Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00072 * 2 1 4 4 C 1.53003 * 109.47154 * 111.98741 * 3 2 1 5 5 O 1.42893 * 109.47387 * 351.98678 * 3 2 1 6 6 C 1.53002 * 109.47103 * 231.98119 * 3 2 1 7 7 N 1.46896 * 109.47395 * 274.20739 * 6 3 2 8 8 C 1.46803 * 111.00317 * 58.20509 * 7 6 3 9 9 C 1.53259 * 109.44810 * 189.20071 * 8 7 6 10 10 C 1.53223 * 108.62001 * 304.39374 * 9 8 7 11 11 C 1.52763 * 117.79867 * 266.02935 * 10 9 8 12 12 C 1.52723 * 117.85231 * 197.01171 * 10 9 8 13 13 H 1.08998 * 117.50469 * 215.21930 * 12 10 9 14 14 C 1.50703 * 117.50264 * 0.27256 * 12 10 9 15 15 O 1.21276 * 120.00140 * 0.02562 * 14 12 10 16 16 N 1.34777 * 119.99798 * 180.02562 * 14 12 10 17 17 C 1.46497 * 119.99780 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.46989 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47006 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99834 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00113 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99916 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47175 * 89.99744 * 23 21 19 25 25 H 1.48500 * 109.46982 * 209.99725 * 23 21 19 26 26 H 1.48499 * 109.47418 * 329.99704 * 23 21 19 27 27 C 1.53216 * 114.72968 * 51.42212 * 10 9 8 28 28 C 1.46814 * 110.99953 * 182.89723 * 7 6 3 29 29 H 1.07999 * 119.99816 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00615 * 179.97438 * 1 2 3 31 31 H 1.08007 * 120.00038 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47546 * 66.97996 * 4 3 2 33 33 H 1.09001 * 109.47158 * 306.98131 * 4 3 2 34 34 H 1.08994 * 109.47205 * 186.98331 * 4 3 2 35 35 H 0.96707 * 113.99527 * 300.00171 * 5 3 2 36 36 H 1.09000 * 109.46692 * 34.20852 * 6 3 2 37 37 H 1.09006 * 109.46967 * 154.20232 * 6 3 2 38 38 H 1.09000 * 109.47560 * 309.18576 * 8 7 6 39 39 H 1.09005 * 109.48007 * 69.20186 * 8 7 6 40 40 H 1.09005 * 109.61427 * 184.65813 * 9 8 7 41 41 H 1.08992 * 109.75819 * 64.21661 * 9 8 7 42 42 H 1.09005 * 117.50335 * 359.62300 * 11 10 9 43 43 H 1.08994 * 117.51003 * 144.66792 * 11 10 9 44 44 H 0.97002 * 120.00366 * 359.97438 * 16 14 12 45 45 H 1.08994 * 109.47162 * 299.99245 * 17 16 14 46 46 H 1.08998 * 109.47724 * 59.99941 * 17 16 14 47 47 H 1.09000 * 109.47353 * 299.99926 * 18 17 16 48 48 H 1.09001 * 109.47275 * 60.00109 * 18 17 16 49 49 H 0.96999 * 119.99540 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.61571 * 188.83606 * 27 10 9 51 51 H 1.09007 * 109.61105 * 68.31655 * 27 10 9 52 52 H 1.09002 * 109.47261 * 290.79735 * 28 7 6 53 53 H 1.08997 * 109.47603 * 50.80454 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.7862 1.4767 1.3376 5 8 1.1463 2.3846 -0.1878 6 6 3.0879 1.3025 -1.1364 7 7 4.3283 0.6642 -0.6761 8 6 4.0760 -0.7082 -0.2201 9 6 5.3336 -1.2589 0.4610 10 6 6.5083 -1.1466 -0.5164 11 6 6.8316 -2.3614 -1.3844 12 6 7.7579 -1.9761 -0.2285 13 1 8.7229 -1.5370 -0.4817 14 6 7.7438 -2.8533 0.9968 15 8 6.7640 -2.8818 1.7110 16 7 8.8201 -3.6061 1.2990 17 6 8.8062 -4.4592 2.4898 18 6 10.1392 -5.2021 2.6005 19 6 10.1252 -6.0793 3.8259 20 1 9.2530 -6.1041 4.4623 21 6 11.2263 -6.8494 4.1351 22 7 12.2887 -6.8188 3.3604 23 14 11.2087 -7.9372 5.6536 24 1 10.6811 -9.2783 5.2956 25 1 12.5901 -8.0733 6.1810 26 1 10.3408 -7.3247 6.6913 27 6 6.6981 0.2429 -1.1334 28 6 5.3597 0.7050 -1.7201 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 3.5714 0.7258 1.4254 33 1 2.0740 1.3548 2.1537 34 1 3.2281 2.4718 1.3867 35 1 0.6517 2.3407 -1.0177 36 1 2.6874 0.7483 -1.9853 37 1 3.2977 2.3286 -1.4388 38 1 3.2486 -0.7090 0.4895 39 1 3.8219 -1.3345 -1.0753 40 1 5.1777 -2.3045 0.7268 41 1 5.5490 -0.6811 1.3596 42 1 6.2120 -3.2494 -1.2583 43 1 7.1867 -2.1758 -2.3980 44 1 9.6037 -3.5836 0.7276 45 1 8.6587 -3.8429 3.3766 46 1 7.9938 -5.1815 2.4100 47 1 10.2864 -5.8185 1.7137 48 1 10.9520 -4.4802 2.6803 49 1 13.0634 -7.3603 3.5782 50 1 7.4465 0.1930 -1.9242 51 1 7.0216 0.9439 -0.3638 52 1 5.0744 0.0444 -2.5389 53 1 5.4590 1.7242 -2.0933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274615140.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = -52.884901 kcal Electronic energy + Delta-G solvation = -29589.503100 eV Core-core repulsion = 25654.703632 eV Total energy + Delta-G solvation = -3934.799468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59685 -40.51071 -38.97322 -37.00447 -36.36820 -34.81404 -33.96229 -32.24523 -31.95362 -31.42708 -30.06444 -27.28626 -26.63465 -24.81650 -24.48462 -23.63948 -22.74147 -22.07062 -21.12571 -20.57126 -19.54542 -18.61526 -18.00462 -17.86858 -17.13717 -16.76074 -16.52759 -16.49836 -16.37134 -15.86486 -15.49415 -15.29961 -15.04666 -14.76978 -14.62196 -14.32501 -14.18950 -14.12320 -13.56360 -13.49725 -13.24638 -13.16120 -12.99806 -12.95477 -12.80421 -12.67995 -12.54533 -12.48768 -12.31203 -12.26005 -12.01530 -11.87327 -11.64080 -11.45682 -11.24455 -11.05203 -10.85785 -10.73157 -10.61641 -10.38126 -10.33401 -9.97411 -9.19724 -8.25524 -6.36101 1.28118 1.40556 1.41070 1.52622 1.56884 2.24374 2.44099 2.78787 2.93606 3.08934 3.37642 3.62435 3.70700 3.77711 3.84027 3.88884 3.95855 4.12856 4.20035 4.30896 4.36591 4.41216 4.43570 4.47967 4.50812 4.61538 4.67197 4.71792 4.79458 4.83184 4.84491 4.88062 4.91673 4.95373 5.01703 5.05235 5.12522 5.13695 5.20845 5.30441 5.39546 5.43338 5.49022 5.56548 5.59151 5.64842 5.74922 5.78112 6.14741 6.14973 6.19131 6.68031 6.77126 6.80709 7.33144 7.34746 8.86201 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.001957 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.110814 B =14307.089259 C =15215.454703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.212 4.212 3 C 0.164 3.836 4 C -0.130 4.130 5 O -0.565 6.565 6 C 0.041 3.959 7 N -0.536 5.536 8 C 0.044 3.956 9 C -0.071 4.071 10 C -0.086 4.086 11 C -0.132 4.132 12 C -0.192 4.192 13 H 0.145 0.855 14 C 0.530 3.470 15 O -0.578 6.578 16 N -0.717 5.717 17 C 0.143 3.857 18 C 0.023 3.977 19 C -0.547 4.547 20 H 0.058 0.942 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.073 4.073 28 C 0.062 3.938 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.388 0.612 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.132 0.868 44 H 0.409 0.591 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.008 0.992 48 H 0.008 0.992 49 H 0.266 0.734 50 H 0.092 0.908 51 H 0.069 0.931 52 H 0.040 0.960 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 18.413 -16.549 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.230 4.230 3 C 0.123 3.877 4 C -0.187 4.187 5 O -0.372 6.372 6 C -0.087 4.087 7 N -0.262 5.262 8 C -0.083 4.083 9 C -0.109 4.109 10 C -0.087 4.087 11 C -0.169 4.169 12 C -0.212 4.212 13 H 0.162 0.838 14 C 0.318 3.682 15 O -0.459 6.459 16 N -0.367 5.367 17 C 0.019 3.981 18 C -0.014 4.014 19 C -0.586 4.586 20 H 0.076 0.924 21 C -0.193 4.193 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.111 4.111 28 C -0.065 4.065 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.150 0.850 44 H 0.244 0.756 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.075 0.925 50 H 0.111 0.889 51 H 0.088 0.912 52 H 0.059 0.941 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.138 18.764 -15.079 30.753 hybrid contribution 0.320 -1.648 -0.329 1.711 sum -18.818 17.116 -15.407 29.740 Atomic orbital electron populations 1.24040 0.95853 1.03034 0.98174 1.24047 0.97237 0.99147 1.02581 1.20078 0.87695 0.84094 0.95845 1.21756 0.99697 1.03305 0.93940 1.86594 1.57239 1.47818 1.45577 1.22714 0.89789 1.00472 0.95699 1.61833 1.08304 1.17852 1.38236 1.22658 0.98296 0.88182 0.99171 1.21242 0.92452 1.01019 0.96158 1.21577 0.93819 0.93525 0.99749 1.23165 0.99905 0.98594 0.95264 1.22336 0.99146 1.03984 0.95779 0.83752 1.20390 0.81945 0.79540 0.86319 1.90619 1.34244 1.67740 1.53266 1.46159 1.18319 1.44247 1.28014 1.21168 0.98809 0.91854 0.86262 1.19129 0.91440 0.94447 0.96432 1.21463 1.01125 1.25704 1.10270 0.92414 1.25888 0.94958 0.98292 1.00134 1.70060 1.05325 1.41451 1.39672 0.85438 0.77573 0.78907 0.79092 1.19703 1.20439 1.19138 1.21250 0.97325 0.92243 1.00237 1.22091 0.90891 1.01669 0.91872 0.87141 0.87512 0.86059 0.89565 0.93750 0.92364 0.76215 0.93876 0.89154 0.88934 0.94789 0.91457 0.93153 0.89740 0.84996 0.75552 0.93848 0.93766 0.97357 0.97402 0.92523 0.88921 0.91228 0.94148 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 13.91 67.79 0.94 -1.31 16 2 C -0.21 -3.19 7.60 25.65 0.19 -3.00 16 3 C 0.16 2.56 1.11 -11.54 -0.01 2.54 16 4 C -0.13 -2.53 8.20 71.98 0.59 -1.94 16 5 O -0.56 -8.42 11.74 -148.98 -1.75 -10.17 16 6 C 0.04 0.56 4.75 86.30 0.41 0.97 16 7 N -0.54 -8.67 3.55 -895.64 -3.18 -11.84 16 8 C 0.04 0.84 3.30 86.41 0.29 1.12 16 9 C -0.07 -1.76 4.32 30.76 0.13 -1.62 16 10 C -0.09 -1.74 2.02 -52.21 -0.11 -1.85 16 11 C -0.13 -2.44 9.63 30.53 0.29 -2.14 16 12 C -0.19 -4.37 5.92 -11.61 -0.07 -4.44 16 13 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 14 C 0.53 17.58 7.59 87.66 0.67 18.24 16 15 O -0.58 -23.04 13.13 -3.02 -0.04 -23.08 16 16 N -0.72 -25.17 5.56 -463.07 -2.57 -27.74 16 17 C 0.14 6.25 5.61 86.38 0.48 6.73 16 18 C 0.02 1.17 5.09 29.85 0.15 1.32 16 19 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 20 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 21 C 0.01 0.34 5.46 84.66 0.46 0.81 16 22 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 23 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 C -0.07 -1.08 5.87 30.75 0.18 -0.90 16 28 C 0.06 0.82 5.49 86.41 0.47 1.30 16 29 H 0.11 1.28 6.66 -2.91 -0.02 1.26 16 30 H 0.11 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.12 1.93 5.34 -2.91 -0.02 1.91 16 32 H 0.09 1.82 4.97 -2.39 -0.01 1.81 16 33 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.39 2.86 8.42 -74.05 -0.62 2.24 16 36 H 0.04 0.53 7.89 -2.39 -0.02 0.51 16 37 H 0.09 1.14 8.04 -2.38 -0.02 1.12 16 38 H 0.09 1.78 3.20 -2.39 -0.01 1.78 16 39 H 0.03 0.62 8.12 -2.38 -0.02 0.60 16 40 H 0.07 2.05 6.00 -2.38 -0.01 2.04 16 41 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 42 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.41 12.37 8.47 -92.71 -0.79 11.58 16 45 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 50 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 51 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 53 H 0.09 0.94 8.04 -2.39 -0.02 0.92 16 Total: -1.00 -68.57 408.10 -0.41 -68.98 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.50 Total: 26.95 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.32 Total: -14.82 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -5.46 Total: -93.78 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.79 Total: -33.25 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.57 -0.41 -68.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274615140.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.094 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds