Wall clock time and date at job start Tue Mar 31 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 N 1.46898 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.46847 * 111.00179 * 189.99620 * 4 3 2 6 6 C 1.53004 * 109.56178 * 185.81704 * 5 4 3 7 7 H 1.09001 * 109.54860 * 61.01391 * 6 5 4 8 8 C 1.53139 * 109.38367 * 181.40122 * 6 5 4 9 9 C 1.53177 * 109.06652 * 62.74224 * 8 6 5 10 10 C 1.53103 * 109.12880 * 57.01826 * 9 8 6 11 11 O 1.42875 * 109.57280 * 302.42063 * 10 9 8 12 12 C 1.42871 * 114.16516 * 60.82572 * 11 10 9 13 13 H 1.08994 * 109.52886 * 59.54017 * 12 11 10 14 14 C 1.53099 * 109.41563 * 179.60994 * 12 11 10 15 15 H 1.08991 * 109.50159 * 182.40202 * 14 12 11 16 16 C 1.50701 * 109.49802 * 302.47599 * 14 12 11 17 17 O 1.21282 * 120.00171 * 86.95336 * 16 14 12 18 18 N 1.34779 * 119.99686 * 267.23152 * 16 14 12 19 19 C 1.47062 * 136.05550 * 4.46807 * 18 16 14 20 20 C 1.53238 * 88.08291 * 207.20834 * 19 18 16 21 21 C 1.50703 * 114.32671 * 220.47756 * 20 19 18 22 22 H 1.07997 * 120.00330 * 93.75705 * 21 20 19 23 23 C 1.37885 * 119.99593 * 273.75690 * 21 20 19 24 24 N 1.31514 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 119.99891 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47537 * 59.99901 * 25 23 21 27 27 H 1.48502 * 109.47131 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47283 * 299.99843 * 25 23 21 29 29 C 1.47063 * 136.05512 * 184.84550 * 18 16 14 30 30 C 1.46845 * 110.99866 * 314.23889 * 4 3 2 31 31 H 1.09003 * 109.47170 * 299.99957 * 1 2 3 32 32 H 1.09002 * 109.47529 * 60.00179 * 1 2 3 33 33 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46941 * 239.99994 * 2 1 3 35 35 H 1.08997 * 109.46828 * 119.99825 * 2 1 3 36 36 H 1.08994 * 109.47400 * 60.00275 * 3 2 1 37 37 H 1.09002 * 109.46954 * 300.00172 * 3 2 1 38 38 H 1.08997 * 109.45340 * 65.79243 * 5 4 3 39 39 H 1.09000 * 109.45610 * 305.84662 * 5 4 3 40 40 H 1.09003 * 109.53653 * 182.61615 * 8 6 5 41 41 H 1.08999 * 109.54430 * 302.86315 * 8 6 5 42 42 H 1.08997 * 109.52548 * 176.91196 * 9 8 6 43 43 H 1.08993 * 109.52773 * 297.04965 * 9 8 6 44 44 H 1.08992 * 109.48218 * 62.30737 * 10 9 8 45 45 H 1.09003 * 109.47739 * 182.34183 * 10 9 8 46 46 H 1.08996 * 113.47282 * 321.94384 * 19 18 16 47 47 H 1.09005 * 113.46884 * 92.38240 * 19 18 16 48 48 H 1.08995 * 114.19945 * 87.73239 * 20 19 18 49 49 H 0.97007 * 119.99468 * 180.02562 * 24 23 21 50 50 H 1.08995 * 113.46529 * 267.62016 * 29 18 16 51 51 H 1.09002 * 113.47049 * 38.00058 * 29 18 16 52 52 H 1.09006 * 109.49899 * 54.11368 * 30 4 3 53 53 H 1.09005 * 109.43690 * 294.13918 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0352 2.7927 0.2373 6 6 5.5578 2.7829 0.0866 7 1 5.8220 2.4811 -0.9270 8 6 6.1056 4.1846 0.3698 9 6 5.7900 4.5615 1.8205 10 6 6.3871 3.5054 2.7545 11 8 5.8625 2.2192 2.4201 12 6 6.1601 1.7941 1.0890 13 1 7.2407 1.7507 0.9534 14 6 5.5583 0.4066 0.8513 15 1 5.8207 0.0627 -0.1491 16 6 6.1008 -0.5588 1.8735 17 8 5.5548 -0.6718 2.9506 18 7 7.1960 -1.2925 1.5928 19 6 8.1569 -1.3786 0.4829 20 6 8.3926 -2.8428 0.8685 21 6 9.8328 -3.2804 0.7936 22 1 10.4562 -3.2393 1.6745 23 6 10.3545 -3.7332 -0.3997 24 7 9.5951 -3.7837 -1.4723 25 14 12.1393 -4.2763 -0.4925 26 1 12.3633 -5.4037 0.4477 27 1 12.4514 -4.7167 -1.8759 28 1 13.0221 -3.1408 -0.1230 29 6 7.9520 -2.3638 2.2587 30 6 4.0355 0.4860 0.9812 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6765 1.9563 -0.8900 38 1 3.7723 3.1123 1.2457 39 1 3.6031 3.4836 -0.4865 40 1 7.1850 4.1917 0.2178 41 1 5.6368 4.9022 -0.3035 42 1 6.2244 5.5352 2.0467 43 1 4.7098 4.6033 1.9594 44 1 7.4712 3.4928 2.6430 45 1 6.1303 3.7458 3.7862 46 1 7.6985 -1.2581 -0.4986 47 1 9.0350 -0.7471 0.6190 48 1 7.7040 -3.5449 0.3986 49 1 9.9621 -4.1026 -2.3117 50 1 8.7748 -1.9974 2.8725 51 1 7.3196 -3.0789 2.7850 52 1 3.6036 -0.4980 0.7984 53 1 3.7735 0.8166 1.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278192358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:24 Heat of formation + Delta-G solvation = -68.338283 kcal Electronic energy + Delta-G solvation = -31310.014231 eV Core-core repulsion = 27374.544653 eV Total energy + Delta-G solvation = -3935.469577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.99278 -40.72589 -38.85848 -38.45714 -35.35879 -34.82933 -34.61743 -32.81491 -31.38003 -30.61695 -27.42939 -27.30391 -26.73337 -26.24331 -24.69907 -24.43231 -23.16243 -21.99978 -21.16727 -19.95581 -19.62560 -18.73713 -17.94262 -17.51564 -17.12436 -17.04571 -16.65730 -16.54119 -16.24711 -15.97472 -15.92102 -15.68876 -14.88721 -14.66035 -14.52005 -14.30086 -14.18495 -14.04618 -13.70540 -13.53127 -13.38288 -13.29936 -13.14266 -13.10487 -12.76348 -12.72863 -12.68842 -12.60206 -12.29191 -12.17526 -12.01816 -11.94483 -11.80695 -11.63898 -11.39941 -11.30497 -11.07930 -11.04569 -10.72073 -10.53235 -10.27856 -9.56047 -9.29492 -8.15515 -6.26943 1.49285 1.50143 1.57482 1.60563 1.93699 2.46719 2.71322 2.88870 3.14408 3.37812 3.60359 3.75348 3.78779 3.87528 3.96912 4.02303 4.09883 4.13702 4.17089 4.26533 4.29761 4.35289 4.41292 4.45643 4.49992 4.54336 4.57628 4.65125 4.66530 4.69391 4.74332 4.80430 4.82625 4.84108 4.86405 4.88445 4.90587 4.96085 5.05624 5.09427 5.13583 5.18689 5.20287 5.27104 5.33895 5.37676 5.59415 5.81800 5.97870 6.12637 6.23902 6.24975 6.80960 6.91290 7.19098 7.42993 8.94194 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.003294 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.243867 B = 8498.829205 C = 9629.644045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.061 3.939 4 N -0.542 5.542 5 C 0.067 3.933 6 C -0.108 4.108 7 H 0.094 0.906 8 C -0.111 4.111 9 C -0.149 4.149 10 C 0.049 3.951 11 O -0.392 6.392 12 C 0.109 3.891 13 H 0.053 0.947 14 C -0.084 4.084 15 H 0.108 0.892 16 C 0.540 3.460 17 O -0.584 6.584 18 N -0.647 5.647 19 C 0.116 3.884 20 C 0.026 3.974 21 C -0.531 4.531 22 H 0.065 0.935 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.958 3.042 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.268 1.268 29 C 0.105 3.895 30 C 0.087 3.913 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.040 0.960 49 H 0.265 0.735 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.073 0.927 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 18.038 -0.240 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.066 4.066 4 N -0.267 5.267 5 C -0.061 4.061 6 C -0.127 4.127 7 H 0.112 0.888 8 C -0.149 4.149 9 C -0.186 4.186 10 C -0.027 4.027 11 O -0.312 6.312 12 C 0.051 3.949 13 H 0.071 0.929 14 C -0.106 4.106 15 H 0.126 0.874 16 C 0.330 3.670 17 O -0.465 6.465 18 N -0.380 5.380 19 C -0.007 4.007 20 C 0.007 3.993 21 C -0.569 4.569 22 H 0.083 0.917 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.783 3.217 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.192 1.192 29 C -0.018 4.018 30 C -0.041 4.041 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.097 0.903 51 H 0.073 0.927 52 H 0.091 0.909 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.161 17.809 -0.156 21.566 hybrid contribution 0.949 -0.423 0.712 1.259 sum -11.213 17.387 0.556 20.696 Atomic orbital electron populations 1.21687 0.93908 1.02225 1.02388 1.21699 0.97144 0.96330 1.01811 1.22184 0.85559 0.97400 1.01435 1.62001 1.08499 1.07349 1.48809 1.22130 0.94075 0.89511 1.00364 1.21742 0.95516 0.95971 0.99443 0.88760 1.21593 1.01572 0.94795 0.96916 1.22181 1.02053 0.99305 0.95095 1.22780 0.97475 0.82535 0.99889 1.88040 1.77720 1.35689 1.29728 1.21866 0.97513 0.91647 0.83882 0.92923 1.21246 0.97397 0.93461 0.98481 0.87411 1.20426 0.79170 0.79577 0.87798 1.90596 1.61242 1.68251 1.26413 1.50058 1.25488 1.37653 1.24837 1.23270 0.88923 0.99670 0.88824 1.20158 0.96449 0.92091 0.90630 1.21164 0.95459 1.44155 0.96110 0.91693 1.25739 1.01800 0.94793 0.95360 1.70051 1.37647 1.46769 1.00928 0.85618 0.80138 0.78938 0.77008 1.19788 1.21132 1.19247 1.23209 0.92926 0.87273 0.98379 1.21635 0.91354 0.97286 0.93861 0.92624 0.91344 0.92354 0.91529 0.93434 0.94954 0.88726 0.94702 0.88440 0.91068 0.88807 0.88654 0.91064 0.93363 0.88587 0.92039 0.90362 0.94164 0.92585 0.90298 0.92724 0.90897 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.13 -2.75 5.18 30.59 0.16 -2.59 16 3 C 0.06 1.23 5.27 86.30 0.46 1.69 16 4 N -0.54 -13.15 4.80 -896.44 -4.31 -17.46 16 5 C 0.07 1.38 4.31 86.31 0.37 1.75 16 6 C -0.11 -2.27 2.67 -10.70 -0.03 -2.30 16 7 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.11 -1.72 5.52 30.70 0.17 -1.55 16 9 C -0.15 -2.35 5.77 30.69 0.18 -2.18 16 10 C 0.05 1.10 6.84 72.02 0.49 1.60 16 11 O -0.39 -12.23 8.72 -148.98 -1.30 -13.53 16 12 C 0.11 3.14 2.32 30.67 0.07 3.21 16 13 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.08 -2.81 2.40 -11.49 -0.03 -2.83 16 15 H 0.11 3.53 7.68 -2.39 -0.02 3.51 16 16 C 0.54 22.52 6.73 87.66 0.59 23.11 16 17 O -0.58 -28.03 16.85 -3.03 -0.05 -28.08 16 18 N -0.65 -27.51 3.69 -858.84 -3.17 -30.68 16 19 C 0.12 4.93 7.83 83.09 0.65 5.59 16 20 C 0.03 1.25 3.77 -11.29 -0.04 1.21 16 21 C -0.53 -27.17 8.83 25.60 0.23 -26.94 16 22 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 23 C 0.02 1.22 5.46 84.66 0.46 1.69 16 24 N -0.92 -49.99 13.26 21.45 0.28 -49.70 16 25 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 C 0.10 4.57 8.19 83.18 0.68 5.25 16 30 C 0.09 2.70 3.65 86.33 0.31 3.02 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.18 6.21 -2.39 -0.01 1.16 16 36 H 0.03 0.65 8.08 -2.39 -0.02 0.63 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 0.80 6.09 -2.39 -0.01 0.79 16 39 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.16 6.58 -2.39 -0.02 1.15 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.58 7.88 -2.39 -0.02 2.56 16 47 H 0.08 3.25 8.10 -2.38 -0.02 3.23 16 48 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 49 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 50 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 51 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.07 2.36 5.81 -2.38 -0.01 2.35 16 53 H 0.03 1.08 7.45 -2.38 -0.02 1.07 16 Total: -1.00 -63.46 403.01 -0.22 -63.68 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.86 Total: 24.89 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.44 Total: 8.09 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -7.19 Total: -97.85 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.35 Total: -41.60 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -63.46 -0.22 -63.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.662 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds