Wall clock time and date at job start Tue Mar 31 2020 20:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 H 1.09001 * 109.47231 * 304.99916 * 3 2 1 5 5 C 1.53000 * 109.46859 * 185.00183 * 3 2 1 6 6 N 1.46492 * 109.47438 * 65.00030 * 3 2 1 7 7 C 1.46820 * 124.36400 * 239.99993 * 6 3 2 8 8 C 1.54568 * 105.49042 * 163.09617 * 7 6 3 9 9 C 1.54210 * 101.66589 * 25.03991 * 8 7 6 10 10 C 1.52499 * 109.96022 * 94.44139 * 9 8 7 11 11 C 1.53266 * 109.43163 * 181.74388 * 10 9 8 12 12 N 1.46924 * 108.73455 * 306.19360 * 11 10 9 13 13 C 1.34774 * 120.60856 * 234.13129 * 12 11 10 14 14 O 1.21283 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00241 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47231 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46953 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00187 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99621 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47143 * 59.99927 * 21 19 17 23 23 H 1.48495 * 109.47326 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46756 * 300.00176 * 21 19 17 25 25 C 1.46932 * 118.78892 * 54.15419 * 12 11 10 26 26 C 1.52497 * 109.96017 * 216.75559 * 9 8 7 27 27 C 1.34571 * 124.36027 * 60.03859 * 6 3 2 28 28 O 1.21276 * 125.01883 * 0.66312 * 27 6 3 29 29 H 1.09000 * 109.46993 * 59.99724 * 1 2 3 30 30 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47193 * 300.00314 * 1 2 3 32 32 H 1.08993 * 109.47030 * 240.00225 * 2 1 3 33 33 H 1.09003 * 109.47003 * 119.99735 * 2 1 3 34 34 H 1.09001 * 109.46981 * 299.99886 * 5 3 2 35 35 H 1.09004 * 109.47416 * 59.99769 * 5 3 2 36 36 H 1.08996 * 109.47338 * 179.97438 * 5 3 2 37 37 H 1.09003 * 110.23862 * 44.08893 * 7 6 3 38 38 H 1.09000 * 110.23600 * 282.10627 * 7 6 3 39 39 H 1.08993 * 110.98950 * 266.94720 * 8 7 6 40 40 H 1.09005 * 110.98955 * 143.12943 * 8 7 6 41 41 H 1.09006 * 109.47836 * 61.75635 * 10 9 8 42 42 H 1.08999 * 109.48614 * 301.73457 * 10 9 8 43 43 H 1.08998 * 109.59882 * 65.97107 * 11 10 9 44 44 H 1.09008 * 109.59366 * 186.42660 * 11 10 9 45 45 H 1.09007 * 109.46912 * 299.99918 * 15 13 12 46 46 H 1.08999 * 109.47304 * 60.00009 * 15 13 12 47 47 H 1.08993 * 109.47020 * 299.99645 * 16 15 13 48 48 H 1.08998 * 109.47161 * 60.00292 * 16 15 13 49 49 H 0.97002 * 119.99561 * 179.97438 * 20 19 17 50 50 H 1.09001 * 109.59279 * 186.07174 * 25 12 11 51 51 H 1.09004 * 109.71453 * 65.70296 * 25 12 11 52 52 H 1.09001 * 109.47556 * 298.25243 * 26 9 8 53 53 H 1.09003 * 109.47890 * 58.27100 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 1.6525 2.0976 1.2517 7 6 0.8073 3.2953 1.3332 8 6 0.3212 3.3587 2.7991 9 6 1.4329 2.5792 3.5302 10 6 2.4839 3.5475 4.0625 11 6 3.6041 2.7577 4.7483 12 7 3.0079 1.8753 5.7606 13 6 3.4331 1.9118 7.0389 14 8 4.3161 2.6777 7.3626 15 6 2.8123 1.0003 8.0659 16 6 3.4705 1.2411 9.4260 17 6 2.8492 0.3300 10.4531 18 1 2.0638 -0.3529 10.1646 19 6 3.2842 0.3675 11.7609 20 7 4.2410 1.1987 12.1121 21 14 2.5147 -0.7624 13.0340 22 1 2.7184 -2.1765 12.6285 23 1 3.1542 -0.5295 14.3537 24 1 1.0600 -0.4801 13.1314 25 6 1.9398 0.9520 5.3537 26 6 0.8316 1.7546 4.6633 27 6 2.0259 1.6793 2.4751 28 8 2.7351 0.7207 2.6964 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.9053 0.7161 35 1 3.8532 0.9570 -1.0572 36 1 3.9281 2.4720 -0.1262 37 1 -0.0430 3.2035 0.6574 38 1 1.3890 4.1845 1.0898 39 1 -0.6427 2.8627 2.9125 40 1 0.2718 4.3895 3.1499 41 1 2.0232 4.2243 4.7821 42 1 2.8992 4.1238 3.2358 43 1 4.1350 2.1587 4.0084 44 1 4.2974 3.4484 5.2284 45 1 1.7446 1.2075 8.1376 46 1 2.9618 -0.0376 7.7683 47 1 4.5382 1.0342 9.3546 48 1 3.3206 2.2790 9.7234 49 1 4.5467 1.2252 13.0323 50 1 1.5349 0.4511 6.2331 51 1 2.3389 0.2100 4.6619 52 1 0.3604 2.4200 5.3866 53 1 0.0855 1.0705 4.2588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269992204.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:01 Heat of formation + Delta-G solvation = -107.807716 kcal Electronic energy + Delta-G solvation = -30981.818715 eV Core-core repulsion = 27044.637614 eV Total energy + Delta-G solvation = -3937.181100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40619 -40.74421 -38.34212 -37.48983 -36.15650 -35.61567 -33.55618 -33.00242 -32.02358 -31.15219 -29.52665 -28.00930 -26.88033 -24.95497 -24.67305 -23.99015 -23.05986 -22.64644 -21.64656 -20.17530 -19.18344 -18.84627 -17.78918 -17.22089 -17.08769 -16.81837 -16.61531 -16.42359 -16.18780 -15.44269 -15.26173 -15.03561 -14.84540 -14.69026 -14.44012 -14.31655 -14.22678 -14.15454 -13.98828 -13.84520 -13.43164 -13.32269 -13.18647 -13.11827 -12.89178 -12.78338 -12.66821 -12.51236 -12.40492 -12.25779 -11.99006 -11.94125 -11.86946 -11.79954 -11.68434 -11.51923 -11.44108 -11.32374 -10.67417 -10.56598 -10.33725 -9.54996 -9.50822 -8.17974 -6.32576 1.41304 1.46577 1.54239 1.66994 1.67379 2.04646 2.11495 2.43308 3.14483 3.28159 3.47573 3.59571 3.81315 3.84009 3.97890 4.03313 4.08789 4.10800 4.22146 4.32167 4.41060 4.43440 4.45906 4.48742 4.52528 4.57692 4.63398 4.67799 4.71802 4.73258 4.78993 4.81570 4.87674 4.90475 4.99439 5.02936 5.07811 5.08569 5.11942 5.21566 5.25218 5.28169 5.28521 5.39760 5.46914 5.60867 5.63215 5.83531 5.83987 6.16911 6.27205 6.42743 6.85054 7.25721 7.33063 7.37547 8.94740 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.002461 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.067286 B =11373.338858 C =11697.413000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.156 3.844 4 H 0.116 0.884 5 C -0.165 4.165 6 N -0.612 5.612 7 C 0.099 3.901 8 C -0.116 4.116 9 C -0.093 4.093 10 C -0.100 4.100 11 C 0.107 3.893 12 N -0.603 5.603 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.976 3.024 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.260 1.260 25 C 0.093 3.907 26 C -0.106 4.106 27 C 0.523 3.477 28 O -0.554 6.554 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.094 0.906 47 H -0.022 1.022 48 H -0.016 1.016 49 H 0.263 0.737 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.086 0.914 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 3.983 -32.695 36.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.054 3.946 4 H 0.134 0.866 5 C -0.223 4.223 6 N -0.345 5.345 7 C -0.022 4.022 8 C -0.154 4.154 9 C -0.096 4.096 10 C -0.138 4.138 11 C -0.016 4.016 12 N -0.336 5.336 13 C 0.299 3.701 14 O -0.473 6.473 15 C -0.154 4.154 16 C 0.008 3.992 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.184 1.184 25 C -0.029 4.029 26 C -0.145 4.145 27 C 0.311 3.689 28 O -0.433 6.433 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.112 0.888 47 H -0.004 1.004 48 H 0.002 0.998 49 H 0.072 0.928 50 H 0.110 0.890 51 H 0.097 0.903 52 H 0.105 0.895 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.842 3.908 -32.394 35.443 hybrid contribution 0.669 -0.503 1.078 1.365 sum -13.173 3.405 -31.316 34.144 Atomic orbital electron populations 1.21673 0.94498 1.01678 1.02088 1.21908 0.97198 0.96309 1.02359 1.21104 0.94607 0.93379 0.85511 0.86648 1.22144 0.95758 1.02090 1.02353 1.48563 1.51037 1.29429 1.05457 1.22374 0.94926 0.86902 0.98046 1.22757 0.97177 1.02469 0.92959 1.21047 0.97477 0.96168 0.94934 1.21692 0.94790 0.96693 1.00658 1.21564 0.96609 0.93174 0.90227 1.48108 1.38372 1.39908 1.07234 1.21385 0.81922 0.83188 0.83580 1.90618 1.33386 1.42543 1.80753 1.21619 1.01511 0.98790 0.93476 1.18666 0.94102 0.95212 0.91225 1.21668 1.20667 1.21632 0.94247 0.90646 1.26164 0.95462 0.97413 1.01408 1.70181 1.29916 1.38899 1.18787 0.85350 0.78910 0.78903 0.76935 1.18841 1.21203 1.18406 1.22100 0.87607 0.92308 1.00864 1.21745 0.96920 0.99187 0.96629 1.20814 0.79391 0.83885 0.84847 1.90649 1.38800 1.29866 1.83945 0.91096 0.93137 0.93340 0.90092 0.93600 0.94276 0.90156 0.92326 0.87962 0.89846 0.88365 0.87226 0.89665 0.88789 0.92438 0.91468 0.87703 0.88770 1.00365 0.99753 0.92811 0.89047 0.90276 0.89512 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.80 71.98 0.71 -0.78 16 2 C -0.14 -1.88 5.36 30.60 0.16 -1.72 16 3 C 0.16 1.81 2.87 44.99 0.13 1.94 16 4 H 0.12 0.68 8.07 -2.39 -0.02 0.66 16 5 C -0.17 -2.41 9.20 71.98 0.66 -1.75 16 6 N -0.61 -7.85 2.29 -794.13 -1.82 -9.67 16 7 C 0.10 0.58 7.31 86.85 0.63 1.21 16 8 C -0.12 -0.82 6.20 31.54 0.20 -0.63 16 9 C -0.09 -1.48 0.55 -52.81 -0.03 -1.51 16 10 C -0.10 -1.93 4.77 30.52 0.15 -1.78 16 11 C 0.11 3.20 6.02 86.39 0.52 3.72 16 12 N -0.60 -20.27 2.96 -818.60 -2.43 -22.70 16 13 C 0.51 22.33 7.70 87.66 0.67 23.01 16 14 O -0.59 -31.70 15.39 -3.04 -0.05 -31.75 16 15 C -0.11 -5.07 3.98 29.85 0.12 -4.95 16 16 C 0.05 2.68 4.26 29.85 0.13 2.81 16 17 C -0.54 -32.15 9.11 25.60 0.23 -31.91 16 18 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 19 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 20 N -0.94 -61.08 13.29 21.45 0.28 -60.79 16 21 Si 0.98 45.34 29.54 68.60 2.03 47.37 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 C 0.09 2.46 5.91 86.38 0.51 2.98 16 26 C -0.11 -1.93 4.79 30.51 0.15 -1.79 16 27 C 0.52 10.30 5.61 87.73 0.49 10.79 16 28 O -0.55 -15.62 11.24 -3.02 -0.03 -15.66 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.56 7.75 -2.39 -0.02 0.54 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.96 6.67 -2.39 -0.02 0.95 16 34 H 0.04 0.86 6.77 -2.39 -0.02 0.84 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.10 0.50 7.88 -2.39 -0.02 0.48 16 40 H 0.11 0.48 7.87 -2.38 -0.02 0.46 16 41 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.83 6.84 -2.39 -0.02 1.81 16 44 H 0.07 2.33 7.00 -2.38 -0.02 2.31 16 45 H 0.10 4.04 7.70 -2.38 -0.02 4.02 16 46 H 0.09 3.85 7.93 -2.39 -0.02 3.83 16 47 H -0.02 -1.48 8.10 -2.39 -0.02 -1.49 16 48 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 49 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 50 H 0.09 2.34 5.92 -2.39 -0.01 2.33 16 51 H 0.08 2.33 5.87 -2.39 -0.01 2.31 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.09 1.38 8.13 -2.39 -0.02 1.36 16 Total: -1.00 -85.15 402.99 4.75 -80.40 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.87 Total: 13.13 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.89 Total: -0.33 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -3.96 Total: -93.16 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.08 Total: -47.40 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.15 4.75 -80.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269992204.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.411 kcal (2) G-P(sol) polarization free energy of solvation -85.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds