Wall clock time and date at job start Tue Mar 31 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47490 * 2 1 4 4 H 1.08998 * 109.47250 * 54.99625 * 3 2 1 5 5 C 1.50703 * 109.47250 * 174.99987 * 3 2 1 6 6 H 1.07997 * 120.00160 * 119.99872 * 5 3 2 7 7 C 1.37873 * 119.99810 * 300.00015 * 5 3 2 8 8 N 1.31516 * 120.00170 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46953 * 120.00153 * 9 7 5 12 12 H 1.48505 * 109.46956 * 239.99702 * 9 7 5 13 13 N 1.46907 * 109.46996 * 294.99999 * 3 2 1 14 14 C 1.49176 * 110.99826 * 294.75368 * 13 3 2 15 15 C 1.53962 * 102.86367 * 198.45492 * 14 13 3 16 16 H 1.08994 * 106.06487 * 276.97539 * 15 14 13 17 17 C 1.49686 * 112.98191 * 160.55092 * 15 14 13 18 18 O 1.42350 * 113.45733 * 262.50677 * 17 15 14 19 19 C 1.43419 * 111.86170 * 304.78097 * 18 17 15 20 20 C 1.52370 * 107.76014 * 70.37636 * 19 18 17 21 21 H 1.09000 * 108.91375 * 63.99094 * 20 19 18 22 22 C 1.50702 * 108.91231 * 182.62045 * 20 19 18 23 23 O 1.21283 * 119.99732 * 84.27444 * 22 20 19 24 24 N 1.34769 * 120.00337 * 264.27642 * 22 20 19 25 25 C 1.47026 * 125.64535 * 4.74831 * 24 22 20 26 26 C 1.54311 * 107.27488 * 180.96997 * 25 24 22 27 27 C 1.55159 * 102.86525 * 22.52422 * 26 25 24 28 28 C 1.47422 * 125.65323 * 185.05628 * 24 22 20 29 29 C 1.49928 * 112.25101 * 303.66861 * 20 19 18 30 30 H 1.08998 * 108.86926 * 265.90919 * 29 20 19 31 31 C 1.48675 * 110.99740 * 179.97438 * 13 3 2 32 32 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47359 * 300.00506 * 1 2 3 34 34 H 1.09003 * 109.46711 * 59.99727 * 1 2 3 35 35 H 1.09005 * 109.47036 * 239.99674 * 2 1 3 36 36 H 1.08998 * 109.47082 * 119.99979 * 2 1 3 37 37 H 0.97002 * 120.00173 * 180.02562 * 8 7 5 38 38 H 1.09006 * 110.73774 * 316.79823 * 14 13 3 39 39 H 1.09003 * 110.73718 * 80.11004 * 14 13 3 40 40 H 1.09005 * 108.68424 * 23.53049 * 17 15 14 41 41 H 1.08997 * 108.68680 * 141.47944 * 17 15 14 42 42 H 1.09000 * 109.80185 * 189.93796 * 19 18 17 43 43 H 1.08999 * 109.80451 * 310.81092 * 19 18 17 44 44 H 1.09002 * 109.88336 * 300.51272 * 25 24 22 45 45 H 1.08996 * 109.88289 * 61.68116 * 25 24 22 46 46 H 1.09004 * 110.92654 * 264.11284 * 26 25 24 47 47 H 1.08999 * 110.59361 * 140.78420 * 26 25 24 48 48 H 1.09001 * 111.00536 * 206.23141 * 27 26 25 49 49 H 1.09003 * 111.00328 * 82.38144 * 27 26 25 50 50 H 1.08997 * 110.36847 * 274.67645 * 28 24 22 51 51 H 1.09005 * 110.36558 * 36.99702 * 28 24 22 52 52 H 1.08996 * 110.36374 * 276.75983 * 31 13 3 53 53 H 1.08996 * 110.36987 * 38.97615 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1728 9 14 6.0050 0.8811 1.3818 10 1 6.5988 1.5460 0.1943 11 1 6.3990 1.6165 2.6103 12 1 6.4970 -0.5177 1.4630 13 7 1.6514 2.0993 -1.2553 14 6 2.3299 1.4652 -2.4227 15 6 2.1968 2.5368 -3.5202 16 1 1.2049 2.4045 -3.9521 17 6 3.1771 2.3549 -4.6366 18 8 4.3368 3.1708 -4.5110 19 6 4.0015 4.5593 -4.3827 20 6 3.3690 4.7600 -3.0111 21 1 4.1099 4.5346 -2.2440 22 6 2.9472 6.2002 -2.8737 23 8 1.8762 6.5629 -3.3125 24 7 3.7599 7.0852 -2.2634 25 6 5.1188 6.8061 -1.7762 26 6 5.6498 8.1035 -1.1314 27 6 4.3487 8.8719 -0.7791 28 6 3.4315 8.4917 -1.9680 29 6 2.1773 3.8749 -2.8005 30 1 1.2768 4.4256 -3.0724 31 6 2.1306 3.5062 -1.2910 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.8292 -0.0613 2.9498 38 1 3.3788 1.2693 -2.1999 39 1 1.8186 0.5479 -2.7149 40 1 3.4865 1.3100 -4.6629 41 1 2.6825 2.5937 -5.5781 42 1 4.9032 5.1661 -4.4659 43 1 3.2926 4.8415 -5.1611 44 1 5.0902 6.0067 -1.0358 45 1 5.7598 6.5195 -2.6098 46 1 6.2534 8.6715 -1.8394 47 1 6.2205 7.8781 -0.2305 48 1 4.5255 9.9471 -0.7503 49 1 3.9310 8.5209 0.1646 50 1 3.6484 9.1212 -2.8310 51 1 2.3834 8.5848 -1.6834 52 1 1.4346 4.1575 -0.7624 53 1 3.1255 3.5794 -0.8519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:19 Heat of formation + Delta-G solvation = -91.066865 kcal Electronic energy + Delta-G solvation = -32001.180270 eV Core-core repulsion = 28064.725107 eV Total energy + Delta-G solvation = -3936.455163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10470 -40.50315 -38.79376 -38.36505 -36.01654 -34.19654 -33.54244 -32.33272 -32.03061 -30.01502 -29.02593 -28.31540 -26.24518 -25.46733 -24.73453 -23.78900 -22.68911 -22.09379 -21.03791 -20.64625 -19.64854 -18.68348 -18.28257 -17.78740 -17.43977 -17.13143 -16.68034 -16.39655 -16.04615 -15.70109 -15.49899 -15.17954 -14.81121 -14.78580 -14.46562 -14.30793 -14.15743 -14.01324 -13.88572 -13.57460 -13.37744 -13.26390 -13.19667 -12.86036 -12.78466 -12.61538 -12.41445 -12.27312 -12.21613 -12.14995 -12.03870 -11.89828 -11.70792 -11.60141 -11.56129 -11.34523 -11.04912 -10.99818 -10.94677 -10.55061 -10.41303 -9.73297 -9.08098 -8.04092 -6.24566 1.36055 1.39910 1.42700 1.49551 1.88499 2.40502 2.91149 3.15783 3.30375 3.34441 3.50806 3.63899 3.64936 3.78063 3.86398 4.03410 4.10902 4.14091 4.25619 4.31144 4.40043 4.45195 4.52556 4.56520 4.57655 4.61820 4.65359 4.71901 4.80243 4.82318 4.85674 4.86296 4.90781 4.92673 4.95728 4.98371 5.09310 5.14504 5.17534 5.23888 5.26302 5.34678 5.37227 5.39840 5.46405 5.61045 5.75776 6.01838 6.07562 6.15713 6.31095 6.37042 6.45835 6.94709 7.00396 7.45219 8.93162 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004604 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.314707 B = 6080.070970 C = 7197.210553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.209 3.791 4 H -0.003 1.003 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.509 5.509 14 C 0.048 3.952 15 C -0.112 4.112 16 H 0.082 0.918 17 C 0.071 3.929 18 O -0.378 6.378 19 C 0.079 3.921 20 C -0.122 4.122 21 H 0.090 0.910 22 C 0.538 3.462 23 O -0.574 6.574 24 N -0.619 5.619 25 C 0.086 3.914 26 C -0.123 4.123 27 C -0.127 4.127 28 C 0.097 3.903 29 C -0.062 4.062 30 H 0.078 0.922 31 C 0.045 3.955 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.260 0.740 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.059 0.941 52 H 0.046 0.954 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 13.577 -11.238 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.101 3.899 4 H 0.014 0.986 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.232 5.232 14 C -0.080 4.080 15 C -0.131 4.131 16 H 0.100 0.900 17 C -0.006 4.006 18 O -0.296 6.296 19 C 0.001 3.999 20 C -0.144 4.144 21 H 0.109 0.891 22 C 0.327 3.673 23 O -0.454 6.454 24 N -0.353 5.353 25 C -0.037 4.037 26 C -0.160 4.160 27 C -0.165 4.165 28 C -0.025 4.025 29 C -0.082 4.082 30 H 0.096 0.904 31 C -0.084 4.084 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.129 0.871 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.077 0.923 52 H 0.064 0.936 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.923 13.499 -11.336 18.059 hybrid contribution 1.180 -0.199 1.115 1.636 sum 5.104 13.300 -10.221 17.533 Atomic orbital electron populations 1.21583 0.96561 0.99847 1.00465 1.21392 0.94256 0.97945 1.00531 1.19158 0.92420 0.91650 0.86695 0.98556 1.21902 0.93494 1.37508 1.05246 0.92585 1.25611 1.01756 0.94946 0.95530 1.70020 1.36242 1.39071 1.09861 0.85721 0.81504 0.77772 0.78009 1.19053 1.20827 1.20799 1.65990 1.51729 1.01516 1.03995 1.23120 0.97961 0.96722 0.90173 1.21163 1.01578 0.93957 0.96429 0.89967 1.21832 0.86179 0.96466 0.96126 1.88177 1.30558 1.17075 1.93816 1.22414 1.00997 0.83784 0.92666 1.21215 0.99526 0.91242 1.02446 0.89137 1.20266 0.83112 0.87328 0.76633 1.90647 1.24250 1.80309 1.50235 1.48647 1.16769 1.12004 1.57831 1.22358 0.81871 0.99918 0.99503 1.22657 0.97415 0.93933 1.02017 1.22803 0.94668 1.02418 0.96600 1.22418 0.99988 0.81132 0.98938 1.20695 0.97423 0.94959 0.95073 0.90370 1.23365 0.98365 0.91604 0.95045 0.93336 0.95171 0.92648 0.94768 0.91853 0.93018 0.94002 0.90626 0.87880 0.90981 0.86616 0.91480 0.92247 0.89643 0.88334 0.88804 0.87076 0.91438 0.90101 0.92266 0.93565 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.80 71.98 0.71 -4.53 16 2 C -0.10 -4.94 5.19 30.59 0.16 -4.78 16 3 C 0.21 10.52 1.83 44.17 0.08 10.60 16 4 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 5 C -0.54 -28.78 6.54 25.60 0.17 -28.61 16 6 H 0.06 2.98 5.62 -2.91 -0.02 2.96 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.61 16 9 Si 0.94 42.66 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.51 -22.05 4.87 -857.26 -4.18 -26.23 16 14 C 0.05 1.84 4.67 86.19 0.40 2.24 16 15 C -0.11 -3.49 2.77 -11.88 -0.03 -3.52 16 16 H 0.08 2.40 8.09 -2.39 -0.02 2.38 16 17 C 0.07 1.84 6.30 70.92 0.45 2.29 16 18 O -0.38 -10.67 10.88 -148.98 -1.62 -12.29 16 19 C 0.08 1.96 6.07 71.77 0.44 2.39 16 20 C -0.12 -3.63 1.93 -12.74 -0.02 -3.65 16 21 H 0.09 2.87 5.69 -2.39 -0.01 2.85 16 22 C 0.54 16.30 6.74 87.66 0.59 16.89 16 23 O -0.57 -21.07 16.06 -3.04 -0.05 -21.12 16 24 N -0.62 -15.06 3.33 -811.83 -2.70 -17.76 16 25 C 0.09 1.62 6.16 86.72 0.53 2.15 16 26 C -0.12 -1.53 6.95 31.78 0.22 -1.31 16 27 C -0.13 -1.75 7.08 31.99 0.23 -1.52 16 28 C 0.10 1.92 6.89 86.85 0.60 2.52 16 29 C -0.06 -2.11 2.77 -11.28 -0.03 -2.14 16 30 H 0.08 2.84 6.75 -2.39 -0.02 2.83 16 31 C 0.04 1.85 5.76 86.81 0.50 2.35 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 2.17 7.75 -2.39 -0.02 2.16 16 35 H 0.03 1.58 6.81 -2.38 -0.02 1.57 16 36 H 0.06 3.43 5.95 -2.39 -0.01 3.42 16 37 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 38 H 0.04 1.80 5.90 -2.38 -0.01 1.78 16 39 H 0.08 2.74 7.50 -2.39 -0.02 2.72 16 40 H 0.10 2.53 7.81 -2.38 -0.02 2.51 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 1.59 8.05 -2.39 -0.02 1.58 16 44 H 0.06 1.33 7.62 -2.39 -0.02 1.32 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.38 8.09 -2.38 -0.02 1.36 16 52 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.04 1.83 5.23 -2.39 -0.01 1.81 16 Total: -1.00 -66.45 392.89 0.03 -66.42 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.88 Total: 24.93 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.43 Total: -7.02 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -6.64 Total: -95.60 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.67 Total: -33.41 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.45 0.03 -66.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.647 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds