Wall clock time and date at job start Tue Mar 31 2020 20:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 H 1.09007 * 109.46612 * 305.00245 * 3 2 1 5 5 C 1.50698 * 109.47230 * 185.00605 * 3 2 1 6 6 H 1.07994 * 119.99482 * 240.00021 * 5 3 2 7 7 C 1.37872 * 120.00109 * 59.99487 * 5 3 2 8 8 N 1.31513 * 120.00154 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99890 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47342 * 59.99788 * 9 7 5 11 11 H 1.48495 * 109.47021 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46976 * 300.00002 * 9 7 5 13 13 N 1.46898 * 109.47387 * 64.99997 * 3 2 1 14 14 C 1.46803 * 111.00394 * 190.00343 * 13 3 2 15 15 C 1.53260 * 109.44298 * 170.76736 * 14 13 3 16 16 C 1.53240 * 108.61067 * 55.55842 * 15 14 13 17 17 C 1.52734 * 117.82037 * 163.05375 * 16 15 14 18 18 C 1.52764 * 117.78075 * 94.06207 * 16 15 14 19 19 H 1.08994 * 117.50136 * 215.27217 * 18 16 15 20 20 C 1.50702 * 117.50694 * 0.33275 * 18 16 15 21 21 O 1.21280 * 119.99568 * 70.48977 * 20 18 16 22 22 N 1.34769 * 120.00051 * 250.48868 * 20 18 16 23 23 C 1.47160 * 120.98339 * 359.72271 * 22 20 18 24 24 C 1.53713 * 108.16303 * 129.42770 * 23 22 20 25 25 O 1.42961 * 109.14563 * 52.54013 * 24 23 22 26 26 C 1.42965 * 114.16658 * 297.28458 * 25 24 23 27 27 C 1.47155 * 120.98353 * 179.97438 * 22 20 18 28 28 C 1.53214 * 114.77117 * 308.61870 * 16 15 14 29 29 C 1.46806 * 110.99713 * 65.27047 * 13 3 2 30 30 H 1.09003 * 109.47334 * 299.99921 * 1 2 3 31 31 H 1.08998 * 109.47535 * 60.00159 * 1 2 3 32 32 H 1.09008 * 109.47307 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46874 * 239.99996 * 2 1 3 34 34 H 1.08998 * 109.47535 * 119.99841 * 2 1 3 35 35 H 0.97005 * 120.00356 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.47498 * 290.76005 * 14 13 3 37 37 H 1.09000 * 109.47669 * 50.77420 * 14 13 3 38 38 H 1.08994 * 109.61091 * 175.30682 * 15 14 13 39 39 H 1.09002 * 109.61131 * 295.83103 * 15 14 13 40 40 H 1.08999 * 117.50384 * 359.73969 * 17 16 15 41 41 H 1.08996 * 117.50417 * 144.78061 * 17 16 15 42 42 H 1.08998 * 109.68167 * 249.21293 * 23 22 20 43 43 H 1.09008 * 109.67791 * 9.76181 * 23 22 20 44 44 H 1.09000 * 109.65813 * 292.57523 * 24 23 22 45 45 H 1.09000 * 109.43835 * 172.37235 * 24 23 22 46 46 H 1.08992 * 109.51544 * 302.65973 * 26 25 24 47 47 H 1.08999 * 109.55556 * 182.52782 * 26 25 24 48 48 H 1.08998 * 109.67863 * 350.23673 * 27 22 20 49 49 H 1.09001 * 109.67748 * 110.79408 * 27 22 20 50 50 H 1.08995 * 109.61606 * 291.65091 * 28 16 15 51 51 H 1.08999 * 109.61346 * 171.12492 * 28 16 15 52 52 H 1.08996 * 109.48336 * 309.22777 * 29 13 3 53 53 H 1.09005 * 109.47265 * 69.24353 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1240 6 1 4.1471 1.8889 0.6521 7 6 4.1431 0.8784 -1.2281 8 7 3.4060 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3814 10 1 6.5967 0.1455 -0.2345 11 1 6.3976 0.2168 -2.6506 12 1 6.5003 2.2801 -1.3811 13 7 1.6514 2.0993 1.2552 14 6 1.9122 3.5428 1.1964 15 6 1.2882 4.2242 2.4192 16 6 1.8353 3.5547 3.6844 17 6 1.6767 4.2976 5.0094 18 6 3.0549 4.1861 4.3535 19 1 3.7794 3.5153 4.8151 20 6 3.6287 5.4292 3.7237 21 8 3.0173 6.4751 3.7802 22 7 4.8211 5.3787 3.0978 23 6 5.5841 4.1226 3.0217 24 6 5.9820 3.8919 1.5550 25 8 6.6350 5.0619 1.0566 26 6 5.8109 6.2300 1.0401 27 6 5.4013 6.5791 2.4750 28 6 1.7212 2.0270 3.7029 29 6 2.3196 1.4758 2.4040 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8290 -0.0604 -2.9504 36 1 2.9881 3.7179 1.1923 37 1 1.4736 3.9547 0.2875 38 1 1.5506 5.2821 2.4221 39 1 0.2043 4.1135 2.3863 40 1 1.1850 5.2701 4.9856 41 1 1.4944 3.7002 5.9027 42 1 6.4785 4.1983 3.6401 43 1 4.9653 3.2956 3.3699 44 1 5.0907 3.6913 0.9604 45 1 6.6611 3.0416 1.4928 46 1 4.9190 6.0379 0.4437 47 1 6.3660 7.0621 0.6072 48 1 4.6614 7.3794 2.4611 49 1 6.2776 6.8983 3.0393 50 1 0.6723 1.7392 3.7733 51 1 2.2704 1.6293 4.5563 52 1 2.1750 0.3961 2.3666 53 1 3.3856 1.7010 2.3706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:11 Heat of formation + Delta-G solvation = -65.843022 kcal Electronic energy + Delta-G solvation = -32884.572371 eV Core-core repulsion = 28949.210996 eV Total energy + Delta-G solvation = -3935.361375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86393 -40.25731 -39.31295 -37.65532 -35.85135 -34.87082 -33.27189 -32.57930 -31.76880 -30.44398 -29.15524 -27.78797 -25.98697 -25.02623 -24.56185 -24.09329 -22.79960 -22.60289 -20.99916 -20.48354 -19.40978 -18.49129 -18.11232 -17.51447 -17.10572 -16.89530 -16.62198 -16.29375 -16.12951 -15.99206 -15.67331 -15.34924 -15.17975 -14.94630 -14.75472 -14.27558 -14.09622 -13.89673 -13.60566 -13.47683 -13.25692 -13.17796 -13.16502 -12.90329 -12.83368 -12.64695 -12.55806 -12.44047 -12.26581 -12.04761 -11.83481 -11.80596 -11.62602 -11.49141 -11.35927 -11.15817 -11.01272 -10.92953 -10.69934 -10.49954 -10.36503 -9.66130 -8.82306 -7.97461 -6.19213 1.37932 1.39833 1.42286 1.44616 1.77955 2.41865 2.74717 2.84173 3.21352 3.35774 3.46685 3.64235 3.74929 3.78089 3.90109 3.94220 4.01031 4.02920 4.14337 4.19105 4.40942 4.44102 4.46496 4.54204 4.60192 4.63872 4.66236 4.72082 4.75206 4.79046 4.80951 4.89633 4.94258 4.96153 4.99431 5.05467 5.08587 5.21804 5.23337 5.27799 5.33292 5.41166 5.46483 5.49416 5.58739 5.69615 5.85234 5.99183 6.14524 6.22747 6.27022 6.46113 6.77192 7.02500 7.05125 7.51634 8.96829 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009803 B = 0.006278 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.572559 B = 4458.779018 C = 6546.443315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.221 3.779 4 H -0.008 1.008 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.025 3.975 8 N -0.914 5.914 9 Si 0.926 3.074 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.273 1.273 13 N -0.528 5.528 14 C 0.080 3.920 15 C -0.077 4.077 16 C -0.083 4.083 17 C -0.123 4.123 18 C -0.197 4.197 19 H 0.144 0.856 20 C 0.550 3.450 21 O -0.576 6.576 22 N -0.614 5.614 23 C 0.083 3.917 24 C 0.041 3.959 25 O -0.393 6.393 26 C 0.047 3.953 27 C 0.081 3.919 28 C -0.069 4.069 29 C 0.067 3.933 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.258 0.742 36 H 0.012 0.988 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.036 0.964 47 H 0.131 0.869 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.066 0.934 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 6.068 14.358 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.010 0.990 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.175 4.175 8 N -0.554 5.554 9 Si 0.752 3.248 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.198 1.198 13 N -0.252 5.252 14 C -0.049 4.049 15 C -0.115 4.115 16 C -0.084 4.084 17 C -0.160 4.160 18 C -0.218 4.218 19 H 0.161 0.839 20 C 0.340 3.660 21 O -0.456 6.456 22 N -0.347 5.347 23 C -0.039 4.039 24 C -0.036 4.036 25 O -0.311 6.311 26 C -0.030 4.030 27 C -0.042 4.042 28 C -0.107 4.107 29 C -0.061 4.061 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.060 0.940 45 H 0.125 0.875 46 H 0.054 0.946 47 H 0.149 0.851 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.110 0.890 52 H 0.085 0.915 53 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.452 6.468 14.203 15.673 hybrid contribution 1.770 0.101 -1.238 2.163 sum 3.222 6.569 12.965 14.887 Atomic orbital electron populations 1.21570 0.96653 0.99624 1.00483 1.21433 0.94189 0.98157 1.00461 1.19022 0.92076 0.91380 0.86128 0.98984 1.21973 0.93747 1.36836 1.05095 0.92033 1.25517 1.00838 0.95310 0.95805 1.70000 1.36057 1.39440 1.09858 0.86111 0.82712 0.78429 0.77538 1.18747 1.22021 1.19844 1.62124 1.57508 1.01572 1.03969 1.21680 0.96859 0.89699 0.96625 1.21214 1.00702 0.97305 0.92275 1.21465 0.97344 0.95663 0.93959 1.23100 0.94390 1.02118 0.96431 1.22499 0.93828 0.98152 1.07274 0.83886 1.20053 0.79551 0.89471 0.76896 1.90628 1.60330 1.33248 1.61443 1.48130 1.19987 1.11217 1.55359 1.22585 0.97645 0.86562 0.97133 1.23162 0.98214 0.88342 0.93881 1.87914 1.39506 1.18393 1.85311 1.23079 0.95393 0.88978 0.95599 1.22307 0.99755 0.88146 0.93943 1.21301 1.02479 0.89976 0.96895 1.21933 0.95438 0.98622 0.90088 0.92225 0.95516 0.93707 0.92238 0.94305 0.93302 0.96951 0.94366 0.92788 0.90572 0.88970 0.84978 0.88177 0.87651 0.94003 0.87549 0.94589 0.85099 0.88869 0.88836 0.90065 0.89034 0.91539 0.96069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.80 71.98 0.71 -4.16 16 2 C -0.10 -4.70 5.16 30.60 0.16 -4.55 16 3 C 0.22 10.45 1.70 44.17 0.08 10.53 16 4 H -0.01 -0.43 7.94 -2.38 -0.02 -0.45 16 5 C -0.54 -26.84 7.30 25.60 0.19 -26.65 16 6 H 0.06 2.96 4.63 -2.91 -0.01 2.95 16 7 C 0.02 1.30 5.29 84.65 0.45 1.75 16 8 N -0.91 -51.11 11.29 21.45 0.24 -50.87 16 9 Si 0.93 41.59 29.54 68.60 2.03 43.62 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.53 -20.46 3.98 -874.81 -3.48 -23.95 16 14 C 0.08 3.05 5.17 86.41 0.45 3.50 16 15 C -0.08 -2.42 5.53 30.76 0.17 -2.25 16 16 C -0.08 -2.12 2.02 -52.20 -0.11 -2.22 16 17 C -0.12 -2.61 9.51 30.52 0.29 -2.32 16 18 C -0.20 -4.65 4.59 -11.60 -0.05 -4.70 16 19 H 0.14 2.68 6.99 -2.39 -0.02 2.66 16 20 C 0.55 15.87 6.31 87.66 0.55 16.43 16 21 O -0.58 -19.96 14.71 -3.03 -0.04 -20.00 16 22 N -0.61 -16.21 3.01 -816.58 -2.46 -18.67 16 23 C 0.08 1.97 6.51 86.49 0.56 2.54 16 24 C 0.04 1.24 7.00 72.22 0.51 1.75 16 25 O -0.39 -11.96 10.74 -148.98 -1.60 -13.56 16 26 C 0.05 1.20 6.98 72.07 0.50 1.70 16 27 C 0.08 1.95 6.63 86.34 0.57 2.52 16 28 C -0.07 -1.68 5.87 30.75 0.18 -1.49 16 29 C 0.07 2.23 4.77 86.41 0.41 2.64 16 30 H 0.06 2.15 7.75 -2.39 -0.02 2.14 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 3.10 5.95 -2.39 -0.01 3.09 16 34 H 0.04 1.68 6.15 -2.39 -0.01 1.66 16 35 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 36 H 0.01 0.51 6.30 -2.38 -0.02 0.49 16 37 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 38 H 0.05 1.83 6.14 -2.39 -0.01 1.82 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.09 2.24 7.67 -2.39 -0.02 2.23 16 41 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.11 2.35 5.86 -2.38 -0.01 2.34 16 44 H 0.04 1.56 5.78 -2.39 -0.01 1.55 16 45 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.09 2.38 7.08 -2.39 -0.02 2.36 16 49 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 52 H 0.07 2.30 5.99 -2.39 -0.01 2.29 16 53 H 0.02 0.75 6.52 -2.38 -0.02 0.74 16 Total: -1.00 -62.88 391.26 1.19 -61.69 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.90 Total: 26.74 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.61 Total: -5.01 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -5.70 Total: -93.48 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.64 Total: -33.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -62.88 1.19 -61.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds