Wall clock time and date at job start Tue Mar 31 2020 20:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46752 * 2 1 4 4 H 1.08997 * 109.47160 * 305.00038 * 3 2 1 5 5 C 1.53004 * 109.46836 * 185.00417 * 3 2 1 6 6 N 1.46494 * 109.47061 * 65.00882 * 3 2 1 7 7 C 1.46956 * 124.34981 * 239.97893 * 6 3 2 8 8 C 1.53678 * 105.32590 * 196.33522 * 7 6 3 9 9 C 1.54029 * 102.52237 * 335.20726 * 8 7 6 10 10 C 1.34518 * 124.35537 * 60.01818 * 6 3 2 11 11 O 1.21273 * 124.94129 * 359.60591 * 10 6 3 12 12 C 1.52268 * 110.87835 * 217.17753 * 8 7 6 13 13 C 1.53207 * 109.37493 * 183.99701 * 12 8 7 14 14 C 1.53043 * 109.45677 * 59.86599 * 13 12 8 15 15 C 1.53200 * 109.49035 * 298.04867 * 14 13 12 16 16 N 1.45959 * 110.85081 * 93.65503 * 8 7 6 17 17 C 1.34777 * 120.64125 * 354.79078 * 16 8 7 18 18 O 1.21273 * 120.00020 * 351.96332 * 17 16 8 19 19 C 1.50702 * 120.00002 * 171.95973 * 17 16 8 20 20 C 1.52998 * 109.47299 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.47339 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99720 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00083 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99847 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46720 * 90.00339 * 25 23 21 27 27 H 1.48497 * 109.46859 * 209.99925 * 25 23 21 28 28 H 1.48500 * 109.47390 * 330.00313 * 25 23 21 29 29 H 1.08998 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46901 * 299.99151 * 1 2 3 31 31 H 1.09000 * 109.47796 * 59.99679 * 1 2 3 32 32 H 1.09006 * 109.46465 * 240.00538 * 2 1 3 33 33 H 1.09000 * 109.47344 * 120.00602 * 2 1 3 34 34 H 1.09000 * 109.47138 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47117 * 300.00041 * 5 3 2 36 36 H 1.09001 * 109.47355 * 59.99940 * 5 3 2 37 37 H 1.09004 * 110.27444 * 315.30276 * 7 6 3 38 38 H 1.09006 * 110.27509 * 77.28271 * 7 6 3 39 39 H 1.09002 * 110.66628 * 265.68063 * 9 8 7 40 40 H 1.09000 * 110.44862 * 142.90318 * 9 8 7 41 41 H 1.09000 * 109.48582 * 303.96623 * 12 8 7 42 42 H 1.09003 * 109.48565 * 64.00017 * 12 8 7 43 43 H 1.08998 * 109.47475 * 179.86469 * 13 12 8 44 44 H 1.09008 * 109.46903 * 299.87168 * 13 12 8 45 45 H 1.08996 * 109.46856 * 58.04879 * 14 13 12 46 46 H 1.08996 * 109.46921 * 178.04099 * 14 13 12 47 47 H 1.09001 * 109.61235 * 175.01752 * 15 14 13 48 48 H 1.09002 * 109.60941 * 295.35602 * 15 14 13 49 49 H 1.08998 * 109.47440 * 300.00526 * 19 17 16 50 50 H 1.09005 * 109.46754 * 59.99727 * 19 17 16 51 51 H 1.09003 * 109.46851 * 300.00295 * 20 19 17 52 52 H 1.08999 * 109.46920 * 60.00389 * 20 19 17 53 53 H 0.97002 * 120.00124 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 1.6525 2.0974 1.2519 7 6 0.8068 3.2965 1.3332 8 6 1.0164 3.8457 2.7531 9 6 1.4476 2.5914 3.5362 10 6 2.0257 1.6789 2.4746 11 8 2.7198 0.7092 2.6950 12 6 -0.2827 4.4070 3.3151 13 6 -0.0142 5.0336 4.6871 14 6 1.0120 6.1596 4.5413 15 6 2.3328 5.5833 4.0211 16 7 2.0683 4.8576 2.7687 17 6 2.7834 5.1221 1.6574 18 8 2.6589 4.4218 0.6752 19 6 3.7377 6.2883 1.6353 20 6 4.4177 6.3651 0.2669 21 6 5.3724 7.5309 0.2450 22 1 5.4835 8.1543 1.1198 23 6 6.1041 7.8015 -0.8919 24 7 5.9685 7.0425 -1.9573 25 14 7.2871 9.2469 -0.9192 26 1 8.6274 8.7983 -0.4635 27 1 7.3868 9.7788 -2.3020 28 1 6.7875 10.3127 -0.0137 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9281 2.4720 -0.1254 35 1 3.9995 0.9053 0.7160 36 1 3.8531 0.9571 -1.0572 37 1 1.1223 4.0321 0.5932 38 1 -0.2394 3.0319 1.1797 39 1 0.5881 2.1229 4.0157 40 1 2.2068 2.8463 4.2756 41 1 -0.6732 5.1671 2.6384 42 1 -1.0115 3.6031 3.4184 43 1 -0.9427 5.4381 5.0899 44 1 0.3747 4.2729 5.3641 45 1 0.6380 6.9031 3.8375 46 1 1.1772 6.6284 5.5113 47 1 3.0366 6.3940 3.8326 48 1 2.7507 4.9008 4.7611 49 1 3.1882 7.2111 1.8207 50 1 4.4936 6.1539 2.4092 51 1 4.9673 5.4422 0.0820 52 1 3.6621 6.4993 -0.5072 53 1 6.4830 7.2331 -2.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:06 Heat of formation + Delta-G solvation = -78.318204 kcal Electronic energy + Delta-G solvation = -32182.850247 eV Core-core repulsion = 28246.947908 eV Total energy + Delta-G solvation = -3935.902339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61588 -40.41625 -38.63811 -37.40184 -36.01523 -35.41373 -33.95235 -32.79363 -32.23068 -30.80446 -29.47206 -28.10903 -27.07179 -25.32284 -24.62592 -24.09656 -23.10006 -22.28937 -21.33039 -20.07592 -19.22374 -18.69164 -17.81333 -17.62646 -17.46157 -16.62109 -16.49784 -16.22503 -15.92539 -15.57782 -15.16679 -14.98663 -14.87178 -14.79712 -14.52108 -14.47415 -14.26388 -14.20230 -13.92163 -13.81024 -13.49144 -13.27874 -13.11845 -12.96949 -12.90520 -12.80665 -12.71888 -12.46137 -12.31339 -12.12770 -11.95977 -11.90563 -11.84044 -11.78591 -11.56448 -11.43996 -11.41446 -11.22932 -10.61469 -10.56527 -10.09604 -9.63017 -9.17905 -8.18383 -6.31610 1.40772 1.42714 1.53474 1.59980 1.72361 1.98878 2.18280 2.42075 3.15044 3.27724 3.36343 3.75017 3.81984 3.89284 4.00371 4.05112 4.10635 4.15594 4.21475 4.29657 4.41244 4.45702 4.48319 4.52122 4.57125 4.58475 4.60506 4.67050 4.72273 4.73426 4.83251 4.95177 4.96593 5.02779 5.03817 5.05096 5.09153 5.15657 5.17422 5.25517 5.27569 5.31739 5.33251 5.49421 5.55253 5.65508 5.74685 5.82968 5.87149 6.18800 6.35165 6.43592 6.87048 7.26584 7.33955 7.38956 8.93683 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.004088 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.316480 B = 6848.188058 C = 8698.503688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.165 3.835 4 H 0.085 0.915 5 C -0.155 4.155 6 N -0.582 5.582 7 C 0.069 3.931 8 C 0.168 3.832 9 C -0.153 4.153 10 C 0.501 3.499 11 O -0.586 6.586 12 C -0.108 4.108 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.508 3.492 18 O -0.543 6.543 19 C -0.117 4.117 20 C 0.052 3.948 21 C -0.543 4.543 22 H 0.071 0.929 23 C -0.002 4.002 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.255 1.255 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.089 0.911 51 H -0.023 1.023 52 H -0.014 1.014 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 -5.856 14.726 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.103 0.897 5 C -0.213 4.213 6 N -0.312 5.312 7 C -0.052 4.052 8 C 0.082 3.918 9 C -0.194 4.194 10 C 0.290 3.710 11 O -0.468 6.468 12 C -0.146 4.146 13 C -0.152 4.152 14 C -0.167 4.167 15 C -0.024 4.024 16 N -0.335 5.335 17 C 0.299 3.701 18 O -0.422 6.422 19 C -0.157 4.157 20 C 0.014 3.986 21 C -0.581 4.581 22 H 0.089 0.911 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.792 3.208 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.179 1.179 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.107 0.893 51 H -0.005 1.005 52 H 0.005 0.995 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.579 -6.749 14.063 23.502 hybrid contribution 1.356 0.493 -0.756 1.629 sum -16.223 -6.256 13.307 21.895 Atomic orbital electron populations 1.21648 0.93889 1.02101 1.01857 1.21886 0.97693 0.95021 1.02542 1.20845 0.93825 0.93419 0.85644 0.89668 1.22017 0.96814 1.00972 1.01537 1.48175 1.49441 1.28218 1.05402 1.23204 0.94067 0.88696 0.99271 1.20839 0.89379 0.86992 0.94610 1.22797 1.04102 0.95214 0.97247 1.21451 0.79310 0.84648 0.85547 1.90621 1.40793 1.30692 1.84694 1.21734 0.93183 1.01785 0.97946 1.21555 0.99983 0.97918 0.95779 1.21894 0.94028 0.98404 1.02424 1.22078 0.99379 0.96587 0.84355 1.47892 1.35188 1.39243 1.11144 1.21189 0.80907 0.85750 0.82277 1.90474 1.64294 1.50546 1.36902 1.21634 0.97454 0.96214 1.00380 1.18591 0.93820 0.94707 0.91457 1.21706 1.23599 1.13498 0.99292 0.91051 1.26046 0.99105 0.99672 0.95197 1.70161 1.42598 1.40771 1.03930 0.85415 0.78767 0.79131 0.77527 1.20057 1.21116 1.17857 0.91730 0.93243 0.91959 0.90112 0.92787 0.94569 0.93866 0.90898 0.86457 0.89728 0.84385 0.88104 0.90957 0.88125 0.89416 0.90704 0.91850 0.88536 0.89244 0.90373 0.88303 0.89323 1.00474 0.99513 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 71.98 0.71 -2.12 16 2 C -0.13 -3.49 5.36 30.59 0.16 -3.33 16 3 C 0.17 5.17 2.65 44.99 0.12 5.29 16 4 H 0.09 2.63 8.07 -2.39 -0.02 2.61 16 5 C -0.16 -5.75 9.20 71.98 0.66 -5.09 16 6 N -0.58 -17.55 1.52 -794.75 -1.21 -18.76 16 7 C 0.07 1.78 5.52 86.52 0.48 2.25 16 8 C 0.17 3.47 0.87 4.04 0.00 3.47 16 9 C -0.15 -3.28 5.41 30.44 0.16 -3.11 16 10 C 0.50 15.91 7.40 87.94 0.65 16.56 16 11 O -0.59 -23.08 15.07 -3.01 -0.05 -23.13 16 12 C -0.11 -1.35 4.68 30.42 0.14 -1.21 16 13 C -0.11 -1.06 5.79 30.68 0.18 -0.89 16 14 C -0.13 -1.53 6.05 30.68 0.19 -1.34 16 15 C 0.10 1.73 6.10 86.32 0.53 2.26 16 16 N -0.60 -14.99 2.70 -772.19 -2.08 -17.07 16 17 C 0.51 18.12 7.47 87.66 0.65 18.77 16 18 O -0.54 -22.86 9.95 -3.01 -0.03 -22.89 16 19 C -0.12 -4.57 4.01 29.85 0.12 -4.45 16 20 C 0.05 2.81 4.26 29.85 0.13 2.94 16 21 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 22 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 23 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 24 N -0.93 -58.77 13.29 21.45 0.28 -58.48 16 25 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.03 7.75 -2.38 -0.02 1.01 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.68 6.63 -2.39 -0.02 1.66 16 34 H 0.04 1.60 7.04 -2.39 -0.02 1.58 16 35 H 0.04 1.72 6.80 -2.38 -0.02 1.70 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.12 3.89 4.69 -80.13 -0.38 3.52 16 38 H 0.08 1.67 7.87 -2.38 -0.02 1.65 16 39 H 0.14 2.05 7.74 -2.39 -0.02 2.03 16 40 H 0.10 2.18 7.17 -2.39 -0.02 2.16 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 0.84 7.94 -2.39 -0.02 0.83 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.61 7.64 -2.38 -0.02 0.59 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 1.69 5.96 -2.39 -0.01 1.67 16 48 H 0.08 1.23 7.44 -2.39 -0.02 1.21 16 49 H 0.10 3.42 7.99 -2.39 -0.02 3.40 16 50 H 0.09 3.22 7.65 -2.38 -0.02 3.20 16 51 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 52 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 16 53 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.46 398.28 5.03 -73.43 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.51 Total: 20.76 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 5.58 Total: -0.04 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.01 Total: -94.32 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.08 Total: -46.01 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -78.46 5.03 -73.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.887 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds