Wall clock time and date at job start Tue Mar 31 2020 20:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50703 * 120.00224 * 2 1 4 4 C 1.52992 * 109.47360 * 240.00191 * 3 2 1 5 5 O 1.42899 * 109.46828 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46939 * 119.99831 * 3 2 1 7 7 N 1.46899 * 109.46969 * 174.11864 * 6 3 2 8 8 C 1.46990 * 110.99705 * 73.22784 * 7 6 3 9 9 C 1.53034 * 109.46883 * 184.60555 * 8 7 6 10 10 C 1.53133 * 109.38954 * 300.22996 * 9 8 7 11 11 C 1.53251 * 109.06608 * 58.25829 * 10 9 8 12 12 C 1.45970 * 111.00169 * 197.62306 * 7 6 3 13 13 C 1.53967 * 110.70304 * 52.61139 * 12 7 6 14 14 C 1.51423 * 104.06160 * 265.99068 * 13 12 7 15 15 O 1.21285 * 124.94236 * 164.33447 * 14 13 12 16 16 N 1.34489 * 110.11634 * 344.28506 * 14 13 12 17 17 C 1.46507 * 124.35296 * 179.88175 * 16 14 13 18 18 C 1.52999 * 109.47119 * 269.70003 * 17 16 14 19 19 C 1.50693 * 109.46901 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00394 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99998 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00344 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47032 * 59.99801 * 23 21 19 25 25 H 1.48494 * 109.47122 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47256 * 300.00117 * 23 21 19 27 27 C 1.46923 * 111.29712 * 359.61749 * 16 14 13 28 28 H 1.08000 * 119.99970 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00052 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99970 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47269 * 299.99877 * 4 3 2 32 32 H 1.08996 * 109.47559 * 60.00123 * 4 3 2 33 33 H 1.09004 * 109.47444 * 179.97438 * 4 3 2 34 34 H 0.96698 * 113.99976 * 59.99951 * 5 3 2 35 35 H 1.09001 * 109.47263 * 54.12237 * 6 3 2 36 36 H 1.09002 * 109.47317 * 294.12433 * 6 3 2 37 37 H 1.08996 * 109.47314 * 304.60311 * 8 7 6 38 38 H 1.09005 * 109.47181 * 64.60891 * 8 7 6 39 39 H 1.08995 * 109.48747 * 60.20514 * 9 8 7 40 40 H 1.08999 * 109.48721 * 180.25736 * 9 8 7 41 41 H 1.08996 * 109.54146 * 178.13968 * 10 9 8 42 42 H 1.09004 * 109.53645 * 298.30861 * 10 9 8 43 43 H 1.08999 * 109.49321 * 183.58030 * 11 10 9 44 44 H 1.09003 * 109.48734 * 63.51524 * 11 10 9 45 45 H 1.08999 * 110.51085 * 24.63767 * 13 12 7 46 46 H 1.08999 * 110.50960 * 147.20714 * 13 12 7 47 47 H 1.09002 * 109.47076 * 29.70296 * 17 16 14 48 48 H 1.09002 * 109.46693 * 149.69899 * 17 16 14 49 49 H 1.08998 * 109.46958 * 299.99841 * 18 17 16 50 50 H 1.09003 * 109.47109 * 59.99630 * 18 17 16 51 51 H 0.97000 * 120.00055 * 180.02562 * 22 21 19 52 52 H 1.08996 * 110.26973 * 135.40243 * 27 16 14 53 53 H 1.09005 * 110.27036 * 257.46859 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 7 3.7817 2.5902 1.1804 8 6 2.9846 3.8016 1.4209 9 6 3.8653 5.0382 1.2283 10 6 5.0364 4.9868 2.2136 11 6 5.8329 3.6990 1.9778 12 6 4.9041 2.4998 2.1093 13 6 5.6818 1.1880 1.8972 14 6 5.0699 0.2315 2.8990 15 8 5.2045 -0.9737 2.8804 16 7 4.3564 0.9129 3.8129 17 6 3.6303 0.2934 4.9244 18 6 2.2016 -0.0302 4.4829 19 6 1.4545 -0.6668 5.6264 20 1 1.9494 -0.8252 6.5732 21 6 0.1395 -1.0481 5.4636 22 7 -0.4630 -0.8556 4.3104 23 14 -0.7864 -1.8378 6.8807 24 1 -0.8247 -0.8994 8.0311 25 1 -2.1731 -2.1518 6.4522 26 1 -0.0975 -3.0895 7.2857 27 6 4.4038 2.3589 3.5571 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 3.6514 0.5577 -1.2492 32 1 2.3165 1.3285 -2.1392 33 1 3.4878 2.3304 -1.2494 34 1 0.5439 2.4030 0.7659 35 1 3.5795 0.5028 1.3035 36 1 2.3111 1.4335 2.1362 37 1 2.1528 3.8349 0.7173 38 1 2.5981 3.7860 2.4400 39 1 4.2490 5.0561 0.2082 40 1 3.2757 5.9366 1.4109 41 1 5.6834 5.8497 2.0562 42 1 4.6545 4.9988 3.2345 43 1 6.6304 3.6240 2.7170 44 1 6.2646 3.7165 0.9771 45 1 5.5396 0.8197 0.8812 46 1 6.7419 1.3348 2.1043 47 1 4.1358 -0.6255 5.2214 48 1 3.6025 0.9821 5.7689 49 1 1.6961 0.8888 4.1860 50 1 2.2294 -0.7187 3.6383 51 1 -1.3882 -1.1235 4.1960 52 1 3.4089 2.7929 3.6569 53 1 5.0979 2.8416 4.2452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274614333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:31 Heat of formation + Delta-G solvation = -77.451637 kcal Electronic energy + Delta-G solvation = -32814.782278 eV Core-core repulsion = 28878.917516 eV Total energy + Delta-G solvation = -3935.864762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57450 -39.99890 -38.91665 -36.95555 -35.52092 -34.53003 -33.82357 -33.76100 -31.39049 -31.08064 -29.17233 -28.02332 -27.22970 -26.02860 -24.38328 -23.39714 -22.93504 -22.11327 -20.68564 -20.56235 -19.42627 -18.76425 -18.00522 -17.82872 -17.23198 -16.73265 -16.59662 -16.42180 -16.08357 -15.83322 -15.35106 -15.21555 -14.96395 -14.87126 -14.46555 -14.30121 -14.26937 -13.99390 -13.74146 -13.47372 -13.29973 -13.25355 -13.07419 -12.96484 -12.88656 -12.75062 -12.64318 -12.57371 -12.40866 -12.14957 -12.01157 -11.99251 -11.85118 -11.62591 -11.52028 -11.36347 -11.33326 -10.68742 -10.60060 -10.58246 -10.28582 -9.68574 -9.19978 -8.24055 -6.36617 1.30788 1.35983 1.38958 1.46177 1.55985 2.09440 2.38659 2.76731 3.08382 3.22708 3.33285 3.40846 3.80381 3.84282 3.90502 3.98623 4.09843 4.16615 4.22897 4.25765 4.36384 4.38613 4.41435 4.45886 4.55978 4.63322 4.66380 4.74388 4.80752 4.82129 4.86448 4.89052 5.00275 5.02576 5.12500 5.15584 5.18752 5.21385 5.26365 5.34813 5.36241 5.41878 5.46304 5.54150 5.59645 5.63204 5.75695 5.77893 6.04701 6.13519 6.21276 6.26415 6.62850 6.75760 7.16683 7.32232 8.86066 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.004838 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.273453 B = 5786.471146 C = 6863.033017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.201 4.201 3 C 0.176 3.824 4 C -0.112 4.112 5 O -0.549 6.549 6 C 0.044 3.956 7 N -0.495 5.495 8 C 0.032 3.968 9 C -0.108 4.108 10 C -0.121 4.121 11 C -0.089 4.089 12 C 0.110 3.890 13 C -0.136 4.136 14 C 0.498 3.502 15 O -0.591 6.591 16 N -0.612 5.612 17 C 0.137 3.863 18 C 0.042 3.958 19 C -0.552 4.552 20 H 0.060 0.940 21 C 0.011 3.989 22 N -0.917 5.917 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.071 3.929 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.378 0.622 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.104 0.896 38 H 0.016 0.984 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.138 0.862 47 H 0.052 0.948 48 H 0.083 0.917 49 H -0.005 1.005 50 H -0.026 1.026 51 H 0.263 0.737 52 H 0.065 0.935 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 15.226 -8.979 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.220 4.220 3 C 0.135 3.865 4 C -0.169 4.169 5 O -0.357 6.357 6 C -0.084 4.084 7 N -0.218 5.218 8 C -0.094 4.094 9 C -0.145 4.145 10 C -0.159 4.159 11 C -0.127 4.127 12 C 0.019 3.981 13 C -0.176 4.176 14 C 0.287 3.713 15 O -0.473 6.473 16 N -0.344 5.344 17 C 0.015 3.985 18 C 0.004 3.996 19 C -0.591 4.591 20 H 0.078 0.922 21 C -0.189 4.189 22 N -0.556 5.556 23 Si 0.786 3.214 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.053 4.053 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.226 0.774 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.122 0.878 38 H 0.035 0.965 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.156 0.844 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.014 0.986 50 H -0.008 1.008 51 H 0.072 0.928 52 H 0.084 0.916 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.163 14.758 -10.036 21.051 hybrid contribution -1.859 -1.610 2.378 3.421 sum 9.304 13.149 -7.658 17.835 Atomic orbital electron populations 1.23799 0.95974 1.02429 0.98451 1.23550 0.97094 0.99102 1.02273 1.20074 0.87542 0.83048 0.95816 1.21485 0.97961 1.03692 0.93778 1.86438 1.50564 1.48447 1.50216 1.22587 0.95740 0.93625 0.96495 1.61931 1.09183 1.01608 1.49082 1.22684 0.97636 0.89315 0.99806 1.21535 0.96564 0.95819 1.00605 1.21649 0.97304 0.97827 0.99075 1.21455 0.96150 0.90717 1.04371 1.21553 0.92614 0.96258 0.87711 1.22513 1.02344 0.93397 0.99306 1.21732 0.78295 0.88171 0.83073 1.90676 1.64220 1.16347 1.76009 1.48615 1.49007 1.08500 1.28263 1.21400 0.92405 0.96898 0.87773 1.19027 0.91146 0.94348 0.95094 1.21463 0.97447 1.41252 0.98894 0.92157 1.25866 0.98546 0.96034 0.98460 1.70088 1.12415 1.47802 1.25271 0.85558 0.77356 0.79075 0.79395 1.18767 1.20681 1.19828 1.23053 1.02641 0.79908 0.99708 0.86981 0.88870 0.88487 0.91587 0.92541 0.89553 0.77350 0.92277 0.96423 0.87822 0.96533 0.90652 0.90812 0.89500 0.92561 0.89196 0.89043 0.87256 0.84428 0.92987 0.89888 0.98648 1.00805 0.92807 0.91648 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 13.93 67.79 0.94 -4.74 16 2 C -0.20 -6.88 8.77 25.66 0.22 -6.66 16 3 C 0.18 5.20 1.11 -11.54 -0.01 5.18 16 4 C -0.11 -2.77 8.60 71.98 0.62 -2.15 16 5 O -0.55 -15.13 8.86 -148.98 -1.32 -16.45 16 6 C 0.04 1.41 2.83 86.30 0.24 1.66 16 7 N -0.50 -11.80 3.39 -846.52 -2.87 -14.67 16 8 C 0.03 0.71 4.94 86.30 0.43 1.14 16 9 C -0.11 -1.66 6.07 30.65 0.19 -1.48 16 10 C -0.12 -1.56 5.81 30.72 0.18 -1.38 16 11 C -0.09 -1.21 4.66 30.43 0.14 -1.07 16 12 C 0.11 2.37 0.71 4.06 0.00 2.38 16 13 C -0.14 -3.36 5.44 30.40 0.17 -3.20 16 14 C 0.50 18.64 5.94 87.93 0.52 19.16 16 15 O -0.59 -28.23 17.59 -3.05 -0.05 -28.29 16 16 N -0.61 -22.27 2.43 -818.54 -1.99 -24.27 16 17 C 0.14 6.00 5.88 86.38 0.51 6.51 16 18 C 0.04 2.25 4.89 29.85 0.15 2.39 16 19 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.01 0.60 5.46 84.66 0.46 1.06 16 22 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 23 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.07 1.89 4.86 86.58 0.42 2.31 16 28 H 0.11 3.40 6.41 -2.91 -0.02 3.38 16 29 H 0.09 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.10 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.97 7.45 -2.39 -0.02 1.96 16 34 H 0.38 10.18 8.05 -74.06 -0.60 9.58 16 35 H 0.06 2.19 4.72 -2.39 -0.01 2.18 16 36 H 0.02 0.71 6.44 -2.39 -0.02 0.69 16 37 H 0.10 2.47 5.10 -2.39 -0.01 2.45 16 38 H 0.02 0.42 6.19 -2.38 -0.01 0.41 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.80 7.59 -2.38 -0.02 0.79 16 43 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 2.73 7.49 -2.39 -0.02 2.71 16 46 H 0.14 2.51 7.86 -2.39 -0.02 2.49 16 47 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.00 -0.27 7.53 -2.39 -0.02 -0.29 16 50 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 51 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 52 H 0.07 1.97 5.80 -2.39 -0.01 1.95 16 53 H 0.10 2.08 7.79 -2.38 -0.02 2.06 16 Total: -1.00 -72.22 397.10 1.78 -70.43 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.30 Total: 31.73 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.41 Total: -10.34 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.58 Total: -93.50 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.37 Total: -44.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.22 1.78 -70.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274614333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.018 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds