Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 H 1.09004 * 109.46921 * 303.47683 * 3 2 1 5 5 C 1.50704 * 109.46865 * 183.47784 * 3 2 1 6 6 H 1.07993 * 120.00026 * 301.48317 * 5 3 2 7 7 C 1.37871 * 119.99830 * 121.48551 * 5 3 2 8 8 N 1.31514 * 119.99928 * 173.07371 * 7 5 3 9 9 Si 1.86809 * 120.00200 * 353.07902 * 7 5 3 10 10 H 1.48492 * 109.47004 * 84.89429 * 9 7 5 11 11 H 1.48501 * 109.46993 * 204.89962 * 9 7 5 12 12 H 1.48504 * 109.46792 * 324.89387 * 9 7 5 13 13 N 1.46898 * 109.47276 * 63.47829 * 3 2 1 14 14 C 1.46852 * 111.00298 * 66.04488 * 13 3 2 15 15 C 1.53034 * 109.49734 * 185.89306 * 14 13 3 16 16 H 1.08992 * 109.50310 * 60.76513 * 15 14 13 17 17 N 1.46498 * 109.49996 * 180.83761 * 15 14 13 18 18 C 1.46759 * 124.35288 * 239.99779 * 17 15 14 19 19 C 1.54471 * 105.48007 * 197.03626 * 18 17 15 20 20 C 1.54632 * 101.76711 * 334.58849 * 19 18 17 21 21 C 1.34421 * 124.35114 * 60.02524 * 17 15 14 22 22 O 1.21286 * 124.94358 * 359.53200 * 21 17 15 23 23 C 1.53101 * 109.29265 * 300.78192 * 15 14 13 24 24 H 1.09003 * 109.52117 * 177.52298 * 23 15 14 25 25 O 1.42873 * 109.40789 * 297.79235 * 23 15 14 26 26 C 1.42890 * 114.15813 * 180.61839 * 25 23 15 27 27 C 1.53092 * 109.40323 * 298.84323 * 26 25 23 28 28 C 1.53180 * 109.13042 * 57.68414 * 27 26 25 29 29 C 1.53128 * 109.20303 * 57.58296 * 23 15 14 30 30 H 1.08991 * 109.79399 * 62.72287 * 29 23 15 31 31 C 1.46836 * 110.99764 * 190.24976 * 13 3 2 32 32 H 1.09000 * 109.47204 * 299.99997 * 1 2 3 33 33 H 1.08997 * 109.47253 * 60.00254 * 1 2 3 34 34 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47415 * 239.99617 * 2 1 3 36 36 H 1.09006 * 109.47176 * 119.99601 * 2 1 3 37 37 H 0.97004 * 119.99904 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.46352 * 65.88415 * 14 13 3 39 39 H 1.09001 * 109.46663 * 305.90448 * 14 13 3 40 40 H 1.09005 * 110.24544 * 316.04309 * 18 17 15 41 41 H 1.09005 * 110.24693 * 78.03838 * 18 17 15 42 42 H 1.09000 * 110.97884 * 216.46588 * 19 18 17 43 43 H 1.09005 * 110.97007 * 92.70497 * 19 18 17 44 44 H 1.09001 * 110.48496 * 266.11627 * 20 19 18 45 45 H 1.08993 * 110.49005 * 143.47100 * 20 19 18 46 46 H 1.09000 * 109.47431 * 178.86840 * 26 25 23 47 47 H 1.08998 * 109.49236 * 58.83562 * 26 25 23 48 48 H 1.08994 * 109.53381 * 297.79133 * 27 26 25 49 49 H 1.09000 * 109.52833 * 177.57790 * 27 26 25 50 50 H 1.08994 * 109.54344 * 183.09872 * 28 27 26 51 51 H 1.09001 * 109.53841 * 62.84975 * 28 27 26 52 52 H 1.09004 * 109.45603 * 294.20722 * 31 13 3 53 53 H 1.09001 * 109.46006 * 54.15461 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6265 1.9740 -0.8572 5 6 3.5445 1.4434 -0.0862 6 1 4.1289 0.9393 0.6692 7 6 4.1748 2.0879 -1.1294 8 7 5.4846 2.2066 -1.1337 9 14 3.1685 2.7927 -2.5366 10 1 2.6900 4.1502 -2.1715 11 1 4.0126 2.8764 -3.7554 12 1 2.0028 1.9115 -2.8013 13 7 1.6201 2.1104 1.2392 14 6 2.2735 1.5088 2.4087 15 6 1.7041 2.1284 3.6869 16 1 0.6337 1.9303 3.7417 17 7 2.3701 1.5427 4.8530 18 6 1.6795 0.8053 5.9175 19 6 2.6689 0.7698 7.1032 20 6 4.0299 0.9102 6.3825 21 6 3.6922 1.6122 5.0857 22 8 4.4974 2.1577 4.3610 23 6 1.9445 3.6403 3.6668 24 1 1.5016 4.0914 4.5548 25 8 3.3498 3.8973 3.6461 26 6 3.6904 5.2850 3.6402 27 6 3.1168 5.9442 2.3832 28 6 1.5993 5.7369 2.3557 29 6 1.2982 4.2364 2.4132 30 1 0.2198 4.0818 2.4448 31 6 1.8771 3.5545 1.1718 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8901 37 1 5.9281 2.6597 -1.8679 38 1 3.3464 1.6954 2.3613 39 1 2.0917 0.4341 2.4137 40 1 0.7653 1.3250 6.2044 41 1 1.4504 -0.2079 5.5870 42 1 2.6057 -0.1790 7.6359 43 1 2.4975 1.6073 7.7795 44 1 4.4595 -0.0717 6.1842 45 1 4.7154 1.5147 6.9763 46 1 4.7751 5.3929 3.6446 47 1 3.2737 5.7655 4.5253 48 1 3.5625 5.4905 1.4980 49 1 3.3385 7.0113 2.3979 50 1 1.1907 6.1558 1.4361 51 1 1.1480 6.2324 3.2153 52 1 2.9520 3.7303 1.1290 53 1 1.4064 3.9658 0.2788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168603.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -91.219870 kcal Electronic energy + Delta-G solvation = -33379.674569 eV Core-core repulsion = 29443.212771 eV Total energy + Delta-G solvation = -3936.461797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84789 -40.41833 -38.63643 -37.11906 -35.46790 -35.03359 -34.15710 -32.85436 -31.54267 -29.73025 -28.84284 -28.24629 -26.36227 -25.36191 -24.35634 -23.88975 -22.93990 -22.55041 -20.65829 -19.96580 -19.65502 -18.93790 -17.64879 -17.42321 -17.15527 -16.89697 -16.55627 -16.40423 -16.00137 -15.57835 -15.35180 -14.92033 -14.84600 -14.54131 -14.48460 -14.26474 -14.17019 -13.94510 -13.77885 -13.68731 -13.52267 -13.35424 -13.23904 -13.07376 -12.89371 -12.74727 -12.42718 -12.20517 -12.12211 -11.95331 -11.83492 -11.79693 -11.69844 -11.55371 -11.50258 -11.33580 -11.04537 -10.95787 -10.70472 -10.33302 -10.14374 -9.39428 -8.85079 -8.31690 -6.35796 1.23231 1.25976 1.36276 1.93509 2.17078 2.26840 2.99140 3.04214 3.40178 3.60899 3.76126 3.79893 3.91011 3.94383 4.02404 4.12630 4.14360 4.22269 4.24833 4.36759 4.41521 4.45958 4.53589 4.56082 4.64178 4.68188 4.75565 4.77989 4.78991 4.80777 4.86526 4.90053 4.93095 4.97521 5.00589 5.11935 5.15540 5.23218 5.25375 5.28427 5.31377 5.36415 5.39328 5.46818 5.49279 5.65211 5.67615 5.87306 6.17690 6.41763 6.48403 6.55012 6.60621 6.72344 7.31388 7.57505 8.86333 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.005539 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.911889 B = 5053.608574 C = 5769.023973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C 0.176 3.824 4 H 0.042 0.958 5 C -0.522 4.522 6 H 0.015 0.985 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.242 1.242 13 N -0.510 5.510 14 C 0.068 3.932 15 C 0.175 3.825 16 H 0.129 0.871 17 N -0.620 5.620 18 C 0.097 3.903 19 C -0.112 4.112 20 C -0.153 4.153 21 C 0.486 3.514 22 O -0.542 6.542 23 C 0.080 3.920 24 H 0.072 0.928 25 O -0.356 6.356 26 C 0.058 3.942 27 C -0.156 4.156 28 C -0.105 4.105 29 C -0.106 4.106 30 H 0.107 0.893 31 C 0.073 3.927 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.261 0.739 38 H 0.014 0.986 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.088 0.912 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.007 0.993 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 2.010 17.478 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.068 3.932 4 H 0.060 0.940 5 C -0.561 4.561 6 H 0.034 0.966 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.165 1.165 13 N -0.234 5.234 14 C -0.062 4.062 15 C 0.071 3.929 16 H 0.146 0.854 17 N -0.355 5.355 18 C -0.024 4.024 19 C -0.150 4.150 20 C -0.193 4.193 21 C 0.274 3.726 22 O -0.418 6.418 23 C 0.021 3.979 24 H 0.090 0.910 25 O -0.274 6.274 26 C -0.019 4.019 27 C -0.194 4.194 28 C -0.142 4.142 29 C -0.125 4.125 30 H 0.125 0.875 31 C -0.056 4.056 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.050 0.950 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.111 0.889 52 H 0.025 0.975 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.307 2.147 16.993 22.971 hybrid contribution 1.869 0.567 -1.530 2.481 sum -13.439 2.714 15.462 20.665 Atomic orbital electron populations 1.21613 0.93929 1.01066 1.02039 1.21510 0.96711 0.96229 0.99719 1.19705 0.90952 0.93094 0.89417 0.94022 1.21662 0.92861 1.32922 1.08661 0.96644 1.25988 0.95606 0.95856 1.00786 1.70141 1.10607 1.44934 1.33213 0.85923 0.79462 0.79837 0.78808 1.19116 1.21479 1.16545 1.62594 1.55608 1.02315 1.02854 1.21918 0.96949 0.97146 0.90139 1.20980 0.97608 0.90358 0.83922 0.85366 1.48440 1.08011 1.55674 1.23391 1.22361 0.96866 0.96957 0.86247 1.22580 0.90687 1.05474 0.96223 1.22354 1.00953 1.02090 0.93894 1.21719 0.82829 0.79651 0.88442 1.90837 1.52823 1.44522 1.53588 1.22588 0.83409 0.95238 0.96668 0.90995 1.88562 1.21626 1.22681 1.94550 1.22494 0.99359 0.83332 0.96702 1.22180 0.97615 1.01305 0.98262 1.21538 0.94619 0.94600 1.03480 1.21754 1.01471 0.95358 0.93953 0.87456 1.21809 0.97653 0.89058 0.97083 0.91361 0.93688 0.92344 0.94075 0.94011 0.92981 0.96796 0.92946 0.88139 0.90554 0.86606 0.88950 0.88023 0.88332 0.91758 0.91801 0.94967 0.89341 0.90935 0.88909 0.97506 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.79 71.98 0.70 -3.41 16 2 C -0.10 -4.32 5.29 30.59 0.16 -4.16 16 3 C 0.18 8.45 1.70 44.17 0.08 8.53 16 4 H 0.04 2.03 4.57 -2.38 -0.01 2.01 16 5 C -0.52 -31.55 7.09 25.60 0.18 -31.36 16 6 H 0.02 1.08 7.09 -2.91 -0.02 1.06 16 7 C 0.02 0.94 5.47 84.65 0.46 1.41 16 8 N -0.95 -63.80 13.96 21.44 0.30 -63.50 16 9 Si 0.94 46.59 26.98 68.60 1.85 48.44 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.24 -11.02 6.75 99.48 0.67 -10.35 16 13 N -0.51 -21.51 3.99 -875.56 -3.49 -25.00 16 14 C 0.07 2.89 3.86 86.32 0.33 3.23 16 15 C 0.17 5.51 2.87 45.04 0.13 5.64 16 16 H 0.13 3.16 8.07 -2.39 -0.02 3.14 16 17 N -0.62 -17.48 2.83 -793.80 -2.25 -19.73 16 18 C 0.10 1.55 7.30 86.83 0.63 2.18 16 19 C -0.11 -1.39 7.18 31.65 0.23 -1.17 16 20 C -0.15 -3.36 6.86 30.59 0.21 -3.15 16 21 C 0.49 16.83 7.21 87.90 0.63 17.47 16 22 O -0.54 -26.12 13.17 20.60 0.27 -25.85 16 23 C 0.08 2.54 2.51 30.67 0.08 2.61 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 O -0.36 -14.48 5.30 -125.33 -0.66 -15.14 16 26 C 0.06 2.00 6.84 72.01 0.49 2.49 16 27 C -0.16 -5.01 5.77 30.69 0.18 -4.83 16 28 C -0.10 -2.78 5.52 30.70 0.17 -2.61 16 29 C -0.11 -3.26 2.67 -10.70 -0.03 -3.28 16 30 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 31 C 0.07 3.05 4.08 86.32 0.35 3.40 16 32 H 0.07 2.05 7.71 -2.39 -0.02 2.03 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.78 6.29 -2.38 -0.01 1.77 16 37 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 38 H 0.01 0.78 4.96 -2.39 -0.01 0.77 16 39 H 0.05 2.25 6.16 -2.39 -0.01 2.23 16 40 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 42 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.03 1.33 6.58 -2.39 -0.02 1.32 16 49 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 50 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 51 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.01 0.35 5.54 -2.38 -0.01 0.34 16 53 H 0.05 2.10 8.01 -2.39 -0.02 2.08 16 Total: -1.00 -85.71 382.75 1.85 -83.86 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.84 Total: 23.93 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.99 Total: -7.02 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -5.44 Total: -108.23 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.39 Total: -40.99 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.85 Total: 48.44 kcal Total: -85.71 1.85 -83.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168603.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.359 kcal (2) G-P(sol) polarization free energy of solvation -85.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds