 14 26 26 H 1.08995 * 111.52589 * 73.74333 * 25 24 15 27 27 O 1.44753 * 106.46201 * 196.85871 * 25 24 15 28 28 C 1.43406 * 109.51703 * 89.15753 * 27 25 24 29 29 C 1.54711 * 107.56214 * 4.21661 * 28 27 25 30 30 C 1.44590 * 110.99928 * 193.72331 * 13 3 2 31 31 H 1.09002 * 109.63518 * 57.78547 * 30 13 3 32 32 H 1.09005 * 109.46876 * 60.00313 * 1 2 3 33 33 H 1.09001 * 109.46759 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47394 * 299.99943 * 1 2 3 35 35 H 1.09007 * 109.47250 * 239.99977 * 2 1 3 36 36 H 1.09000 * 109.47077 * 120.00399 * 2 1 3 37 37 H 0.97000 * 119.99635 * 180.02562 * 8 7 5 38 38 H 1.08994 * 109.71955 * 66.77068 * 14 13 3 39 39 H 1.09000 * 109.72028 * 306.11216 * 14 13 3 40 40 H 1.08995 * 109.88776 * 300.51977 * 20 19 17 41 41 H 1.09002 * 109.87903 * 61.68524 * 20 19 17 42 42 H 1.08997 * 110.92104 * 264.11178 * 21 20 19 43 43 H 1.08998 * 110.74186 * 140.86084 * 21 20 19 44 44 H 1.09002 * 111.00105 * 206.22842 * 22 21 20 45 45 H 1.09000 * 111.00053 * 82.37825 * 22 21 20 46 46 H 1.09008 * 110.36273 * 274.66820 * 23 19 17 47 47 H 1.08999 * 110.37070 * 36.87847 * 23 19 17 48 48 H 1.09006 * 109.25507 * 180.30833 * 24 15 14 49 49 H 1.08996 * 109.25636 * 299.73733 * 24 15 14 50 50 H 1.09006 * 109.83485 * 244.70820 * 28 27 25 51 51 H 1.09004 * 109.91437 * 123.77328 * 28 27 25 52 52 H 1.08998 * 111.01969 * 262.57408 * 29 28 27 53 53 H 1.09001 * 111.01475 * 138.69432 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6900 1.9516 -0.8981 5 6 3.5468 1.4426 0.0225 6 1 4.0740 1.8325 0.8806 7 6 4.2524 0.9448 -1.0524 8 7 3.6104 0.4695 -2.0972 9 14 6.1202 0.9442 -1.0242 10 1 6.5977 0.1336 0.1247 11 1 6.6341 0.3613 -2.2895 12 1 6.6136 2.3380 -0.8856 13 7 1.5325 2.1413 1.1883 14 6 2.1026 1.5744 2.4148 15 6 1.4124 2.2363 3.6136 16 1 0.3344 2.0925 3.5423 17 6 1.9225 1.6273 4.8942 18 8 2.9476 2.0386 5.3951 19 7 1.2396 0.6255 5.4828 20 6 0.0461 -0.0356 4.9349 21 6 -0.4014 -1.0975 5.9614 22 6 0.2230 -0.5828 7.2853 23 6 1.5616 0.0156 6.7858 24 6 1.7355 3.7289 3.5889 25 6 1.2305 4.3678 2.2916 26 1 0.1458 4.4747 2.2942 27 8 1.9131 5.6383 2.1673 28 6 3.1457 5.4526 1.4582 29 6 3.2080 3.9732 1.0097 30 6 1.7183 3.5701 1.0680 31 1 1.2144 3.9308 0.1712 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.1068 0.1190 -2.8532 38 1 3.1733 1.7754 2.4498 39 1 1.9287 0.4986 2.4381 40 1 -0.7477 0.6963 4.7859 41 1 0.2911 -0.5177 3.9886 42 1 -0.0045 -2.0794 5.7038 43 1 -1.4885 -1.1296 6.0346 44 1 0.3974 -1.4043 7.9802 45 1 -0.4029 0.1852 7.7398 46 1 2.3063 -0.7709 6.6627 47 1 1.9228 0.7737 7.4807 48 1 1.2563 4.2145 4.4390 49 1 2.8147 3.8643 3.6598 50 1 3.9870 5.6760 2.1143 51 1 3.1740 6.1052 0.5856 52 1 3.8012 3.3787 1.7045 53 1 3.5964 3.8885 -0.0052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:27 Heat of formation + Delta-G solvation = -90.489141 kcal Electronic energy + Delta-G solvation = -32456.121096 eV Core-core repulsion = 28519.690986 eV Total energy + Delta-G solvation = -3936.430111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05085 -40.73921 -38.48011 -38.28861 -35.63953 -33.93485 -33.30100 -32.48342 -31.01231 -30.48057 -29.74408 -28.51989 -25.80292 -25.70156 -24.21531 -23.57453 -22.91210 -22.01258 -21.23166 -20.32302 -19.63950 -18.51377 -18.17561 -17.53677 -17.46591 -17.19482 -16.64889 -16.48570 -15.83699 -15.73903 -15.26419 -14.94716 -14.85372 -14.55127 -14.43256 -14.33199 -14.12425 -13.99088 -13.68118 -13.54815 -13.33888 -13.26195 -13.14570 -13.08040 -12.89222 -12.63875 -12.40113 -12.34845 -12.16011 -12.10486 -11.95700 -11.85923 -11.70124 -11.57975 -11.52073 -11.36146 -11.06653 -10.88057 -10.83445 -10.42297 -10.37453 -9.66586 -8.95085 -8.04732 -6.18566 1.33243 1.36965 1.41633 1.50490 1.95971 2.39206 2.83272 3.16723 3.19523 3.46725 3.72721 3.77856 3.82290 3.92803 3.98518 4.02866 4.11420 4.16679 4.27335 4.29452 4.33813 4.45143 4.52782 4.55090 4.60110 4.70841 4.74149 4.81716 4.84341 4.87441 4.90214 4.93984 4.98084 4.98970 5.03501 5.06021 5.15517 5.17411 5.25231 5.29749 5.32694 5.41519 5.45953 5.50327 5.57418 5.67513 5.83514 5.94663 6.02658 6.19247 6.37019 6.45704 6.66450 6.97386 7.09882 7.48999 8.93688 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.004731 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.591502 B = 5916.458212 C = 6878.257583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C 0.227 3.773 4 H 0.015 0.985 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.908 5.908 9 Si 0.925 3.075 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.511 5.511 14 C 0.093 3.907 15 C -0.088 4.088 16 H 0.122 0.878 17 C 0.534 3.466 18 O -0.587 6.587 19 N -0.620 5.620 20 C 0.088 3.912 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.093 3.907 24 C -0.112 4.112 25 C 0.098 3.902 26 H 0.134 0.866 27 O -0.392 6.392 28 C 0.051 3.949 29 C -0.165 4.165 30 C 0.077 3.923 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.080 0.920 52 H 0.055 0.945 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 -1.122 14.223 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 C 0.121 3.879 4 H 0.033 0.967 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.169 4.169 8 N -0.548 5.548 9 Si 0.752 3.248 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.233 5.233 14 C -0.035 4.035 15 C -0.109 4.109 16 H 0.140 0.860 17 C 0.323 3.677 18 O -0.468 6.468 19 N -0.353 5.353 20 C -0.034 4.034 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.029 4.029 24 C -0.150 4.150 25 C 0.041 3.959 26 H 0.151 0.849 27 O -0.311 6.311 28 C -0.026 4.026 29 C -0.204 4.204 30 C -0.034 4.034 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.098 0.902 52 H 0.074 0.926 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.999 -0.810 14.360 18.731 hybrid contribution 2.968 -0.160 -0.679 3.048 sum -9.032 -0.970 13.681 16.422 Atomic orbital electron populations 1.21573 0.95457 0.99934 1.01329 1.21371 0.95075 0.97700 0.99607 1.19017 0.90961 0.91192 0.86739 0.96686 1.22082 0.93815 1.39876 1.02194 0.92629 1.25372 1.00484 0.95425 0.95624 1.69990 1.36048 1.41942 1.06799 0.86139 0.83500 0.78173 0.76953 1.20840 1.21047 1.20215 1.60888 1.58214 1.01440 1.02768 1.21598 0.95409 0.98434 0.88096 1.21213 1.03152 0.95549 0.90999 0.86015 1.20529 0.82719 0.78609 0.85830 1.90650 1.25633 1.63671 1.66834 1.48660 1.30201 1.34693 1.21718 1.22374 0.86579 0.96147 0.98284 1.22660 1.02796 0.97665 0.93015 1.22766 0.93788 1.01482 0.97767 1.22410 0.99310 0.97120 0.84100 1.21776 1.01273 0.93287 0.98662 1.23100 0.98181 0.82292 0.92375 0.84882 1.88602 1.34547 1.30639 1.77344 1.23197 0.86712 0.96612 0.96086 1.23555 0.99895 0.94954 1.02028 1.22286 0.93530 0.89446 0.98117 0.90026 0.94764 0.93641 0.91388 0.93286 0.95103 0.93137 0.96701 0.90934 0.89509 0.91348 0.90064 0.87431 0.87814 0.89852 0.92073 0.91962 0.90677 0.93455 0.92145 0.90172 0.92608 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.75 71.98 0.70 -3.57 16 2 C -0.10 -4.24 5.07 30.59 0.16 -4.09 16 3 C 0.23 10.27 1.62 44.17 0.07 10.34 16 4 H 0.02 0.78 7.94 -2.38 -0.02 0.76 16 5 C -0.54 -27.30 5.64 25.60 0.14 -27.16 16 6 H 0.06 2.89 4.17 -2.91 -0.01 2.88 16 7 C 0.03 1.65 5.33 84.66 0.45 2.10 16 8 N -0.91 -49.96 11.75 21.45 0.25 -49.71 16 9 Si 0.92 43.36 29.54 68.60 2.03 45.38 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.51 -18.97 3.63 -851.01 -3.09 -22.06 16 14 C 0.09 3.42 3.91 86.47 0.34 3.76 16 15 C -0.09 -2.64 2.31 -11.51 -0.03 -2.67 16 16 H 0.12 2.99 6.92 -2.39 -0.02 2.97 16 17 C 0.53 17.34 6.87 87.66 0.60 17.94 16 18 O -0.59 -24.10 16.56 -3.01 -0.05 -24.15 16 19 N -0.62 -15.37 3.33 -811.81 -2.70 -18.07 16 20 C 0.09 1.51 6.20 86.73 0.54 2.05 16 21 C -0.12 -1.36 6.95 31.78 0.22 -1.13 16 22 C -0.12 -1.40 7.08 31.99 0.23 -1.18 16 23 C 0.09 1.92 6.89 86.85 0.60 2.52 16 24 C -0.11 -3.53 4.12 30.57 0.13 -3.40 16 25 C 0.10 2.99 4.21 30.99 0.13 3.12 16 26 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 27 O -0.39 -13.00 10.95 -148.98 -1.63 -14.63 16 28 C 0.05 1.68 7.43 72.57 0.54 2.22 16 29 C -0.16 -6.37 3.98 31.66 0.13 -6.25 16 30 C 0.08 2.74 2.70 46.17 0.12 2.86 16 31 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 32 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 35 H 0.05 2.44 6.55 -2.38 -0.02 2.42 16 36 H 0.03 1.31 6.48 -2.39 -0.02 1.29 16 37 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.01 0.66 5.05 -2.39 -0.01 0.65 16 39 H 0.07 2.69 6.26 -2.39 -0.01 2.68 16 40 H 0.09 1.24 7.63 -2.39 -0.02 1.22 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 48 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 49 H 0.05 1.79 6.79 -2.39 -0.02 1.77 16 50 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 51 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 52 H 0.06 2.40 4.82 -2.39 -0.01 2.39 16 53 H 0.07 3.12 7.20 -2.39 -0.02 3.10 16 Total: -1.00 -64.03 386.67 0.76 -63.26 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.89 Total: 22.51 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.07 Total: -2.54 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -5.54 Total: -89.83 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.68 Total: -38.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -64.03 0.76 -63.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.226 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds