Wall clock time and date at job start Tue Mar 31 2020 20:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46748 * 2 1 4 4 H 1.09002 * 109.47299 * 305.00240 * 3 2 1 5 5 C 1.50702 * 109.47127 * 184.99902 * 3 2 1 6 6 H 1.07997 * 120.00297 * 240.00143 * 5 3 2 7 7 C 1.37879 * 119.99554 * 60.00082 * 5 3 2 8 8 N 1.31515 * 120.00264 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99746 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47062 * 120.00322 * 9 7 5 12 12 H 1.48504 * 109.46902 * 239.99968 * 9 7 5 13 13 N 1.46898 * 109.47134 * 65.00331 * 3 2 1 14 14 C 1.48512 * 111.00165 * 64.60327 * 13 3 2 15 15 C 1.54262 * 104.74188 * 159.33418 * 14 13 3 16 16 H 1.09003 * 113.16777 * 212.65805 * 15 14 13 17 17 C 1.54384 * 108.77564 * 86.60346 * 15 14 13 18 18 O 1.44380 * 104.92030 * 272.86148 * 17 15 14 19 19 C 1.44390 * 105.25577 * 319.23961 * 18 17 15 20 20 C 1.54394 * 104.91673 * 40.76039 * 19 18 17 21 21 C 1.52999 * 113.20633 * 213.17907 * 20 19 18 22 22 C 1.50697 * 109.47200 * 297.07217 * 21 20 19 23 23 O 1.21284 * 119.99581 * 359.97438 * 22 21 20 24 24 N 1.34773 * 120.00114 * 180.02562 * 22 21 20 25 25 C 1.46504 * 120.00052 * 179.97438 * 24 22 21 26 26 C 1.52999 * 109.47138 * 179.97438 * 25 24 22 27 27 C 1.53004 * 117.49708 * 243.74679 * 26 25 24 28 28 C 1.52997 * 117.49778 * 175.08702 * 26 25 24 29 29 C 1.48506 * 111.00371 * 179.97438 * 13 3 2 30 30 H 1.08994 * 109.47273 * 299.99474 * 1 2 3 31 31 H 1.08999 * 109.47239 * 59.99863 * 1 2 3 32 32 H 1.09007 * 109.46718 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47162 * 240.00888 * 2 1 3 34 34 H 1.08998 * 109.47687 * 120.00423 * 2 1 3 35 35 H 0.96999 * 119.99898 * 179.97438 * 8 7 5 36 36 H 1.08997 * 110.38383 * 278.15208 * 14 13 3 37 37 H 1.09006 * 110.38161 * 40.51824 * 14 13 3 38 38 H 1.09006 * 110.35498 * 31.71679 * 17 15 14 39 39 H 1.09001 * 110.35156 * 153.99961 * 17 15 14 40 40 H 1.09000 * 110.34746 * 281.89985 * 19 18 17 41 41 H 1.08996 * 110.35194 * 159.61990 * 19 18 17 42 42 H 1.09007 * 109.47219 * 57.07020 * 21 20 19 43 43 H 1.08997 * 109.47149 * 177.06340 * 21 20 19 44 44 H 0.96996 * 119.99848 * 359.97438 * 24 22 21 45 45 H 1.09000 * 109.46744 * 299.99514 * 25 24 22 46 46 H 1.09002 * 109.46890 * 59.99533 * 25 24 22 47 47 H 1.08999 * 115.54962 * 29.41255 * 26 25 24 48 48 H 1.08996 * 117.49375 * 359.97438 * 27 26 25 49 49 H 1.09000 * 117.49807 * 145.02269 * 27 26 25 50 50 H 1.09004 * 117.49870 * 214.98067 * 28 26 25 51 51 H 1.09000 * 117.49861 * 359.97438 * 28 26 25 52 52 H 1.08999 * 110.38017 * 319.48835 * 29 13 3 53 53 H 1.08997 * 110.37909 * 81.85109 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1943 11 1 6.4970 -0.5172 -1.4631 12 1 6.3988 1.6171 -2.6103 13 7 1.6513 2.0993 1.2552 14 6 2.3150 1.4583 2.4190 15 6 2.2610 2.5208 3.5360 16 1 3.1202 2.4830 4.2057 17 6 0.9169 2.3878 4.2837 18 8 -0.0076 3.2059 3.5350 19 6 0.7361 4.3914 3.1796 20 6 2.1386 3.8783 2.7879 21 6 3.2598 4.8562 3.1449 22 6 3.0755 6.1360 2.3709 23 8 2.1398 6.2541 1.6084 24 7 3.9511 7.1489 2.5253 25 6 3.7723 8.3929 1.7724 26 6 4.8934 9.3708 2.1296 27 6 4.4979 10.6767 2.8217 28 6 4.9506 10.6916 1.3595 29 6 2.1308 3.5043 1.2915 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0601 -2.9503 36 1 1.7715 0.5628 2.7201 37 1 3.3494 1.2126 2.1782 38 1 0.5863 1.3491 4.2876 39 1 1.0121 2.7600 5.3038 40 1 0.8040 5.0663 4.0329 41 1 0.2666 4.8941 2.3341 42 1 3.2288 5.0701 4.2133 43 1 4.2228 4.4132 2.8909 44 1 4.6996 7.0542 3.1349 45 1 3.8032 8.1786 0.7041 46 1 2.8094 8.8361 2.0264 47 1 5.8405 8.9150 2.4183 48 1 3.4389 10.8393 3.0222 49 1 5.1850 11.0803 3.5654 50 1 5.9355 11.1051 1.1419 51 1 4.1898 10.8637 0.5982 52 1 3.1368 3.5729 0.8776 53 1 1.4482 4.1526 0.7420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170611.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:08 Heat of formation + Delta-G solvation = -49.765936 kcal Electronic energy + Delta-G solvation = -31219.093660 eV Core-core repulsion = 27284.429440 eV Total energy + Delta-G solvation = -3934.664220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60680 -39.24481 -37.70221 -36.56841 -34.22440 -33.87279 -32.08067 -31.09342 -30.11623 -28.28289 -26.52139 -25.70717 -25.24224 -23.86908 -22.75333 -22.19038 -21.26657 -20.95569 -20.25969 -19.21209 -18.48915 -17.06696 -16.65068 -16.35217 -15.79470 -15.59026 -15.06160 -14.95404 -14.81209 -14.49745 -14.31150 -14.11082 -13.60709 -13.37435 -13.11958 -13.01138 -12.71970 -12.57943 -12.32385 -12.14746 -11.89657 -11.73386 -11.53803 -11.25567 -11.01158 -10.91830 -10.89400 -10.85982 -10.61515 -10.54836 -10.53115 -10.47777 -10.39816 -9.99326 -9.89810 -9.58633 -9.54219 -9.34384 -9.22860 -9.08171 -8.91257 -8.32113 -7.06345 -5.95194 -4.08298 2.75219 3.03480 3.24798 3.33469 3.34312 3.46481 4.30836 4.38778 4.40658 4.52863 4.55954 4.66523 4.88092 4.92926 5.06155 5.12165 5.27585 5.28406 5.32755 5.35862 5.42397 5.51545 5.52797 5.56125 5.57155 5.62226 5.74746 5.84474 5.94126 6.01052 6.08485 6.13858 6.33940 6.39576 6.40276 6.46481 6.58322 6.64715 6.78228 6.81056 6.86120 6.94554 7.18653 7.29785 7.30411 7.40204 7.46428 7.66539 7.79862 8.06406 8.21410 8.28195 8.33998 8.50519 9.02998 9.57794 11.03716 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.003873 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.436150 B = 7227.080639 C = 9212.102002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.203 3.797 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.497 5.497 14 C 0.046 3.954 15 C -0.126 4.126 16 H 0.085 0.915 17 C 0.060 3.940 18 O -0.359 6.359 19 C 0.074 3.926 20 C -0.079 4.079 21 C -0.119 4.119 22 C 0.514 3.486 23 O -0.523 6.523 24 N -0.735 5.735 25 C 0.151 3.849 26 C -0.169 4.169 27 C -0.178 4.178 28 C -0.171 4.171 29 C 0.063 3.937 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.023 0.977 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.399 0.601 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.098 0.902 52 H 0.050 0.950 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 14.579 13.579 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.221 5.221 14 C -0.083 4.083 15 C -0.145 4.145 16 H 0.103 0.897 17 C -0.017 4.017 18 O -0.277 6.277 19 C -0.003 4.003 20 C -0.081 4.081 21 C -0.159 4.159 22 C 0.300 3.700 23 O -0.398 6.398 24 N -0.389 5.389 25 C 0.027 3.973 26 C -0.188 4.188 27 C -0.215 4.215 28 C -0.209 4.209 29 C -0.066 4.066 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.233 0.767 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.128 0.872 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.068 0.932 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.500 14.470 12.774 19.360 hybrid contribution 2.854 0.047 0.075 2.856 sum 4.354 14.517 12.849 19.870 Atomic orbital electron populations 1.21713 0.98786 0.98258 1.00855 1.21532 0.92320 0.99032 1.01676 1.19378 0.92915 0.91341 0.86779 0.94408 1.21734 0.92918 1.37849 1.05359 0.92487 1.24905 0.97558 0.95175 0.95756 1.69892 1.34554 1.38339 1.09353 0.86673 0.86534 0.77666 0.77885 1.20090 1.21031 1.21085 1.65756 1.51783 1.00795 1.03762 1.22962 0.99302 0.95438 0.90565 1.23385 0.97833 0.95581 0.97679 0.89691 1.23308 0.88789 0.96369 0.93282 1.89140 1.34458 1.31020 1.73130 1.23292 0.90631 0.87490 0.98876 1.22345 0.93946 0.93137 0.98648 1.21574 1.01206 0.92901 1.00220 1.20714 0.81944 0.84700 0.82625 1.90722 1.30874 1.81473 1.36708 1.45993 1.30569 1.15389 1.46923 1.20839 0.96705 0.83170 0.96565 1.22471 1.00355 0.89890 1.06034 1.23101 1.02263 1.00543 0.95576 1.22968 1.03280 0.99549 0.95086 1.22896 1.00157 0.91913 0.91585 0.93049 0.94287 0.95788 0.89178 0.95211 0.93005 0.91588 0.92352 0.89409 0.93884 0.94410 0.88366 0.89133 0.88402 0.76749 0.90995 0.91435 0.87238 0.88517 0.88715 0.88477 0.88342 0.93161 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.80 37.16 0.36 -2.64 16 2 C -0.11 -2.61 5.18 -26.73 -0.14 -2.74 16 3 C 0.20 5.11 1.83 -68.86 -0.13 4.98 16 4 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.54 -14.29 6.51 -34.44 -0.22 -14.51 16 6 H 0.06 1.50 5.67 -52.49 -0.30 1.20 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.40 16 9 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.50 -10.84 4.70 -223.66 -1.05 -11.89 16 14 C 0.05 0.88 4.72 -2.27 -0.01 0.87 16 15 C -0.13 -1.93 3.85 -87.91 -0.34 -2.26 16 16 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 17 C 0.06 0.88 7.05 37.88 0.27 1.15 16 18 O -0.36 -6.42 11.50 -35.23 -0.41 -6.83 16 19 C 0.07 1.21 5.66 37.89 0.21 1.42 16 20 C -0.08 -1.26 0.65 -151.81 -0.10 -1.36 16 21 C -0.12 -1.47 4.91 -27.89 -0.14 -1.60 16 22 C 0.51 6.96 7.43 -10.99 -0.08 6.88 16 23 O -0.52 -9.11 13.14 5.55 0.07 -9.04 16 24 N -0.74 -7.47 5.56 -60.29 -0.33 -7.80 16 25 C 0.15 1.49 5.96 -4.04 -0.02 1.47 16 26 C -0.17 -1.24 5.84 -90.62 -0.53 -1.77 16 27 C -0.18 -1.15 10.18 -26.69 -0.27 -1.42 16 28 C -0.17 -1.16 10.25 -26.69 -0.27 -1.43 16 29 C 0.06 1.29 4.19 -2.29 -0.01 1.28 16 30 H 0.05 1.10 7.75 -51.93 -0.40 0.70 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 34 H 0.03 0.70 6.83 -51.93 -0.35 0.35 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 36 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 37 H 0.06 1.23 5.88 -51.93 -0.31 0.93 16 38 H 0.09 1.28 7.50 -51.93 -0.39 0.89 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.54 8.01 -51.93 -0.42 0.12 16 41 H 0.10 1.79 6.80 -51.93 -0.35 1.44 16 42 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.40 2.89 8.40 -40.82 -0.34 2.55 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 47 H 0.11 0.72 8.04 -51.93 -0.42 0.30 16 48 H 0.10 0.63 8.03 -51.93 -0.42 0.22 16 49 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.05 1.13 6.08 -51.93 -0.32 0.82 16 53 H 0.08 1.70 6.68 -51.93 -0.35 1.35 16 LS Contribution 400.47 15.07 6.03 6.03 Total: -1.00 -30.97 400.47 -10.80 -41.78 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.21 Total: 6.15 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.51 Total: -9.95 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.76 Total: -44.09 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.33 Total: -15.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.97 -10.80 -41.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170611.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.989 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds