Wall clock time and date at job start Tue Mar 31 2020 20:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46652 * 2 1 4 4 H 1.09001 * 109.47034 * 304.43584 * 3 2 1 5 5 C 1.50705 * 109.46832 * 184.44104 * 3 2 1 6 6 H 1.08003 * 120.00073 * 240.00133 * 5 3 2 7 7 C 1.37881 * 119.99784 * 59.99879 * 5 3 2 8 8 N 1.31509 * 120.00213 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47139 * 59.99958 * 9 7 5 11 11 H 1.48501 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47047 * 299.99861 * 9 7 5 13 13 N 1.46896 * 109.47409 * 64.44328 * 3 2 1 14 14 C 1.47937 * 111.00125 * 182.44050 * 13 3 2 15 15 C 1.54931 * 107.07360 * 216.47177 * 14 13 3 16 16 H 1.08996 * 111.11274 * 237.96120 * 15 14 13 17 17 C 1.52918 * 107.16267 * 115.89371 * 15 14 13 18 18 O 1.42691 * 109.91131 * 196.21531 * 17 15 14 19 19 C 1.42655 * 112.74240 * 66.83139 * 18 17 15 20 20 C 1.51684 * 110.41495 * 297.49945 * 19 18 17 21 21 H 1.08994 * 108.23187 * 165.00878 * 20 19 18 22 22 C 1.50709 * 108.36482 * 282.21933 * 20 19 18 23 23 O 1.21285 * 119.99666 * 110.43657 * 22 20 19 24 24 N 1.34777 * 119.99858 * 290.44011 * 22 20 19 25 25 C 1.47020 * 125.64802 * 3.30860 * 24 22 20 26 26 C 1.54312 * 107.27429 * 180.97003 * 25 24 22 27 27 C 1.55162 * 102.86291 * 22.52321 * 26 25 24 28 28 C 1.47426 * 125.64597 * 183.61684 * 24 22 20 29 29 C 1.49638 * 115.05796 * 43.66443 * 20 19 18 30 30 H 1.09005 * 107.46081 * 206.53191 * 29 20 19 31 31 C 1.48845 * 111.00220 * 64.77181 * 13 3 2 32 32 H 1.09005 * 109.46603 * 184.70939 * 1 2 3 33 33 H 1.09003 * 109.47168 * 304.70167 * 1 2 3 34 34 H 1.08999 * 109.47407 * 64.70504 * 1 2 3 35 35 H 1.09001 * 109.46966 * 240.00297 * 2 1 3 36 36 H 1.08997 * 109.47381 * 119.99607 * 2 1 3 37 37 H 0.97003 * 119.99909 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.91397 * 97.11359 * 14 13 3 39 39 H 1.08998 * 109.91329 * 335.82728 * 14 13 3 40 40 H 1.08997 * 109.39862 * 316.34800 * 17 15 14 41 41 H 1.08995 * 109.39788 * 76.07749 * 17 15 14 42 42 H 1.08994 * 109.31778 * 177.20963 * 19 18 17 43 43 H 1.08998 * 109.30887 * 57.78220 * 19 18 17 44 44 H 1.09000 * 109.88117 * 300.51056 * 25 24 22 45 45 H 1.08998 * 109.88354 * 61.68015 * 25 24 22 46 46 H 1.08997 * 110.92586 * 264.11538 * 26 25 24 47 47 H 1.09000 * 110.59475 * 140.78535 * 26 25 24 48 48 H 1.08998 * 111.00677 * 206.22762 * 27 26 25 49 49 H 1.09001 * 111.00194 * 82.38240 * 27 26 25 50 50 H 1.08995 * 110.36480 * 274.67549 * 28 24 22 51 51 H 1.09004 * 110.36539 * 36.99687 * 28 24 22 52 52 H 1.08997 * 110.83250 * 277.51482 * 31 13 3 53 53 H 1.09003 * 110.82550 * 40.88469 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6131 1.9788 -0.8476 5 6 3.5429 1.4440 -0.1100 6 1 4.1411 1.8912 0.6702 7 6 4.1544 0.8745 -1.2068 8 7 3.4261 0.3305 -2.1570 9 14 6.0175 0.8757 -1.3428 10 1 6.5985 0.1447 -0.1881 11 1 6.4220 0.2083 -2.6062 12 1 6.5129 2.2757 -1.3425 13 7 1.6398 2.1034 1.2494 14 6 2.0660 3.5200 1.2600 15 6 2.4829 3.8588 2.7132 16 1 1.8981 4.6907 3.1056 17 6 3.9767 4.1848 2.6898 18 8 4.5053 4.1375 4.0143 19 6 4.4952 2.8218 4.5655 20 6 3.0728 2.3083 4.6830 21 1 3.1114 1.2313 4.8463 22 6 2.4356 2.9469 5.8902 23 8 1.5530 3.7665 5.7478 24 7 2.8466 2.6072 7.1280 25 6 3.9472 1.6845 7.4423 26 6 4.0361 1.5841 8.9796 27 6 2.6146 2.0066 9.4361 28 6 2.2628 3.0945 8.3910 29 6 2.2029 2.5739 3.4947 30 1 1.1717 2.6120 3.8462 31 6 2.2973 1.4674 2.4236 32 1 -0.3633 -1.0243 0.0844 33 1 -0.3634 0.5851 0.8449 34 1 -0.3634 0.4391 -0.9291 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5137 0.8900 37 1 3.8563 -0.0698 -2.9288 38 1 1.2383 4.1591 0.9527 39 1 2.9138 3.6576 0.5889 40 1 4.4963 3.4571 2.0665 41 1 4.1230 5.1830 2.2770 42 1 4.9541 2.8414 5.5539 43 1 5.0666 2.1558 3.9189 44 1 3.7410 0.7027 7.0162 45 1 4.8835 2.0749 7.0436 46 1 4.7868 2.2701 9.3718 47 1 4.2508 0.5601 9.2852 48 1 2.6355 2.4241 10.4428 49 1 1.9200 1.1686 9.3768 50 1 2.7087 4.0486 8.6718 51 1 1.1815 3.1935 8.2958 52 1 1.7529 0.5768 2.7374 53 1 3.3370 1.2261 2.2020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167897.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:15 Heat of formation + Delta-G solvation = -90.084345 kcal Electronic energy + Delta-G solvation = -31912.720302 eV Core-core repulsion = 27976.307745 eV Total energy + Delta-G solvation = -3936.412557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15996 -40.45369 -38.69765 -38.27054 -35.93944 -34.25839 -33.63148 -32.33144 -31.55371 -30.05875 -29.02736 -28.31518 -26.13817 -25.48176 -24.81092 -23.89848 -22.44774 -22.05111 -21.20891 -20.61351 -19.46546 -18.56633 -18.20765 -17.68735 -17.44868 -17.07191 -16.87716 -16.23647 -16.08371 -15.85772 -15.34052 -15.18419 -14.78647 -14.74761 -14.51445 -14.26896 -14.05982 -14.02276 -13.80330 -13.49894 -13.25036 -13.18469 -13.08697 -13.04881 -12.74642 -12.59599 -12.42849 -12.35055 -12.10847 -12.03281 -11.90155 -11.85864 -11.79525 -11.61019 -11.51358 -11.33571 -11.29020 -10.95635 -10.76993 -10.42701 -10.40023 -9.65572 -8.97984 -8.00823 -6.21846 1.40333 1.42198 1.48040 1.57644 1.93636 2.42126 2.85884 3.18783 3.32544 3.38976 3.52489 3.69291 3.76093 3.79185 3.88778 4.03894 4.07919 4.16107 4.24593 4.33094 4.42140 4.48457 4.51216 4.53429 4.57961 4.63780 4.67114 4.74077 4.79909 4.82929 4.88078 4.91522 4.92666 4.97964 5.01861 5.02677 5.14254 5.16901 5.23588 5.25958 5.30483 5.39782 5.43528 5.44543 5.49048 5.63909 5.79110 6.03676 6.08452 6.19489 6.38974 6.45770 6.52250 6.97817 7.12224 7.48055 8.95479 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003565 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.567763 B = 7853.332775 C = 8352.028984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.213 3.787 4 H -0.001 1.001 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.519 5.519 14 C 0.045 3.955 15 C -0.106 4.106 16 H 0.076 0.924 17 C 0.068 3.932 18 O -0.386 6.386 19 C 0.064 3.936 20 C -0.116 4.116 21 H 0.123 0.877 22 C 0.533 3.467 23 O -0.577 6.577 24 N -0.623 5.623 25 C 0.081 3.919 26 C -0.123 4.123 27 C -0.124 4.124 28 C 0.096 3.904 29 C -0.063 4.063 30 H 0.063 0.937 31 C 0.056 3.944 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.070 0.930 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 0.409 22.577 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C 0.105 3.895 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.242 5.242 14 C -0.084 4.084 15 C -0.126 4.126 16 H 0.094 0.906 17 C -0.008 4.008 18 O -0.304 6.304 19 C -0.013 4.013 20 C -0.138 4.138 21 H 0.141 0.859 22 C 0.323 3.677 23 O -0.456 6.456 24 N -0.357 5.357 25 C -0.041 4.041 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.027 4.027 29 C -0.083 4.083 30 H 0.082 0.918 31 C -0.072 4.072 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.089 0.911 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.557 0.878 22.364 22.527 hybrid contribution 1.303 -0.068 -1.148 1.738 sum 3.860 0.810 21.216 21.579 Atomic orbital electron populations 1.21603 0.96771 0.99912 1.00375 1.21398 0.94094 0.98135 1.00476 1.19165 0.92276 0.91486 0.86566 0.98272 1.21897 0.93422 1.37453 1.05548 0.92255 1.25585 1.01544 0.94995 0.95518 1.70001 1.36386 1.38831 1.09900 0.85876 0.81714 0.78253 0.77443 1.19315 1.21421 1.20043 1.65050 1.53806 1.01602 1.03786 1.22943 0.98997 0.91219 0.95203 1.22130 0.97210 0.98049 0.95178 0.90552 1.22705 0.92005 1.02715 0.83415 1.87934 1.82942 1.29009 1.30563 1.22479 0.92895 0.84805 1.01112 1.20820 0.97382 1.03158 0.92447 0.85920 1.20494 0.81856 0.81409 0.83976 1.90661 1.33501 1.35340 1.86130 1.48611 1.35473 1.46683 1.04893 1.22531 0.89346 0.93639 0.98534 1.22667 0.97225 1.04301 0.91899 1.22777 0.97252 0.97644 0.98497 1.22373 0.98426 0.98533 0.83322 1.20508 0.99567 0.94841 0.93345 0.91834 1.23042 0.98315 0.96051 0.89806 0.93424 0.92786 0.95040 0.91818 0.94839 0.93046 0.92054 0.93431 0.93256 0.88061 0.86142 0.91089 0.89938 0.90105 0.89389 0.87769 0.87785 0.90448 0.91541 0.92427 0.91131 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.85 71.98 0.71 -4.56 16 2 C -0.10 -4.83 5.17 30.60 0.16 -4.67 16 3 C 0.21 10.46 1.76 44.17 0.08 10.53 16 4 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 5 C -0.54 -27.89 6.36 25.60 0.16 -27.73 16 6 H 0.06 2.97 5.06 -2.91 -0.01 2.95 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -51.00 11.30 21.45 0.24 -50.76 16 9 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 13 N -0.52 -22.14 4.62 -860.66 -3.98 -26.12 16 14 C 0.04 1.80 5.92 86.76 0.51 2.31 16 15 C -0.11 -3.76 3.51 -10.17 -0.04 -3.80 16 16 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 17 C 0.07 2.24 5.80 71.95 0.42 2.66 16 18 O -0.39 -12.11 10.80 -148.98 -1.61 -13.72 16 19 C 0.06 1.60 6.00 71.55 0.43 2.03 16 20 C -0.12 -3.15 1.84 -13.05 -0.02 -3.18 16 21 H 0.12 2.73 7.54 -2.39 -0.02 2.72 16 22 C 0.53 15.57 6.84 87.66 0.60 16.17 16 23 O -0.58 -21.98 15.80 -3.05 -0.05 -22.03 16 24 N -0.62 -13.16 3.31 -811.82 -2.69 -15.85 16 25 C 0.08 1.02 5.96 86.73 0.52 1.53 16 26 C -0.12 -0.90 6.95 31.78 0.22 -0.68 16 27 C -0.12 -1.18 7.08 31.99 0.23 -0.95 16 28 C 0.10 1.71 6.89 86.85 0.60 2.31 16 29 C -0.06 -2.14 1.80 -11.44 -0.02 -2.16 16 30 H 0.06 2.42 7.01 -2.38 -0.02 2.40 16 31 C 0.06 2.10 4.70 86.37 0.41 2.50 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 33 H 0.05 2.15 7.61 -2.39 -0.02 2.13 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 3.39 5.96 -2.39 -0.01 3.37 16 36 H 0.03 1.51 6.88 -2.39 -0.02 1.50 16 37 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 2.06 5.76 -2.39 -0.01 2.04 16 40 H 0.05 1.75 6.68 -2.39 -0.02 1.74 16 41 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.12 2.33 5.12 -2.39 -0.01 2.32 16 43 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 44 H 0.08 0.89 7.91 -2.39 -0.02 0.88 16 45 H 0.08 0.89 5.90 -2.39 -0.01 0.88 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.06 1.24 8.07 -2.38 -0.02 1.22 16 52 H 0.07 2.57 7.63 -2.39 -0.02 2.55 16 53 H 0.05 2.00 5.93 -2.39 -0.01 1.98 16 Total: -1.00 -66.99 387.43 0.25 -66.74 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.89 Total: 23.98 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.41 Total: -5.99 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -6.42 Total: -92.72 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.66 Total: -35.75 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.99 0.25 -66.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167897.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.347 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds