Wall clock time and date at job start Tue Mar 31 2020 20:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 H 1.08999 * 109.47114 * 54.99947 * 3 2 1 5 5 C 1.52996 * 109.47385 * 174.99925 * 3 2 1 6 6 N 1.46499 * 109.46953 * 294.99820 * 3 2 1 7 7 C 1.46955 * 124.35276 * 120.00125 * 6 3 2 8 8 C 1.53682 * 105.32775 * 163.67102 * 7 6 3 9 9 C 1.53855 * 102.59811 * 24.57550 * 8 7 6 10 10 C 1.34506 * 124.35556 * 299.97481 * 6 3 2 11 11 O 1.21290 * 124.94527 * 0.37017 * 10 6 3 12 12 C 1.52257 * 110.87572 * 142.83241 * 8 7 6 13 13 C 1.53217 * 109.37408 * 176.00187 * 12 8 7 14 14 C 1.53048 * 109.45008 * 300.13103 * 13 12 8 15 15 C 1.52777 * 109.56358 * 61.83220 * 14 13 12 16 16 N 1.45962 * 110.84610 * 266.34939 * 8 7 6 17 17 C 1.34770 * 120.64526 * 5.19098 * 16 8 7 18 18 O 1.21283 * 120.00175 * 4.49073 * 17 16 8 19 19 C 1.50705 * 120.00474 * 184.49466 * 17 16 8 20 20 C 1.52993 * 109.47224 * 179.97438 * 19 17 16 21 21 C 1.50710 * 109.46895 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99717 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99815 * 179.72265 * 21 20 19 24 24 N 1.31518 * 120.00360 * 0.28433 * 23 21 20 25 25 Si 1.86800 * 119.99782 * 180.27765 * 23 21 20 26 26 H 1.48491 * 109.46984 * 90.00664 * 25 23 21 27 27 H 1.48502 * 109.47003 * 210.00431 * 25 23 21 28 28 H 1.48495 * 109.47192 * 330.00186 * 25 23 21 29 29 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.00296 * 1 2 3 31 31 H 1.09003 * 109.46973 * 59.99982 * 1 2 3 32 32 H 1.08999 * 109.47082 * 239.99704 * 2 1 3 33 33 H 1.09003 * 109.46973 * 120.00018 * 2 1 3 34 34 H 1.09007 * 109.47161 * 59.99655 * 5 3 2 35 35 H 1.08997 * 109.47306 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47120 * 299.99950 * 5 3 2 37 37 H 1.09001 * 110.27595 * 44.70470 * 7 6 3 38 38 H 1.09001 * 110.35376 * 282.67932 * 7 6 3 39 39 H 1.08999 * 110.51904 * 94.64696 * 9 8 7 40 40 H 1.09007 * 110.51471 * 217.37174 * 9 8 7 41 41 H 1.09004 * 109.48973 * 295.96717 * 12 8 7 42 42 H 1.09003 * 109.48896 * 56.01098 * 12 8 7 43 43 H 1.08998 * 109.47212 * 60.12413 * 13 12 8 44 44 H 1.09000 * 109.47034 * 180.14150 * 13 12 8 45 45 H 1.09003 * 109.46454 * 181.95751 * 14 13 12 46 46 H 1.08994 * 109.47518 * 301.95342 * 14 13 12 47 47 H 1.09001 * 109.54106 * 185.11189 * 15 14 13 48 48 H 1.08999 * 109.45367 * 64.73837 * 15 14 13 49 49 H 1.09000 * 109.46378 * 59.99800 * 19 17 16 50 50 H 1.08996 * 109.46850 * 300.00383 * 19 17 16 51 51 H 1.09000 * 109.47280 * 60.00752 * 20 19 17 52 52 H 1.09003 * 109.47697 * 299.99816 * 20 19 17 53 53 H 0.97001 * 120.00406 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 0.8067 3.2963 -1.3332 8 6 1.0161 3.8457 -2.7531 9 6 1.4526 2.5951 -3.5358 10 6 2.0257 1.6790 -2.4745 11 8 2.7202 0.7094 -2.6951 12 6 -0.2830 4.4069 -3.3148 13 6 -0.0147 5.0337 -4.6869 14 6 1.0115 6.1598 -4.5409 15 6 2.3285 5.5873 -4.0195 16 7 2.0679 4.8577 -2.7686 17 6 2.7828 5.1225 -1.6573 18 8 2.6115 4.4624 -0.6543 19 6 3.7952 6.2389 -1.6606 20 6 4.4614 6.3274 -0.2862 21 6 5.4742 7.4434 -0.2899 22 1 5.6270 8.0310 -1.1830 23 6 6.2012 7.7183 0.8490 24 7 6.0148 7.0030 1.9368 25 14 7.4510 9.1066 0.8468 26 1 6.7894 10.3687 1.2642 27 1 8.5485 8.7861 1.7944 28 1 8.0086 9.2684 -0.5200 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9995 0.9051 -0.7161 35 1 3.9282 2.4719 0.1262 36 1 3.8532 0.9569 1.0571 37 1 1.1220 4.0320 -0.5932 38 1 -0.2400 3.0329 -1.1806 39 1 0.5947 2.1289 -4.0203 40 1 2.2152 2.8516 -4.2713 41 1 -1.0117 3.6029 -3.4186 42 1 -0.6737 5.1666 -2.6378 43 1 0.3742 4.2732 -5.3640 44 1 -0.9433 5.4382 -5.0894 45 1 1.1766 6.6287 -5.5110 46 1 0.6375 6.9032 -3.8370 47 1 3.0295 6.4001 -3.8296 48 1 2.7467 4.9058 -4.7603 49 1 3.2955 7.1817 -1.8832 50 1 4.5519 6.0407 -2.4196 51 1 4.9610 5.3847 -0.0632 52 1 3.7043 6.5258 0.4725 53 1 6.5260 7.1966 2.7381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:58 Heat of formation + Delta-G solvation = -76.527618 kcal Electronic energy + Delta-G solvation = -32186.160432 eV Core-core repulsion = 28250.335738 eV Total energy + Delta-G solvation = -3935.824694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.63327 -40.42497 -38.65314 -37.40257 -36.03213 -35.41471 -33.96724 -32.79795 -32.24279 -30.81580 -29.47126 -28.12684 -27.07000 -25.32310 -24.62623 -24.09821 -23.10443 -22.29545 -21.34490 -20.10743 -19.21969 -18.69116 -17.83468 -17.63555 -17.45508 -16.61667 -16.49839 -16.22928 -15.91800 -15.58991 -15.17875 -15.00277 -14.87531 -14.78561 -14.53144 -14.47421 -14.27667 -14.19825 -13.90914 -13.82801 -13.50245 -13.29001 -13.12440 -12.97391 -12.89839 -12.80468 -12.73226 -12.47456 -12.31759 -12.12882 -11.96442 -11.90757 -11.84922 -11.78883 -11.56669 -11.44639 -11.41821 -11.23112 -10.61925 -10.56217 -10.07510 -9.62660 -9.13951 -8.18292 -6.31527 1.40729 1.42844 1.53489 1.59141 1.72044 1.98177 2.18230 2.42105 3.15086 3.28282 3.36353 3.75078 3.81773 3.88185 3.99721 4.04863 4.10513 4.15501 4.20939 4.30027 4.41003 4.45043 4.48023 4.51933 4.56764 4.58205 4.60748 4.66869 4.72185 4.73159 4.83228 4.95506 4.96327 5.02605 5.03442 5.05493 5.09992 5.15550 5.16953 5.24631 5.27528 5.31508 5.33113 5.49523 5.54791 5.65612 5.74182 5.83494 5.87640 6.18818 6.35171 6.43206 6.87126 7.26227 7.34400 7.39105 8.93741 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.004101 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.732879 B = 6826.778935 C = 8676.442875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.165 3.835 4 H 0.086 0.914 5 C -0.155 4.155 6 N -0.583 5.583 7 C 0.060 3.940 8 C 0.168 3.832 9 C -0.153 4.153 10 C 0.501 3.499 11 O -0.586 6.586 12 C -0.108 4.108 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.097 3.903 16 N -0.600 5.600 17 C 0.510 3.490 18 O -0.544 6.544 19 C -0.118 4.118 20 C 0.052 3.948 21 C -0.543 4.543 22 H 0.071 0.929 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.287 1.287 28 H -0.258 1.258 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.088 0.912 51 H -0.023 1.023 52 H -0.013 1.013 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 -5.773 -14.695 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.062 3.938 4 H 0.104 0.896 5 C -0.213 4.213 6 N -0.313 5.313 7 C -0.061 4.061 8 C 0.082 3.918 9 C -0.194 4.194 10 C 0.290 3.710 11 O -0.468 6.468 12 C -0.147 4.147 13 C -0.152 4.152 14 C -0.168 4.168 15 C -0.024 4.024 16 N -0.333 5.333 17 C 0.301 3.699 18 O -0.423 6.423 19 C -0.157 4.157 20 C 0.014 3.986 21 C -0.581 4.581 22 H 0.089 0.911 23 C -0.200 4.200 24 N -0.574 5.574 25 Si 0.792 3.208 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.182 1.182 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.106 0.894 51 H -0.004 1.004 52 H 0.005 0.995 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.535 -6.648 -14.029 23.419 hybrid contribution 1.317 0.480 0.739 1.585 sum -16.218 -6.168 -13.289 21.856 Atomic orbital electron populations 1.21647 0.93910 1.02093 1.01843 1.21884 0.97677 0.95019 1.02556 1.20854 0.93824 0.93451 0.85658 0.89624 1.22015 0.96789 1.00914 1.01623 1.48186 1.49459 1.28271 1.05386 1.23411 0.94053 0.88970 0.99695 1.20821 0.89348 0.86943 0.94713 1.22761 1.04117 0.95208 0.97266 1.21459 0.79318 0.84686 0.85551 1.90626 1.40734 1.30731 1.84691 1.21732 0.93212 1.01766 0.97946 1.21559 0.99995 0.97919 0.95769 1.21826 0.94080 0.98430 1.02453 1.22007 0.99441 0.96576 0.84415 1.47897 1.35156 1.39029 1.11238 1.21203 0.81538 0.84735 0.82469 1.90403 1.65150 1.51307 1.35469 1.21640 0.96797 0.96866 1.00424 1.18592 0.93889 0.94684 0.91412 1.21706 1.21477 1.16740 0.98179 0.91068 1.26042 0.99514 0.99294 0.95157 1.70162 1.42715 1.41715 1.02855 0.85414 0.78093 0.78834 0.78502 1.19534 1.21338 1.18174 0.91723 0.91958 0.93284 0.92785 0.90084 0.93801 0.94675 0.90831 0.85481 0.89970 0.84450 0.88043 0.88181 0.90978 0.90681 0.89417 0.88442 0.91898 0.89181 0.90338 0.88247 0.89351 1.00430 0.99485 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 71.98 0.71 -2.13 16 2 C -0.13 -3.49 5.36 30.59 0.16 -3.33 16 3 C 0.16 5.15 2.71 44.99 0.12 5.27 16 4 H 0.09 2.64 8.07 -2.39 -0.02 2.62 16 5 C -0.16 -5.74 9.20 71.98 0.66 -5.08 16 6 N -0.58 -17.60 1.60 -794.76 -1.27 -18.88 16 7 C 0.06 1.55 5.53 86.52 0.48 2.03 16 8 C 0.17 3.48 0.87 3.98 0.00 3.48 16 9 C -0.15 -3.29 5.40 30.38 0.16 -3.12 16 10 C 0.50 15.90 7.41 87.94 0.65 16.56 16 11 O -0.59 -23.06 15.07 -3.06 -0.05 -23.11 16 12 C -0.11 -1.37 4.68 30.42 0.14 -1.23 16 13 C -0.12 -1.07 5.79 30.68 0.18 -0.89 16 14 C -0.13 -1.53 6.04 30.54 0.18 -1.35 16 15 C 0.10 1.72 6.06 86.18 0.52 2.24 16 16 N -0.60 -14.95 2.69 -773.31 -2.08 -17.04 16 17 C 0.51 18.15 7.54 87.66 0.66 18.81 16 18 O -0.54 -22.81 10.17 -3.04 -0.03 -22.84 16 19 C -0.12 -4.59 3.99 29.85 0.12 -4.47 16 20 C 0.05 2.81 4.26 29.85 0.13 2.94 16 21 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 22 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 23 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 24 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 25 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.03 7.75 -2.39 -0.02 1.01 16 32 H 0.05 1.68 6.63 -2.39 -0.02 1.66 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.74 6.80 -2.38 -0.02 1.73 16 35 H 0.03 1.54 7.25 -2.39 -0.02 1.53 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.13 4.24 4.55 -91.57 -0.42 3.82 16 38 H 0.08 1.65 7.86 -2.39 -0.02 1.63 16 39 H 0.14 2.06 7.74 -2.39 -0.02 2.04 16 40 H 0.10 2.19 7.16 -2.38 -0.02 2.18 16 41 H 0.10 0.86 7.95 -2.38 -0.02 0.85 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 0.62 7.64 -2.39 -0.02 0.60 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 1.69 5.95 -2.39 -0.01 1.68 16 48 H 0.08 1.22 7.44 -2.39 -0.02 1.21 16 49 H 0.10 3.43 7.84 -2.39 -0.02 3.41 16 50 H 0.09 3.23 7.80 -2.39 -0.02 3.21 16 51 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 52 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 53 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.20 398.71 4.93 -73.28 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.47 Total: 21.15 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.58 Total: -0.31 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -3.07 Total: -94.35 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.08 Total: -45.95 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -78.20 4.93 -73.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.251 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds