Wall clock time and date at job start Tue Mar 31 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46757 * 2 1 4 4 H 1.08998 * 109.47222 * 55.00494 * 3 2 1 5 5 C 1.52996 * 109.47393 * 295.00118 * 3 2 1 6 6 C 1.53001 * 109.46685 * 175.00353 * 3 2 1 7 7 N 1.46897 * 109.47284 * 185.00393 * 6 3 2 8 8 C 1.48146 * 111.00275 * 190.00537 * 7 6 3 9 9 C 1.52940 * 85.87240 * 223.06014 * 8 7 6 10 10 C 1.48146 * 111.00463 * 90.44183 * 7 6 3 11 11 C 1.54005 * 115.14319 * 266.59845 * 9 8 7 12 12 C 1.55625 * 100.83494 * 194.56271 * 11 9 8 13 13 C 1.54467 * 102.30108 * 33.01553 * 12 11 9 14 14 H 1.08999 * 109.83299 * 98.29754 * 13 12 11 15 15 C 1.50693 * 109.83206 * 219.18822 * 13 12 11 16 16 O 1.21284 * 120.00310 * 114.81265 * 15 13 12 17 17 N 1.34780 * 120.00205 * 294.80736 * 15 13 12 18 18 C 1.47579 * 134.49439 * 180.02562 * 17 15 13 19 19 C 1.53950 * 86.11621 * 204.63969 * 18 17 15 20 20 C 1.50698 * 113.74185 * 221.94108 * 19 18 17 21 21 H 1.08004 * 119.99782 * 358.07289 * 20 19 18 22 22 C 1.37878 * 120.00154 * 178.07233 * 20 19 18 23 23 N 1.31517 * 119.99673 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47199 * 90.00222 * 24 22 20 26 26 H 1.48497 * 109.47283 * 210.00257 * 24 22 20 27 27 H 1.48499 * 109.47112 * 330.00381 * 24 22 20 28 28 C 1.47925 * 134.49772 * 0.02562 * 17 15 13 29 29 O 1.42547 * 116.18289 * 141.15247 * 9 8 7 30 30 H 1.09005 * 109.46977 * 299.99769 * 1 2 3 31 31 H 1.09001 * 109.47778 * 59.99756 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46584 * 240.00891 * 2 1 3 34 34 H 1.08994 * 109.47320 * 120.00712 * 2 1 3 35 35 H 1.09001 * 109.47288 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47243 * 300.00362 * 5 3 2 37 37 H 1.09004 * 109.47147 * 60.00244 * 5 3 2 38 38 H 1.09008 * 109.47322 * 64.99999 * 6 3 2 39 39 H 1.09002 * 109.47321 * 305.00334 * 6 3 2 40 40 H 1.08993 * 113.81371 * 108.81957 * 8 7 6 41 41 H 1.08995 * 113.91534 * 337.30392 * 8 7 6 42 42 H 1.09005 * 113.80560 * 22.70225 * 10 7 6 43 43 H 1.08998 * 113.81353 * 251.17789 * 10 7 6 44 44 H 1.08999 * 111.15873 * 312.39281 * 11 9 8 45 45 H 1.08999 * 111.15726 * 76.58636 * 11 9 8 46 46 H 1.09002 * 110.81642 * 274.84257 * 12 11 9 47 47 H 1.08995 * 110.90839 * 151.23586 * 12 11 9 48 48 H 1.09003 * 113.77049 * 90.34034 * 18 17 15 49 49 H 1.08993 * 113.77081 * 318.93795 * 18 17 15 50 50 H 1.09002 * 113.74276 * 90.74001 * 19 18 17 51 51 H 0.96999 * 119.99516 * 179.97438 * 23 22 20 52 52 H 1.09006 * 113.87423 * 41.10256 * 28 17 15 53 53 H 1.08997 * 113.77410 * 269.60428 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 3.5648 1.4444 0.1256 7 7 4.0446 2.8276 0.2461 8 6 5.5201 2.8898 0.1298 9 6 5.4606 3.8715 1.3010 10 6 4.1148 3.2434 1.6663 11 6 5.4022 5.3588 0.9057 12 6 5.7378 6.0364 2.2660 13 6 6.7101 5.0221 2.9078 14 1 7.7390 5.3447 2.7489 15 6 6.4315 4.9111 4.3846 16 8 6.0226 3.8675 4.8479 17 7 6.6369 5.9715 5.1908 18 6 6.4776 6.2174 6.6372 19 6 6.3323 7.7034 6.2623 20 6 7.0692 8.6374 7.1872 21 1 7.6052 8.2432 8.0380 22 6 7.0593 9.9952 6.9474 23 7 6.4062 10.4751 5.9117 24 14 7.9721 11.1530 8.0944 25 1 9.3658 11.3296 7.6130 26 1 7.2859 12.4697 8.1176 27 1 7.9905 10.5801 9.4643 28 6 7.1124 7.3565 4.9812 29 8 6.4946 3.7522 2.2749 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8902 34 1 1.8933 -0.5139 0.8899 35 1 1.9988 3.1542 -1.3075 36 1 2.0697 1.5877 -2.1491 37 1 0.5488 2.1253 -1.3968 38 1 4.0029 0.9836 -0.7598 39 1 3.8571 0.8800 1.0112 40 1 5.8697 3.3360 -0.8011 41 1 6.0220 1.9518 0.3671 42 1 4.1931 2.4107 2.3653 43 1 3.3530 3.9694 1.9504 44 1 6.1546 5.5958 0.1534 45 1 4.4055 5.6359 0.5624 46 1 4.8401 6.1506 2.8737 47 1 6.2272 6.9979 2.1113 48 1 7.3712 5.9970 7.2213 49 1 5.5730 5.7806 7.0601 50 1 5.3028 8.0113 6.0794 51 1 6.3989 11.4304 5.7432 52 1 6.7142 7.8285 4.0830 53 1 8.1920 7.4701 5.0799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278134817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:31 Heat of formation + Delta-G solvation = -24.939562 kcal Electronic energy + Delta-G solvation = -29887.386222 eV Core-core repulsion = 25953.798554 eV Total energy + Delta-G solvation = -3933.587668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11445 -39.42586 -38.01695 -36.78013 -36.04251 -32.75776 -32.22349 -31.16738 -29.64383 -28.48365 -26.83583 -26.42725 -25.23208 -25.14299 -24.32350 -22.25813 -22.16221 -20.32979 -20.06331 -19.31287 -18.26676 -17.21536 -16.67054 -16.45126 -16.22852 -15.67127 -15.44471 -15.31234 -14.80462 -14.54227 -14.30228 -14.23394 -13.89737 -13.46157 -13.25804 -13.11677 -12.84360 -12.79366 -12.44126 -12.26780 -12.20272 -12.12159 -11.87619 -11.80596 -11.61495 -11.55925 -11.46947 -11.26983 -11.02408 -10.95496 -10.89739 -10.82608 -10.74754 -10.72601 -10.45591 -10.41246 -9.90871 -9.47180 -9.28015 -9.04878 -8.79047 -8.59569 -7.86734 -6.21746 -4.26999 3.05718 3.21303 3.27556 3.29728 3.34134 3.66863 3.89578 4.28550 4.30624 4.49331 4.54684 4.57471 4.68406 4.78803 4.86710 4.97452 5.04527 5.08768 5.10046 5.20888 5.29647 5.30969 5.36082 5.42519 5.46121 5.50351 5.54586 5.56703 5.72560 5.72720 5.75294 5.80394 5.82434 5.84868 5.92350 5.93065 6.02849 6.05932 6.09192 6.18342 6.21169 6.26628 6.28927 6.36720 6.53517 6.60648 6.76066 6.82336 7.04170 7.51638 7.76098 8.13278 8.48253 8.75876 8.76422 9.39985 10.87891 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.002117 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.179946 B =13225.751886 C =13277.147647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.070 0.930 5 C -0.139 4.139 6 C 0.027 3.973 7 N -0.471 5.471 8 C 0.015 3.985 9 C 0.077 3.923 10 C -0.003 4.003 11 C -0.120 4.120 12 C -0.141 4.141 13 C 0.071 3.929 14 H 0.102 0.898 15 C 0.514 3.486 16 O -0.551 6.551 17 N -0.639 5.639 18 C 0.104 3.896 19 C 0.035 3.965 20 C -0.519 4.519 21 H 0.063 0.937 22 C 0.068 3.932 23 N -0.887 5.887 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 C 0.102 3.898 29 O -0.338 6.338 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.264 0.736 52 H 0.065 0.935 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 -13.491 -15.455 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.103 4.103 4 H 0.088 0.912 5 C -0.196 4.196 6 C -0.102 4.102 7 N -0.195 5.195 8 C -0.113 4.113 9 C 0.036 3.964 10 C -0.132 4.132 11 C -0.158 4.158 12 C -0.179 4.179 13 C 0.010 3.990 14 H 0.120 0.880 15 C 0.302 3.698 16 O -0.430 6.430 17 N -0.375 5.375 18 C -0.017 4.017 19 C 0.016 3.984 20 C -0.557 4.557 21 H 0.081 0.919 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.020 4.020 29 O -0.254 6.254 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.349 -13.885 -15.853 22.010 hybrid contribution 1.000 0.274 1.104 1.515 sum -5.350 -13.611 -14.749 20.771 Atomic orbital electron populations 1.21801 0.95753 1.01397 1.02016 1.21569 0.96095 0.96412 1.01794 1.21059 0.94156 0.95758 0.99286 0.91154 1.21757 1.00301 1.01448 0.96077 1.22725 0.96187 0.90138 1.01159 1.68449 1.11533 1.21080 1.18419 1.24056 0.90066 0.99069 0.98152 1.23491 0.88158 0.95794 0.88954 1.24433 0.97402 1.00837 0.90528 1.22873 1.03726 0.91979 0.97216 1.23144 0.99895 0.98948 0.95915 1.22601 1.00932 0.84753 0.90738 0.88034 1.20469 0.78609 0.82568 0.88139 1.90633 1.47319 1.28317 1.76750 1.50540 1.64040 1.12500 1.10415 1.23482 1.00036 0.97732 0.80496 1.20481 0.97342 0.88968 0.91640 1.20977 1.32357 0.91109 1.11292 0.91879 1.25015 0.94994 0.98291 0.95273 1.69942 1.41167 1.13660 1.27591 0.86542 0.79758 0.80145 0.81290 1.20540 1.21142 1.19720 1.23823 0.99698 0.76387 1.02043 1.88389 1.54426 1.29992 1.52626 0.92744 0.92436 0.92978 0.92101 0.92195 0.91525 0.93391 0.93189 0.90995 0.93678 0.88546 0.90446 0.90067 0.89068 0.89789 0.88863 0.89855 0.88627 0.90826 0.92142 0.91856 0.92650 0.91609 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.07 16 3 C -0.08 -0.73 2.58 -90.62 -0.23 -0.97 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.14 -1.16 8.84 37.16 0.33 -0.83 16 6 C 0.03 0.25 4.19 -3.83 -0.02 0.24 16 7 N -0.47 -5.05 5.60 -243.55 -1.36 -6.42 16 8 C 0.02 0.16 7.51 -3.17 -0.02 0.14 16 9 C 0.08 0.99 1.47 -90.27 -0.13 0.85 16 10 C 0.00 -0.04 7.46 -3.17 -0.02 -0.07 16 11 C -0.12 -1.36 6.39 -24.81 -0.16 -1.52 16 12 C -0.14 -1.91 5.82 -24.56 -0.14 -2.05 16 13 C 0.07 1.13 3.74 -27.12 -0.10 1.03 16 14 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 15 C 0.51 10.28 7.26 -10.99 -0.08 10.20 16 16 O -0.55 -12.90 17.25 -14.06 -0.24 -13.15 16 17 N -0.64 -12.84 3.60 -178.12 -0.64 -13.49 16 18 C 0.10 2.16 8.39 -2.97 -0.02 2.14 16 19 C 0.03 0.79 3.60 -90.84 -0.33 0.47 16 20 C -0.52 -12.92 8.77 -34.44 -0.30 -13.22 16 21 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 22 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -23.38 13.29 55.43 0.74 -22.65 16 24 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 C 0.10 2.07 7.97 -2.77 -0.02 2.04 16 29 O -0.34 -5.51 10.37 -54.85 -0.57 -6.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 38 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 39 H 0.04 0.46 7.38 -51.93 -0.38 0.08 16 40 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 42 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 43 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 46 H 0.08 1.24 7.84 -51.93 -0.41 0.84 16 47 H 0.10 1.19 7.52 -51.93 -0.39 0.80 16 48 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 51 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 52 H 0.07 1.27 7.00 -51.93 -0.36 0.91 16 53 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 417.59 15.07 6.29 6.29 Total: -1.00 -28.70 417.59 -11.67 -40.37 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -9.72 Total: 2.10 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.14 Total: -1.71 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -1.27 Total: -42.55 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.81 Total: -19.23 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -28.70 -11.67 -40.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278134817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.435 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds