Wall clock time and date at job start Tue Mar 31 2020 20:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 H 1.09005 * 109.47141 * 55.00432 * 3 2 1 5 5 C 1.53008 * 109.47136 * 174.99717 * 3 2 1 6 6 N 1.46493 * 109.47623 * 295.00089 * 3 2 1 7 7 C 1.33967 * 122.78470 * 299.97810 * 6 3 2 8 8 O 1.21233 * 125.40634 * 359.97438 * 7 6 3 9 9 C 1.51449 * 109.17875 * 180.26123 * 7 6 3 10 10 C 1.53742 * 103.35747 * 359.62889 * 9 7 6 11 11 C 1.52524 * 110.49494 * 241.56875 * 10 9 7 12 12 C 1.53229 * 109.19576 * 181.45107 * 11 10 9 13 13 C 1.53056 * 109.20783 * 56.77769 * 12 11 10 14 14 N 1.46847 * 109.61182 * 300.36031 * 13 12 11 15 15 C 1.46906 * 110.99748 * 186.23269 * 14 13 12 16 16 C 1.52996 * 109.47187 * 293.95820 * 15 14 13 17 17 C 1.53000 * 109.46979 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47201 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00153 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99750 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47124 * 60.00133 * 22 20 18 24 24 H 1.48504 * 109.46783 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47190 * 299.99877 * 22 20 18 26 26 C 1.46961 * 111.15455 * 62.17538 * 14 13 12 27 27 C 1.34057 * 122.78837 * 119.99615 * 6 3 2 28 28 O 1.21230 * 125.50114 * 0.02562 * 27 6 3 29 29 H 1.09004 * 109.47014 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.46961 * 59.99990 * 1 2 3 31 31 H 1.08995 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47291 * 240.00623 * 2 1 3 33 33 H 1.08995 * 109.47099 * 120.00198 * 2 1 3 34 34 H 1.09001 * 109.47142 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.47019 * 300.00998 * 5 3 2 36 36 H 1.09005 * 109.46522 * 60.00336 * 5 3 2 37 37 H 1.08999 * 110.63973 * 118.22312 * 9 7 6 38 38 H 1.08995 * 110.64030 * 241.28675 * 9 7 6 39 39 H 1.08992 * 109.51940 * 301.36849 * 11 10 9 40 40 H 1.08997 * 109.51553 * 61.54171 * 11 10 9 41 41 H 1.08995 * 109.51798 * 176.69866 * 12 11 10 42 42 H 1.09003 * 109.51922 * 296.86063 * 12 11 10 43 43 H 1.09002 * 109.44128 * 60.40161 * 13 12 11 44 44 H 1.08999 * 109.44815 * 180.31312 * 13 12 11 45 45 H 1.09002 * 109.46426 * 53.95542 * 15 14 13 46 46 H 1.08992 * 109.47165 * 173.95251 * 15 14 13 47 47 H 1.09002 * 109.47154 * 299.99795 * 16 15 14 48 48 H 1.08992 * 109.47533 * 59.99656 * 16 15 14 49 49 H 1.08998 * 109.47090 * 299.99335 * 17 16 15 50 50 H 1.09000 * 109.47705 * 59.99483 * 17 16 15 51 51 H 0.97005 * 119.99852 * 180.02562 * 21 20 18 52 52 H 1.08994 * 109.45168 * 179.18659 * 26 14 13 53 53 H 1.08998 * 109.45241 * 59.25191 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0976 -1.2517 7 6 2.0426 1.6534 -2.4539 8 8 2.7437 0.6843 -2.6510 9 6 1.4744 2.5585 -3.5271 10 6 0.6769 3.6012 -2.7267 11 6 -0.8009 3.5447 -3.1000 12 6 -1.5605 4.6182 -2.3135 13 6 -0.9392 5.9871 -2.6008 14 7 0.4733 5.9814 -2.1992 15 6 1.0613 7.3219 -2.3235 16 6 1.1038 7.7254 -3.7987 17 6 1.7169 9.1212 -3.9281 18 6 1.7594 9.5184 -5.3812 19 1 1.3860 8.8429 -6.1368 20 6 2.2738 10.7445 -5.7461 21 7 2.7279 11.5671 -4.8260 22 14 2.3271 11.2364 -7.5473 23 1 0.9482 11.2476 -8.0984 24 1 2.9220 12.5913 -7.6730 25 1 3.1542 10.2612 -8.3025 26 6 1.2408 4.9959 -2.9733 27 6 0.8784 3.1914 -1.2892 28 8 0.4156 3.7598 -0.3236 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9282 2.4721 0.1263 35 1 3.8532 0.9569 1.0571 36 1 3.9995 0.9053 -0.7161 37 1 2.2758 3.0352 -4.0915 38 1 0.8149 2.0000 -4.1911 39 1 -0.9139 3.7279 -4.1685 40 1 -1.2013 2.5613 -2.8539 41 1 -2.6067 4.6217 -2.6193 42 1 -1.4929 4.4043 -1.2468 43 1 -1.0126 6.2024 -3.6668 44 1 -1.4733 6.7532 -2.0387 45 1 0.4547 8.0375 -1.7684 46 1 2.0736 7.3134 -1.9197 47 1 1.7103 7.0097 -4.3537 48 1 0.0915 7.7338 -4.2024 49 1 1.1107 9.8371 -3.3731 50 1 2.7293 9.1124 -3.5245 51 1 3.0896 12.4299 -5.0826 52 1 2.2854 5.0250 -2.6638 53 1 1.1703 5.2335 -4.0348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:20 Heat of formation + Delta-G solvation = -101.045855 kcal Electronic energy + Delta-G solvation = -31152.056455 eV Core-core repulsion = 27215.168571 eV Total energy + Delta-G solvation = -3936.887884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.36706 -40.38033 -39.21899 -37.33531 -36.92545 -35.67071 -34.51547 -32.80423 -32.26320 -30.99890 -28.77047 -28.23636 -25.93448 -25.58385 -24.84564 -23.72349 -23.54317 -22.78214 -21.79583 -20.67929 -19.48692 -18.49099 -18.19315 -17.66066 -17.20318 -16.61111 -16.41593 -16.24685 -15.93582 -15.62596 -15.41303 -15.29065 -15.08099 -14.92432 -14.69944 -14.52122 -14.44370 -14.29094 -13.84625 -13.70891 -13.55715 -13.49598 -13.26226 -13.13754 -12.90360 -12.76011 -12.63476 -12.48807 -12.36436 -12.33141 -12.16842 -12.10316 -12.02324 -11.57273 -11.53628 -11.35478 -11.32252 -11.23233 -10.96521 -10.73220 -10.62904 -10.54622 -9.07696 -8.19036 -6.31270 0.57506 1.39616 1.42342 1.50289 1.54240 1.76560 2.40537 2.84957 3.11090 3.13283 3.27080 3.43425 3.60167 3.69262 3.93634 3.97843 3.99915 4.12152 4.18217 4.25277 4.28763 4.37267 4.38458 4.43922 4.54094 4.58374 4.60911 4.62014 4.63490 4.77187 4.78306 4.83799 4.84757 4.87710 4.91463 4.98210 5.01531 5.07497 5.11996 5.12887 5.18944 5.24102 5.24748 5.27591 5.47142 5.50983 5.72261 5.84999 5.91072 6.11957 6.22373 6.26180 6.39567 6.85989 6.87849 7.38212 8.91701 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002602 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.258988 B =10759.032665 C =11080.302489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.119 3.881 4 H 0.097 0.903 5 C -0.162 4.162 6 N -0.571 5.571 7 C 0.531 3.469 8 O -0.507 6.507 9 C -0.146 4.146 10 C -0.084 4.084 11 C -0.097 4.097 12 C -0.118 4.118 13 C 0.052 3.948 14 N -0.534 5.534 15 C 0.067 3.933 16 C -0.124 4.124 17 C 0.028 3.972 18 C -0.542 4.542 19 H 0.060 0.940 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.069 3.931 27 C 0.540 3.460 28 O -0.479 6.479 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.052 0.948 49 H -0.012 1.012 50 H -0.011 1.011 51 H 0.263 0.737 52 H 0.069 0.931 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -25.589 6.593 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.115 0.885 5 C -0.220 4.220 6 N -0.314 5.314 7 C 0.322 3.678 8 O -0.381 6.381 9 C -0.185 4.185 10 C -0.088 4.088 11 C -0.134 4.134 12 C -0.156 4.156 13 C -0.075 4.075 14 N -0.257 5.257 15 C -0.061 4.061 16 C -0.163 4.163 17 C -0.010 4.010 18 C -0.580 4.580 19 H 0.078 0.922 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.788 3.212 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.059 4.059 27 C 0.329 3.671 28 O -0.349 6.349 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.007 0.993 50 H 0.008 0.992 51 H 0.072 0.928 52 H 0.088 0.912 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.137 -25.781 7.607 27.572 hybrid contribution 0.434 1.286 -1.246 1.843 sum -5.703 -24.495 6.361 25.942 Atomic orbital electron populations 1.21725 0.95086 1.02377 1.01335 1.21885 0.96662 0.94259 1.04166 1.21560 0.96673 0.94776 0.85197 0.88514 1.22119 0.93430 1.02343 1.04066 1.47085 1.46779 1.27998 1.09562 1.21128 0.78019 0.84086 0.84574 1.90719 1.35783 1.27173 1.84470 1.22723 1.02767 0.95681 0.97345 1.21146 0.99916 0.96206 0.91501 1.21528 0.89421 1.00324 1.02165 1.21669 0.99525 0.93098 1.01262 1.22120 0.88126 0.98587 0.98690 1.62252 1.02834 1.05285 1.55305 1.22076 0.99521 0.89290 0.95261 1.21995 1.00030 0.97422 0.96876 1.18918 0.94227 0.92555 0.95297 1.21674 1.40404 1.01836 0.94071 0.92165 1.25994 0.94938 0.96686 1.02312 1.70096 1.42459 1.09654 1.35241 0.85530 0.78856 0.77352 0.79502 1.19111 1.21029 1.19051 1.21962 0.97262 0.88968 0.97716 1.20696 0.75982 0.78107 0.92294 1.90722 1.47753 1.54729 1.41712 0.92597 0.94204 0.91135 0.91315 0.88531 0.93090 0.88836 0.91923 0.84726 0.83139 0.88169 0.89709 0.89311 0.91640 0.94300 0.91609 0.91698 0.91973 0.92553 0.92925 0.99345 0.99249 0.92822 0.91226 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.80 71.98 0.71 -1.44 16 2 C -0.13 -2.00 5.34 30.59 0.16 -1.83 16 3 C 0.12 2.17 2.70 45.00 0.12 2.29 16 4 H 0.10 1.90 7.42 -2.38 -0.02 1.88 16 5 C -0.16 -2.78 9.17 71.98 0.66 -2.12 16 6 N -0.57 -11.36 1.94 -734.29 -1.42 -12.79 16 7 C 0.53 10.17 7.41 88.02 0.65 10.82 16 8 O -0.51 -11.98 14.79 -2.88 -0.04 -12.02 16 9 C -0.15 -1.99 6.30 30.34 0.19 -1.80 16 10 C -0.08 -1.52 0.69 -52.98 -0.04 -1.56 16 11 C -0.10 -1.44 4.61 30.51 0.14 -1.30 16 12 C -0.12 -2.28 5.81 30.69 0.18 -2.11 16 13 C 0.05 1.31 5.02 86.33 0.43 1.74 16 14 N -0.53 -15.13 4.23 -897.21 -3.79 -18.93 16 15 C 0.07 2.27 5.36 86.30 0.46 2.74 16 16 C -0.12 -4.86 4.45 30.59 0.14 -4.72 16 17 C 0.03 1.45 4.97 29.85 0.15 1.60 16 18 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 21 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 22 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.07 1.63 3.39 86.11 0.29 1.92 16 27 C 0.54 12.16 6.52 87.81 0.57 12.74 16 28 O -0.48 -13.79 14.77 -2.87 -0.04 -13.83 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.64 7.75 -2.38 -0.02 0.62 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.24 6.50 -2.39 -0.02 1.22 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.23 6.65 -2.38 -0.02 1.21 16 37 H 0.13 1.62 7.72 -2.39 -0.02 1.60 16 38 H 0.15 1.22 7.72 -2.39 -0.02 1.20 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.56 6.26 -2.39 -0.01 1.54 16 43 H 0.04 0.98 6.77 -2.39 -0.02 0.96 16 44 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 45 H 0.06 2.30 8.06 -2.39 -0.02 2.29 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.06 2.10 6.48 -2.39 -0.02 2.09 16 48 H 0.05 2.02 6.69 -2.39 -0.02 2.00 16 49 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 51 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 52 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 53 H 0.07 1.50 6.55 -2.39 -0.02 1.49 16 Total: -1.00 -70.29 402.35 3.40 -66.89 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.87 Total: 14.53 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.52 Total: -12.93 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -4.93 Total: -88.48 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.09 Total: -25.85 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.29 3.40 -66.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.160 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds