Wall clock time and date at job start Tue Mar 31 2020 20:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 H 1.09001 * 109.47312 * 57.86463 * 3 2 1 5 5 C 1.50704 * 109.46864 * 177.86553 * 3 2 1 6 6 H 1.07997 * 119.99938 * 120.00436 * 5 3 2 7 7 C 1.37877 * 120.00064 * 299.99402 * 5 3 2 8 8 N 1.31513 * 119.99937 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47228 * 90.00290 * 9 7 5 11 11 H 1.48506 * 109.46938 * 210.00029 * 9 7 5 12 12 H 1.48495 * 109.47047 * 329.99702 * 9 7 5 13 13 N 1.46895 * 109.47229 * 297.86241 * 3 2 1 14 14 C 1.46814 * 111.00033 * 298.37399 * 13 3 2 15 15 C 1.53261 * 109.44451 * 170.79722 * 14 13 3 16 16 C 1.53220 * 108.61875 * 55.58921 * 15 14 13 17 17 C 1.52734 * 117.84378 * 162.97585 * 16 15 14 18 18 C 1.52759 * 117.78505 * 93.96900 * 16 15 14 19 19 H 1.09000 * 117.50634 * 215.29883 * 18 16 15 20 20 C 1.50701 * 117.51127 * 0.36589 * 18 16 15 21 21 O 1.21279 * 119.99850 * 66.14983 * 20 18 16 22 22 N 1.34777 * 120.00221 * 246.16057 * 20 18 16 23 23 C 1.47149 * 120.97867 * 359.71083 * 22 20 18 24 24 C 1.53718 * 108.15981 * 129.43615 * 23 22 20 25 25 O 1.42956 * 109.14666 * 52.53606 * 24 23 22 26 26 C 1.42964 * 114.16854 * 297.29077 * 25 24 23 27 27 C 1.47148 * 120.98198 * 179.97438 * 22 20 18 28 28 C 1.53212 * 114.74333 * 308.57650 * 16 15 14 29 29 C 1.46808 * 111.00398 * 173.66163 * 13 3 2 30 30 H 1.09004 * 109.46429 * 55.27750 * 1 2 3 31 31 H 1.08995 * 109.47605 * 175.27362 * 1 2 3 32 32 H 1.08996 * 109.47318 * 295.28293 * 1 2 3 33 33 H 1.08997 * 109.46973 * 239.99436 * 2 1 3 34 34 H 1.09001 * 109.46684 * 119.99648 * 2 1 3 35 35 H 0.97000 * 120.00216 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47620 * 50.81016 * 14 13 3 37 37 H 1.08990 * 109.47643 * 290.79483 * 14 13 3 38 38 H 1.09003 * 109.61308 * 295.84778 * 15 14 13 39 39 H 1.09005 * 109.61399 * 175.32767 * 15 14 13 40 40 H 1.08999 * 117.50005 * 144.79418 * 17 16 15 41 41 H 1.08998 * 117.50707 * 359.73782 * 17 16 15 42 42 H 1.09003 * 109.68453 * 249.21284 * 23 22 20 43 43 H 1.08996 * 109.68314 * 9.76713 * 23 22 20 44 44 H 1.09003 * 109.65403 * 292.56988 * 24 23 22 45 45 H 1.09003 * 109.44206 * 172.37328 * 24 23 22 46 46 H 1.08999 * 109.50876 * 302.65570 * 26 25 24 47 47 H 1.09005 * 109.55470 * 182.53280 * 26 25 24 48 48 H 1.08999 * 109.68422 * 350.23438 * 27 22 20 49 49 H 1.09007 * 109.67885 * 110.78502 * 27 22 20 50 50 H 1.09002 * 109.61391 * 171.16002 * 28 16 15 51 51 H 1.09001 * 109.61274 * 291.68295 * 28 16 15 52 52 H 1.08999 * 109.47667 * 309.19428 * 29 13 3 53 53 H 1.09002 * 109.47509 * 69.20099 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6458 1.9673 0.8702 5 6 3.5461 1.4427 0.0529 6 1 4.1144 1.9004 -0.7433 7 6 4.1986 0.8587 1.1180 8 7 3.5067 0.3011 2.0874 9 14 6.0655 0.8597 1.1839 10 1 6.5354 2.0809 1.8860 11 1 6.5355 -0.3440 1.9158 12 1 6.6095 0.8426 -0.1977 13 7 1.5930 2.1199 -1.2244 14 6 2.1377 1.4620 -2.4185 15 6 1.4735 2.0456 -3.6703 16 6 1.6716 3.5649 -3.6660 17 6 1.4554 4.3163 -4.9780 18 6 2.8707 4.1289 -4.4261 19 1 3.3670 5.0036 -4.0058 20 6 3.7697 3.1485 -5.1342 21 8 3.3491 2.5113 -6.0765 22 7 5.0412 2.9796 -4.7203 23 6 5.5757 3.7458 -3.5834 24 6 6.2306 2.7574 -2.6051 25 8 7.1654 1.9430 -3.3169 26 6 6.5765 1.1275 -4.3327 27 6 5.9376 2.0279 -5.3956 28 6 1.2581 4.2618 -2.3657 29 6 1.9350 3.5472 -1.1908 30 1 -0.3632 0.5854 -0.8447 31 1 -0.3634 -1.0241 -0.0847 32 1 -0.3634 0.4389 0.9292 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9657 -0.1100 2.8365 36 1 1.9380 0.3916 -2.3667 37 1 3.2137 1.6290 -2.4665 38 1 0.4081 1.8155 -3.6603 39 1 1.9341 1.6192 -4.5615 40 1 1.0209 5.3143 -4.9208 41 1 1.1748 3.7305 -5.8533 42 1 6.3178 4.4608 -3.9389 43 1 4.7646 4.2756 -3.0840 44 1 5.4650 2.1249 -2.1556 45 1 6.7512 3.3113 -1.8239 46 1 5.8123 0.4891 -3.8895 47 1 7.3454 0.5080 -4.7945 48 1 5.3662 1.4195 -6.0967 49 1 6.7154 2.5726 -5.9308 50 1 1.5760 5.3041 -2.3921 51 1 0.1755 4.2096 -2.2509 52 1 1.5891 3.9818 -0.2530 53 1 3.0160 3.6638 -1.2685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172350.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:15 Heat of formation + Delta-G solvation = -65.359490 kcal Electronic energy + Delta-G solvation = -32901.172705 eV Core-core repulsion = 28965.832298 eV Total energy + Delta-G solvation = -3935.340407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85524 -40.28389 -39.30386 -37.67013 -35.85409 -34.86136 -33.29606 -32.57367 -31.78189 -30.44156 -29.15224 -27.80723 -25.98301 -25.03331 -24.47623 -24.23793 -22.79077 -22.60365 -20.95618 -20.49547 -19.39777 -18.56980 -18.09744 -17.49414 -17.17076 -16.85718 -16.62045 -16.33837 -16.11558 -16.00725 -15.65973 -15.34725 -15.21650 -14.89112 -14.78954 -14.36054 -14.12381 -13.82698 -13.58970 -13.51428 -13.27012 -13.20233 -13.12288 -12.92359 -12.82654 -12.68878 -12.53452 -12.42512 -12.28423 -12.04390 -11.83091 -11.79219 -11.69863 -11.53984 -11.32084 -11.19729 -10.98560 -10.89955 -10.73364 -10.49785 -10.39302 -9.65427 -8.84089 -7.99286 -6.20828 1.34143 1.39471 1.40314 1.46401 1.78616 2.40202 2.74385 2.85811 3.19438 3.36285 3.47404 3.64064 3.75285 3.78278 3.91086 3.94798 4.00808 4.02896 4.13202 4.18813 4.40194 4.44670 4.47020 4.53817 4.62109 4.63949 4.65325 4.70935 4.75118 4.76464 4.81107 4.88625 4.92465 4.93532 5.00794 5.05731 5.08929 5.22199 5.23390 5.28164 5.33633 5.38255 5.43418 5.49091 5.55924 5.67382 5.82818 5.98296 6.09392 6.23487 6.25696 6.45665 6.76276 7.00945 7.05882 7.49796 8.94899 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.006403 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.797066 B = 4371.760896 C = 6322.190662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.025 3.975 8 N -0.913 5.913 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.528 5.528 14 C 0.083 3.917 15 C -0.081 4.081 16 C -0.084 4.084 17 C -0.122 4.122 18 C -0.198 4.198 19 H 0.144 0.856 20 C 0.549 3.451 21 O -0.576 6.576 22 N -0.615 5.615 23 C 0.083 3.917 24 C 0.040 3.960 25 O -0.392 6.392 26 C 0.046 3.954 27 C 0.082 3.918 28 C -0.066 4.066 29 C 0.067 3.933 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.048 0.952 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.037 0.963 45 H 0.113 0.887 46 H 0.033 0.967 47 H 0.131 0.869 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.058 0.942 53 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 9.711 -12.715 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.754 3.246 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.188 1.188 13 N -0.252 5.252 14 C -0.045 4.045 15 C -0.119 4.119 16 C -0.085 4.085 17 C -0.159 4.159 18 C -0.218 4.218 19 H 0.161 0.839 20 C 0.339 3.661 21 O -0.456 6.456 22 N -0.348 5.348 23 C -0.040 4.040 24 C -0.037 4.037 25 O -0.311 6.311 26 C -0.031 4.031 27 C -0.041 4.041 28 C -0.104 4.104 29 C -0.062 4.062 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.052 0.948 47 H 0.149 0.851 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.100 0.900 52 H 0.077 0.923 53 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.562 9.245 -13.020 15.979 hybrid contribution 1.964 -0.683 0.723 2.201 sum 2.526 8.562 -12.297 15.196 Atomic orbital electron populations 1.21576 0.96300 0.99733 1.00787 1.21466 0.94474 0.98724 0.99876 1.19017 0.91599 0.90996 0.87003 0.97513 1.21981 0.93721 1.36151 1.05745 0.92540 1.25505 1.01011 0.95274 0.95657 1.69996 1.36105 1.38645 1.10513 0.86033 0.82686 0.77369 0.78527 1.20014 1.22050 1.18814 1.62146 1.58482 1.02264 1.02277 1.21676 0.95188 0.97517 0.90165 1.21268 1.01328 0.92926 0.96380 1.21456 0.97926 0.94796 0.94275 1.23103 0.93632 1.02922 0.96293 1.22512 0.90996 1.01557 1.06750 0.83873 1.20063 0.81278 0.82206 0.82502 1.90623 1.74609 1.49809 1.30559 1.48131 1.11563 1.41962 1.33148 1.22609 1.00428 0.94159 0.86770 1.23191 0.92996 0.93164 0.94359 1.87906 1.34544 1.57849 1.50770 1.23074 0.98908 0.92526 0.88576 1.22291 0.93717 0.92506 0.95566 1.21269 1.01241 0.98093 0.89778 1.21887 0.97254 0.88867 0.98147 0.92194 0.94027 0.94621 0.95716 0.92203 0.93253 0.93312 0.97405 0.90644 0.92623 0.84920 0.88958 0.88033 0.87534 0.94500 0.86910 0.94830 0.85119 0.88977 0.88755 0.88924 0.90004 0.92309 0.96229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.84 71.98 0.71 -4.31 16 2 C -0.11 -5.05 5.00 30.59 0.15 -4.89 16 3 C 0.22 10.50 1.76 44.17 0.08 10.58 16 4 H 0.01 0.37 8.02 -2.39 -0.02 0.35 16 5 C -0.54 -27.27 7.26 25.60 0.19 -27.09 16 6 H 0.06 2.83 4.28 -2.91 -0.01 2.81 16 7 C 0.03 1.33 5.30 84.65 0.45 1.78 16 8 N -0.91 -51.23 11.30 21.45 0.24 -50.99 16 9 Si 0.93 42.32 29.54 68.60 2.03 44.34 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.53 -20.63 3.80 -874.80 -3.33 -23.95 16 14 C 0.08 3.18 4.80 86.41 0.41 3.60 16 15 C -0.08 -2.59 5.52 30.76 0.17 -2.42 16 16 C -0.08 -2.14 2.02 -52.21 -0.11 -2.25 16 17 C -0.12 -2.59 9.51 30.52 0.29 -2.30 16 18 C -0.20 -4.67 4.73 -11.60 -0.05 -4.73 16 19 H 0.14 2.66 6.77 -2.39 -0.02 2.64 16 20 C 0.55 15.96 6.46 87.66 0.57 16.52 16 21 O -0.58 -20.10 14.43 -3.03 -0.04 -20.14 16 22 N -0.61 -16.26 3.01 -816.61 -2.46 -18.72 16 23 C 0.08 1.91 6.51 86.50 0.56 2.47 16 24 C 0.04 1.18 7.00 72.22 0.51 1.69 16 25 O -0.39 -11.85 10.74 -148.98 -1.60 -13.45 16 26 C 0.05 1.21 6.98 72.07 0.50 1.71 16 27 C 0.08 1.98 6.63 86.34 0.57 2.56 16 28 C -0.07 -1.62 5.87 30.75 0.18 -1.43 16 29 C 0.07 2.25 5.11 86.41 0.44 2.69 16 30 H 0.06 2.26 7.53 -2.38 -0.02 2.24 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.02 1.17 6.15 -2.39 -0.01 1.15 16 34 H 0.06 3.21 6.02 -2.39 -0.01 3.20 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.05 2.05 5.88 -2.39 -0.01 2.03 16 37 H 0.01 0.33 6.41 -2.39 -0.02 0.31 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.93 5.95 -2.38 -0.01 1.91 16 40 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.25 7.67 -2.39 -0.02 2.23 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.11 2.28 5.77 -2.39 -0.01 2.26 16 44 H 0.04 1.37 6.23 -2.39 -0.01 1.36 16 45 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 48 H 0.09 2.39 7.08 -2.39 -0.02 2.38 16 49 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 50 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 53 H 0.02 0.70 7.14 -2.39 -0.02 0.69 16 Total: -1.00 -63.73 391.15 1.35 -62.38 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.90 Total: 26.36 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.62 Total: -5.83 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -5.55 Total: -93.66 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.64 Total: -33.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -63.73 1.35 -62.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172350.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.980 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds