Wall clock time and date at job start Tue Mar 31 2020 20:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46757 * 2 1 4 4 H 1.08998 * 109.47222 * 55.00494 * 3 2 1 5 5 C 1.52996 * 109.47393 * 295.00118 * 3 2 1 6 6 C 1.53001 * 109.46685 * 175.00353 * 3 2 1 7 7 N 1.46897 * 109.47284 * 185.00393 * 6 3 2 8 8 C 1.48146 * 111.00275 * 190.00537 * 7 6 3 9 9 C 1.52940 * 85.87240 * 223.06014 * 8 7 6 10 10 C 1.48146 * 111.00463 * 90.44183 * 7 6 3 11 11 C 1.54005 * 115.14319 * 266.59845 * 9 8 7 12 12 C 1.55625 * 100.83494 * 194.56271 * 11 9 8 13 13 C 1.54467 * 102.30108 * 33.01553 * 12 11 9 14 14 H 1.08999 * 109.83299 * 98.29754 * 13 12 11 15 15 C 1.50693 * 109.83206 * 219.18822 * 13 12 11 16 16 O 1.21284 * 120.00310 * 114.81265 * 15 13 12 17 17 N 1.34780 * 120.00205 * 294.80736 * 15 13 12 18 18 C 1.47579 * 134.49439 * 180.02562 * 17 15 13 19 19 C 1.53950 * 86.11621 * 204.63969 * 18 17 15 20 20 C 1.50698 * 113.74185 * 221.94108 * 19 18 17 21 21 H 1.08004 * 119.99782 * 358.07289 * 20 19 18 22 22 C 1.37878 * 120.00154 * 178.07233 * 20 19 18 23 23 N 1.31517 * 119.99673 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47199 * 90.00222 * 24 22 20 26 26 H 1.48497 * 109.47283 * 210.00257 * 24 22 20 27 27 H 1.48499 * 109.47112 * 330.00381 * 24 22 20 28 28 C 1.47925 * 134.49772 * 0.02562 * 17 15 13 29 29 O 1.42547 * 116.18289 * 141.15247 * 9 8 7 30 30 H 1.09005 * 109.46977 * 299.99769 * 1 2 3 31 31 H 1.09001 * 109.47778 * 59.99756 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46584 * 240.00891 * 2 1 3 34 34 H 1.08994 * 109.47320 * 120.00712 * 2 1 3 35 35 H 1.09001 * 109.47288 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47243 * 300.00362 * 5 3 2 37 37 H 1.09004 * 109.47147 * 60.00244 * 5 3 2 38 38 H 1.09008 * 109.47322 * 64.99999 * 6 3 2 39 39 H 1.09002 * 109.47321 * 305.00334 * 6 3 2 40 40 H 1.08993 * 113.81371 * 108.81957 * 8 7 6 41 41 H 1.08995 * 113.91534 * 337.30392 * 8 7 6 42 42 H 1.09005 * 113.80560 * 22.70225 * 10 7 6 43 43 H 1.08998 * 113.81353 * 251.17789 * 10 7 6 44 44 H 1.08999 * 111.15873 * 312.39281 * 11 9 8 45 45 H 1.08999 * 111.15726 * 76.58636 * 11 9 8 46 46 H 1.09002 * 110.81642 * 274.84257 * 12 11 9 47 47 H 1.08995 * 110.90839 * 151.23586 * 12 11 9 48 48 H 1.09003 * 113.77049 * 90.34034 * 18 17 15 49 49 H 1.08993 * 113.77081 * 318.93795 * 18 17 15 50 50 H 1.09002 * 113.74276 * 90.74001 * 19 18 17 51 51 H 0.96999 * 119.99516 * 179.97438 * 23 22 20 52 52 H 1.09006 * 113.87423 * 41.10256 * 28 17 15 53 53 H 1.08997 * 113.77410 * 269.60428 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 3.5648 1.4444 0.1256 7 7 4.0446 2.8276 0.2461 8 6 5.5201 2.8898 0.1298 9 6 5.4606 3.8715 1.3010 10 6 4.1148 3.2434 1.6663 11 6 5.4022 5.3588 0.9057 12 6 5.7378 6.0364 2.2660 13 6 6.7101 5.0221 2.9078 14 1 7.7390 5.3447 2.7489 15 6 6.4315 4.9111 4.3846 16 8 6.0226 3.8675 4.8479 17 7 6.6369 5.9715 5.1908 18 6 6.4776 6.2174 6.6372 19 6 6.3323 7.7034 6.2623 20 6 7.0692 8.6374 7.1872 21 1 7.6052 8.2432 8.0380 22 6 7.0593 9.9952 6.9474 23 7 6.4062 10.4751 5.9117 24 14 7.9721 11.1530 8.0944 25 1 9.3658 11.3296 7.6130 26 1 7.2859 12.4697 8.1176 27 1 7.9905 10.5801 9.4643 28 6 7.1124 7.3565 4.9812 29 8 6.4946 3.7522 2.2749 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8902 34 1 1.8933 -0.5139 0.8899 35 1 1.9988 3.1542 -1.3075 36 1 2.0697 1.5877 -2.1491 37 1 0.5488 2.1253 -1.3968 38 1 4.0029 0.9836 -0.7598 39 1 3.8571 0.8800 1.0112 40 1 5.8697 3.3360 -0.8011 41 1 6.0220 1.9518 0.3671 42 1 4.1931 2.4107 2.3653 43 1 3.3530 3.9694 1.9504 44 1 6.1546 5.5958 0.1534 45 1 4.4055 5.6359 0.5624 46 1 4.8401 6.1506 2.8737 47 1 6.2272 6.9979 2.1113 48 1 7.3712 5.9970 7.2213 49 1 5.5730 5.7806 7.0601 50 1 5.3028 8.0113 6.0794 51 1 6.3989 11.4304 5.7432 52 1 6.7142 7.8285 4.0830 53 1 8.1920 7.4701 5.0799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278134817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:30 Heat of formation + Delta-G solvation = -40.844542 kcal Electronic energy + Delta-G solvation = -29888.075914 eV Core-core repulsion = 25953.798554 eV Total energy + Delta-G solvation = -3934.277359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18084 -40.92240 -39.24376 -38.21940 -36.97206 -34.63617 -33.38559 -32.07774 -30.98622 -29.60665 -27.94213 -27.37187 -26.87097 -26.64043 -25.35486 -23.40307 -23.00692 -21.94981 -20.80715 -20.33909 -19.84795 -18.84039 -18.16994 -17.57257 -17.48904 -16.98660 -16.55454 -16.46260 -16.21390 -15.99173 -15.37761 -15.09349 -15.03300 -14.70280 -14.34710 -14.27094 -14.07520 -13.90918 -13.71222 -13.45440 -13.33280 -13.09103 -13.04828 -12.91328 -12.89940 -12.74721 -12.73146 -12.56821 -12.51630 -12.29703 -12.23784 -11.92519 -11.75602 -11.51117 -11.43199 -11.36927 -11.25229 -11.11145 -10.96787 -10.57762 -10.27207 -9.94698 -9.56226 -8.15205 -6.25539 1.47597 1.50605 1.53356 1.59057 1.81692 2.46690 2.59774 2.85782 3.15955 3.29947 3.37984 3.54456 3.63365 3.76247 3.92467 3.97895 4.04677 4.14497 4.23422 4.26485 4.29478 4.37782 4.43320 4.48777 4.55710 4.58032 4.60598 4.64780 4.66191 4.66440 4.74249 4.75143 4.80884 4.85599 4.86613 4.91030 4.95521 5.02966 5.06395 5.10319 5.13226 5.16478 5.20226 5.21290 5.32573 5.51765 5.60284 5.61467 5.83083 5.90476 5.93952 6.23856 6.81096 6.85588 7.13948 7.44031 8.94274 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.002117 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.179946 B =13225.751886 C =13277.147647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.052 0.948 5 C -0.133 4.133 6 C 0.027 3.973 7 N -0.463 5.463 8 C 0.023 3.977 9 C 0.064 3.936 10 C -0.007 4.007 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.075 3.925 14 H 0.122 0.878 15 C 0.508 3.492 16 O -0.592 6.592 17 N -0.638 5.638 18 C 0.106 3.894 19 C 0.026 3.974 20 C -0.531 4.531 21 H 0.063 0.937 22 C 0.024 3.976 23 N -0.914 5.914 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.271 1.271 28 C 0.119 3.881 29 O -0.359 6.359 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.111 0.889 48 H 0.082 0.918 49 H 0.058 0.942 50 H 0.037 0.963 51 H 0.265 0.735 52 H 0.076 0.924 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -13.328 -17.389 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.071 0.929 5 C -0.190 4.190 6 C -0.102 4.102 7 N -0.186 5.186 8 C -0.105 4.105 9 C 0.024 3.976 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.175 4.175 13 C 0.014 3.986 14 H 0.139 0.861 15 C 0.298 3.702 16 O -0.474 6.474 17 N -0.373 5.373 18 C -0.016 4.016 19 C 0.006 3.994 20 C -0.569 4.569 21 H 0.081 0.919 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.781 3.219 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.195 1.195 28 C -0.002 4.002 29 O -0.276 6.276 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.593 -13.724 -17.796 23.158 hybrid contribution 0.704 0.157 1.751 1.894 sum -4.889 -13.567 -16.045 21.573 Atomic orbital electron populations 1.21796 0.95254 1.01929 1.01908 1.21548 0.96518 0.95549 1.02009 1.21029 0.93517 0.96449 0.99023 0.92907 1.21702 1.00739 1.00738 0.95851 1.22766 0.96803 0.89363 1.01250 1.68478 1.11812 1.21850 1.16480 1.24102 0.89803 0.98461 0.98143 1.23842 0.87153 0.97539 0.89077 1.24340 0.97739 1.00141 0.91389 1.22880 1.05109 0.90076 0.96338 1.23129 0.98542 0.99174 0.96691 1.22650 1.02525 0.85623 0.87789 0.86081 1.21310 0.77360 0.81603 0.89878 1.90606 1.49123 1.29777 1.77849 1.50523 1.63902 1.12736 1.10104 1.23406 1.00343 0.96492 0.81405 1.20381 0.96118 0.89709 0.93150 1.21242 1.32329 0.91771 1.11594 0.91930 1.25682 0.95763 0.99648 0.96554 1.70030 1.42302 1.13934 1.28906 0.85606 0.78745 0.78062 0.79535 1.19878 1.21264 1.19524 1.23609 0.99550 0.76041 1.01035 1.88378 1.55418 1.30395 1.53420 0.93480 0.91917 0.92148 0.91081 0.92763 0.92591 0.92526 0.92589 0.89529 0.94801 0.86071 0.90683 0.92384 0.89689 0.87247 0.87884 0.91886 0.87055 0.90004 0.92376 0.94492 0.92609 0.90586 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 71.98 0.70 -1.29 16 2 C -0.12 -1.69 5.40 30.60 0.17 -1.53 16 3 C -0.08 -1.37 2.58 -10.79 -0.03 -1.40 16 4 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.13 -2.01 8.84 71.98 0.64 -1.38 16 6 C 0.03 0.49 4.19 86.30 0.36 0.85 16 7 N -0.46 -9.42 5.60 -929.80 -5.20 -14.62 16 8 C 0.02 0.45 7.51 86.04 0.65 1.10 16 9 C 0.06 1.57 1.47 -10.45 -0.02 1.56 16 10 C -0.01 -0.18 7.46 86.04 0.64 0.46 16 11 C -0.11 -2.15 6.39 31.84 0.20 -1.95 16 12 C -0.14 -3.52 5.82 32.00 0.19 -3.33 16 13 C 0.07 2.32 3.74 30.34 0.11 2.44 16 14 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 15 C 0.51 20.45 7.26 87.65 0.64 21.08 16 16 O -0.59 -28.39 17.25 15.72 0.27 -28.12 16 17 N -0.64 -25.64 3.60 -835.83 -3.01 -28.65 16 18 C 0.11 4.43 8.39 86.49 0.73 5.15 16 19 C 0.03 1.18 3.60 -10.88 -0.04 1.14 16 20 C -0.53 -26.39 8.77 25.60 0.22 -26.17 16 21 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.02 1.21 5.46 84.65 0.46 1.68 16 23 N -0.91 -48.05 13.29 21.45 0.28 -47.77 16 24 Si 0.95 40.04 29.54 68.60 2.03 42.06 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 C 0.12 4.74 7.97 86.42 0.69 5.43 16 29 O -0.36 -11.49 10.37 -130.22 -1.35 -12.84 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.75 6.57 -2.39 -0.02 0.74 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.97 7.75 -2.39 -0.02 0.95 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.78 6.57 -2.38 -0.02 0.76 16 38 H 0.09 1.34 8.08 -2.38 -0.02 1.33 16 39 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 40 H 0.12 1.79 8.11 -2.39 -0.02 1.77 16 41 H 0.07 1.51 7.93 -2.39 -0.02 1.49 16 42 H 0.06 1.76 7.48 -2.38 -0.02 1.74 16 43 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 44 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 1.92 8.05 -2.39 -0.02 1.90 16 46 H 0.06 1.87 7.84 -2.39 -0.02 1.85 16 47 H 0.11 2.50 7.52 -2.39 -0.02 2.48 16 48 H 0.08 3.28 8.09 -2.39 -0.02 3.27 16 49 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 52 H 0.08 2.86 7.00 -2.38 -0.02 2.84 16 53 H 0.08 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -61.74 417.59 0.18 -61.55 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.86 Total: 24.55 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.30 Total: 3.83 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -7.93 Total: -91.04 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.08 Total: -40.96 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -61.74 0.18 -61.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278134817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.710 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds