Wall clock time and date at job start Tue Mar 31 2020 20:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47693 * 2 1 4 4 H 1.09006 * 109.46846 * 54.99347 * 3 2 1 5 5 C 1.53003 * 109.47014 * 295.00200 * 3 2 1 6 6 C 1.50693 * 109.47610 * 175.00079 * 3 2 1 7 7 O 1.21289 * 119.99834 * 12.30188 * 6 3 2 8 8 N 1.34773 * 120.00266 * 192.30280 * 6 3 2 9 9 C 1.47157 * 120.64967 * 8.04618 * 8 6 3 10 10 C 1.52735 * 108.88958 * 232.07590 * 9 8 6 11 11 C 1.53039 * 109.58391 * 305.01357 * 10 9 8 12 12 C 1.53217 * 109.46935 * 61.77496 * 11 10 9 13 13 C 1.45961 * 120.65225 * 188.32182 * 8 6 3 14 14 C 1.53859 * 110.70184 * 251.92508 * 13 8 6 15 15 C 1.51446 * 104.03161 * 94.35494 * 14 13 8 16 16 O 1.21282 * 124.94134 * 195.61063 * 15 14 13 17 17 N 1.34513 * 110.11187 * 15.61393 * 15 14 13 18 18 C 1.46497 * 124.35233 * 180.37890 * 17 15 14 19 19 C 1.52992 * 109.47668 * 89.97124 * 18 17 15 20 20 C 1.50694 * 109.47557 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99851 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00017 * 180.02562 * 20 19 18 23 23 N 1.31524 * 120.00150 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00240 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47173 * 90.00155 * 24 22 20 26 26 H 1.48504 * 109.47276 * 209.99878 * 24 22 20 27 27 H 1.48496 * 109.47147 * 330.00145 * 24 22 20 28 28 C 1.46950 * 111.29424 * 0.35262 * 17 15 14 29 29 H 1.08998 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46690 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.46788 * 300.00100 * 1 2 3 32 32 H 1.08996 * 109.47104 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.46788 * 239.99900 * 2 1 3 34 34 H 1.09001 * 109.47335 * 53.81572 * 5 3 2 35 35 H 1.08994 * 109.47278 * 173.81179 * 5 3 2 36 36 H 1.09000 * 109.47104 * 293.82027 * 5 3 2 37 37 H 1.09001 * 109.60700 * 351.87852 * 9 8 6 38 38 H 1.09001 * 109.60678 * 112.38896 * 9 8 6 39 39 H 1.08992 * 109.53869 * 184.90605 * 10 9 8 40 40 H 1.09006 * 109.30455 * 64.97124 * 10 9 8 41 41 H 1.09003 * 109.47252 * 301.77991 * 11 10 9 42 42 H 1.09000 * 109.47427 * 181.77950 * 11 10 9 43 43 H 1.08992 * 109.49195 * 180.15266 * 12 11 10 44 44 H 1.08998 * 109.50584 * 60.09185 * 12 11 10 45 45 H 1.09002 * 110.51182 * 212.99143 * 14 13 8 46 46 H 1.09002 * 110.51773 * 335.57390 * 14 13 8 47 47 H 1.09004 * 109.46981 * 209.97661 * 18 17 15 48 48 H 1.09004 * 109.46987 * 329.97183 * 18 17 15 49 49 H 1.09004 * 109.47358 * 300.00306 * 19 18 17 50 50 H 1.09004 * 109.46869 * 59.99986 * 19 18 17 51 51 H 0.96994 * 120.00314 * 180.02562 * 23 22 20 52 52 H 1.09001 * 110.27125 * 224.74618 * 28 17 15 53 53 H 1.08999 * 110.27600 * 102.67467 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5420 1.4442 0.1238 7 8 4.1635 0.4126 -0.0195 8 7 4.1946 2.5921 0.3938 9 6 3.4514 3.8131 0.7437 10 6 3.9193 4.9526 -0.1593 11 6 5.4384 5.1027 -0.0504 12 6 6.1145 3.8134 -0.5279 13 6 5.6520 2.6501 0.3390 14 6 6.2457 2.7563 1.7545 15 6 6.5516 1.3221 2.1329 16 8 6.7793 0.9344 3.2592 17 7 6.5338 0.5410 1.0379 18 6 6.7811 -0.9029 1.0484 19 6 5.4583 -1.6455 1.2467 20 6 5.7125 -3.1308 1.2569 21 1 6.7173 -3.5075 1.1347 22 6 4.6625 -4.0089 1.4223 23 7 4.8844 -5.3052 1.4318 24 14 2.9245 -3.3574 1.6331 25 1 2.2801 -3.2264 0.3017 26 1 2.1408 -4.2998 2.4716 27 1 2.9708 -2.0282 2.2936 28 6 6.2340 1.3222 -0.1701 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 0.5593 2.0289 -1.4506 35 1 1.9015 3.1826 -1.2624 36 1 2.1570 1.6555 -2.1405 37 1 2.3843 3.6465 0.5970 38 1 3.6440 4.0728 1.7847 39 1 3.4395 5.8817 0.1480 40 1 3.6495 4.7285 -1.1914 41 1 5.7112 5.2931 0.9876 42 1 5.7666 5.9365 -0.6710 43 1 7.1964 3.9190 -0.4480 44 1 5.8434 3.6233 -1.5664 45 1 7.1590 3.3512 1.7419 46 1 5.5188 3.1885 2.4422 47 1 7.2271 -1.2021 0.0999 48 1 7.4616 -1.1491 1.8636 49 1 5.0122 -1.3464 2.1953 50 1 4.7777 -1.3994 0.4316 51 1 4.1457 -5.9229 1.5478 52 1 5.5013 0.7999 -0.7854 53 1 7.1459 1.5029 -0.7391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270483161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:34 Heat of formation + Delta-G solvation = -75.146238 kcal Electronic energy + Delta-G solvation = -32909.629547 eV Core-core repulsion = 28973.864754 eV Total energy + Delta-G solvation = -3935.764792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.66479 -40.43162 -38.74032 -37.35725 -36.36830 -35.47550 -33.99675 -33.82561 -31.68184 -30.49426 -29.70764 -27.93767 -26.80014 -25.93722 -25.01965 -23.57509 -22.92681 -22.41687 -21.04899 -20.16352 -19.54468 -18.96568 -18.11313 -17.68872 -17.30019 -16.69930 -16.52539 -16.33614 -16.14174 -15.79876 -15.32387 -15.20365 -14.87323 -14.83572 -14.66953 -14.56050 -14.32620 -14.06646 -13.92071 -13.78546 -13.51240 -13.45435 -13.08601 -12.98161 -12.94076 -12.82041 -12.61482 -12.43185 -12.29499 -12.15920 -12.02264 -11.81752 -11.79377 -11.72424 -11.55946 -11.45683 -11.40592 -11.35195 -10.82552 -10.80675 -10.11262 -9.64649 -9.18157 -8.37692 -6.39395 1.20781 1.24316 1.39564 1.55900 1.68787 1.94178 2.23528 2.28249 2.97557 3.21879 3.35278 3.63543 3.74015 3.79576 3.94497 3.98695 4.08291 4.20302 4.22747 4.29660 4.37675 4.41836 4.47444 4.48880 4.53627 4.58646 4.65205 4.67812 4.70776 4.79032 4.84376 4.89819 4.96395 5.01618 5.04551 5.07611 5.08321 5.15420 5.18138 5.20104 5.28031 5.33051 5.36772 5.43839 5.47181 5.54019 5.58927 5.73796 5.83587 6.19493 6.38376 6.45287 6.64743 7.20617 7.25395 7.38666 8.78795 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.005702 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.873198 B = 4909.249514 C = 6765.984961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.102 4.102 4 H 0.111 0.889 5 C -0.134 4.134 6 C 0.494 3.506 7 O -0.538 6.538 8 N -0.599 5.599 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.173 3.827 14 C -0.145 4.145 15 C 0.488 3.512 16 O -0.604 6.604 17 N -0.591 5.591 18 C 0.153 3.847 19 C 0.000 4.000 20 C -0.531 4.531 21 H 0.036 0.964 22 C 0.013 3.987 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.256 1.256 26 H -0.282 1.282 27 H -0.271 1.271 28 C 0.066 3.934 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.137 0.863 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.041 0.959 49 H -0.024 1.024 50 H 0.055 0.945 51 H 0.267 0.733 52 H 0.127 0.873 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 31.566 -9.700 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.123 4.123 4 H 0.129 0.871 5 C -0.191 4.191 6 C 0.284 3.716 7 O -0.416 6.416 8 N -0.332 5.332 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.155 4.155 12 C -0.144 4.144 13 C 0.087 3.913 14 C -0.186 4.186 15 C 0.277 3.723 16 O -0.487 6.487 17 N -0.321 5.321 18 C 0.031 3.969 19 C -0.039 4.039 20 C -0.569 4.569 21 H 0.055 0.945 22 C -0.184 4.184 23 N -0.587 5.587 24 Si 0.776 3.224 25 H -0.180 1.180 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.055 4.055 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.155 0.845 46 H 0.125 0.875 47 H 0.095 0.905 48 H 0.059 0.941 49 H -0.005 1.005 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.144 0.856 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.119 30.575 -9.228 32.953 hybrid contribution -0.183 -1.298 0.784 1.528 sum -8.301 29.277 -8.444 31.581 Atomic orbital electron populations 1.21816 0.93037 1.01958 1.03532 1.21433 0.97616 0.95664 1.00857 1.21361 0.90301 0.97842 1.02816 0.87123 1.21825 1.03123 1.00845 0.93302 1.21453 0.91404 0.82862 0.75839 1.90641 1.67800 1.33001 1.50202 1.47851 1.05347 1.10867 1.69130 1.22118 0.97362 0.83314 0.99825 1.21824 0.96396 0.98069 1.00268 1.21570 0.94986 0.96424 1.02509 1.21712 1.01707 0.92233 0.98733 1.20768 0.80504 0.95998 0.94043 1.22733 1.04806 0.92218 0.98796 1.21883 0.75867 0.90690 0.83812 1.90648 1.53525 1.80806 1.23683 1.48348 1.67220 1.07493 1.09046 1.21001 0.97345 0.78108 1.00468 1.19683 0.95533 0.92718 0.95920 1.21434 0.94617 0.91572 1.49291 0.94536 1.25820 1.03515 0.94824 0.94248 1.70048 1.33507 1.02795 1.52351 0.85690 0.79668 0.77791 0.79257 1.18015 1.20832 1.19667 1.23279 1.02017 0.91368 0.88818 0.93680 0.89686 0.91370 0.95721 0.93079 0.89514 0.89491 0.93360 0.87702 0.91055 0.88289 0.90827 0.91201 0.89401 0.88916 0.90199 0.84486 0.87508 0.90513 0.94079 1.00542 0.92718 0.92402 0.85579 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.68 71.98 0.70 -2.34 16 2 C -0.12 -3.38 4.71 30.59 0.14 -3.23 16 3 C -0.10 -2.13 1.86 -11.54 -0.02 -2.15 16 4 H 0.11 1.81 6.92 -2.38 -0.02 1.80 16 5 C -0.13 -1.74 8.81 71.98 0.63 -1.10 16 6 C 0.49 13.43 6.70 87.66 0.59 14.02 16 7 O -0.54 -20.38 7.89 -3.06 -0.02 -20.40 16 8 N -0.60 -11.73 2.69 -773.36 -2.08 -13.81 16 9 C 0.09 0.99 5.40 86.17 0.47 1.45 16 10 C -0.13 -0.65 6.04 30.52 0.18 -0.47 16 11 C -0.12 -0.71 5.79 30.68 0.18 -0.53 16 12 C -0.11 -1.13 4.68 30.43 0.14 -0.99 16 13 C 0.17 3.48 0.87 3.98 0.00 3.49 16 14 C -0.14 -3.46 5.39 30.38 0.16 -3.29 16 15 C 0.49 19.44 8.03 87.94 0.71 20.14 16 16 O -0.60 -30.59 17.59 -3.04 -0.05 -30.65 16 17 N -0.59 -23.54 2.30 -818.76 -1.88 -25.43 16 18 C 0.15 7.49 5.85 86.38 0.51 8.00 16 19 C 0.00 -0.03 3.65 29.84 0.11 0.08 16 20 C -0.53 -34.63 9.66 25.60 0.25 -34.39 16 21 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 22 C 0.01 0.84 5.47 84.65 0.46 1.30 16 23 N -0.95 -63.83 13.96 21.45 0.30 -63.53 16 24 Si 0.95 51.25 26.64 68.60 1.83 53.07 16 25 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 27 H -0.27 -14.83 6.35 99.48 0.63 -14.20 16 28 C 0.07 1.91 5.57 86.52 0.48 2.40 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.27 6.44 -2.38 -0.02 1.26 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.02 0.92 7.06 -2.39 -0.02 0.90 16 33 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 34 H 0.09 0.86 6.30 -2.39 -0.02 0.84 16 35 H 0.09 0.67 6.35 -2.39 -0.02 0.66 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.79 4.74 -2.39 -0.01 0.78 16 38 H 0.07 0.74 7.43 -2.39 -0.02 0.73 16 39 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.07 0.37 7.90 -2.38 -0.02 0.36 16 41 H 0.07 0.44 7.64 -2.39 -0.02 0.42 16 42 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.09 0.82 7.95 -2.39 -0.02 0.80 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.14 2.41 7.74 -2.39 -0.02 2.39 16 46 H 0.11 2.38 7.15 -2.39 -0.02 2.36 16 47 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 48 H 0.04 2.18 7.93 -2.38 -0.02 2.16 16 49 H -0.02 -1.50 7.20 -2.38 -0.02 -1.52 16 50 H 0.05 3.07 4.83 -2.38 -0.01 3.06 16 51 H 0.27 16.72 8.31 -92.71 -0.77 15.94 16 52 H 0.13 4.25 4.69 -79.46 -0.37 3.87 16 53 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 Total: -1.00 -92.33 387.32 4.23 -88.10 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.46 Total: 10.26 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.69 Total: 2.38 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.67 Total: -102.77 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.08 Total: -51.05 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 1.83 Total: 53.07 kcal Total: -92.33 4.23 -88.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270483161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.955 kcal (2) G-P(sol) polarization free energy of solvation -92.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds