Wall clock time and date at job start Tue Mar 31 2020 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 N 1.46507 * 109.46969 * 119.99929 * 2 1 3 5 5 C 1.46494 * 120.00149 * 294.70847 * 4 2 1 6 6 C 1.53001 * 109.47261 * 270.00096 * 5 4 2 7 7 C 1.53787 * 113.61005 * 274.13696 * 6 5 4 8 8 C 1.53952 * 87.01845 * 220.04378 * 7 6 5 9 9 C 1.53778 * 113.61688 * 176.53077 * 6 5 4 10 10 C 1.34782 * 119.99546 * 114.70482 * 4 2 1 11 11 O 1.21348 * 119.99258 * 185.03035 * 10 4 2 12 12 C 1.49447 * 120.00082 * 5.03163 * 10 4 2 13 13 O 1.21349 * 120.00019 * 274.54613 * 12 10 4 14 14 N 1.34776 * 120.00041 * 94.54968 * 12 10 4 15 15 C 1.46930 * 120.62909 * 354.98385 * 14 12 10 16 16 C 1.53191 * 108.77539 * 126.41315 * 15 14 12 17 17 C 1.53046 * 109.33930 * 54.61501 * 16 15 14 18 18 C 1.53037 * 109.54191 * 298.68555 * 17 16 15 19 19 H 1.09002 * 109.49559 * 301.35106 * 18 17 16 20 20 C 1.50694 * 109.49688 * 181.28093 * 18 17 16 21 21 H 1.08001 * 120.00036 * 0.06725 * 20 18 17 22 22 C 1.37885 * 119.99871 * 180.33884 * 20 18 17 23 23 N 1.31507 * 119.99639 * 179.72957 * 22 20 18 24 24 Si 1.86795 * 119.99841 * 359.72783 * 22 20 18 25 25 H 1.48496 * 109.47279 * 89.99715 * 24 22 20 26 26 H 1.48505 * 109.47012 * 210.00047 * 24 22 20 27 27 H 1.48504 * 109.47246 * 329.99656 * 24 22 20 28 28 C 1.46917 * 120.63163 * 175.00480 * 14 12 10 29 29 H 1.09005 * 109.46956 * 305.10409 * 1 2 3 30 30 H 1.09001 * 109.46958 * 65.09780 * 1 2 3 31 31 H 1.08994 * 109.47210 * 185.10255 * 1 2 3 32 32 H 1.09001 * 109.46906 * 239.99793 * 2 1 3 33 33 H 1.09004 * 109.46694 * 184.28802 * 3 2 1 34 34 H 1.08994 * 109.47478 * 304.29229 * 3 2 1 35 35 H 1.09002 * 109.47236 * 64.29578 * 3 2 1 36 36 H 1.09005 * 109.47126 * 29.99569 * 5 4 2 37 37 H 1.08997 * 109.47172 * 150.00072 * 5 4 2 38 38 H 1.08995 * 112.84783 * 45.32636 * 6 5 4 39 39 H 1.08999 * 113.61568 * 334.56467 * 7 6 5 40 40 H 1.09003 * 113.61081 * 105.46877 * 7 6 5 41 41 H 1.09002 * 113.54246 * 270.81485 * 8 7 6 42 42 H 1.08999 * 113.74712 * 139.94238 * 8 7 6 43 43 H 1.09006 * 113.60962 * 254.52394 * 9 6 5 44 44 H 1.08997 * 113.61838 * 25.42941 * 9 6 5 45 45 H 1.08995 * 109.58645 * 246.20071 * 15 14 12 46 46 H 1.08995 * 109.58521 * 6.62836 * 15 14 12 47 47 H 1.08999 * 109.50014 * 174.58541 * 16 15 14 48 48 H 1.09005 * 109.49775 * 294.68619 * 16 15 14 49 49 H 1.09003 * 109.48610 * 178.64321 * 17 16 15 50 50 H 1.09001 * 109.42875 * 58.68920 * 17 16 15 51 51 H 0.97002 * 119.99647 * 180.02562 * 23 22 20 52 52 H 1.09004 * 109.58756 * 113.79947 * 28 14 12 53 53 H 1.08999 * 109.70437 * 353.44254 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7625 -0.1262 2.5237 6 6 2.9089 0.8109 2.9090 7 6 4.0989 0.0909 3.5653 8 6 4.1918 1.2908 4.5254 9 6 2.6960 1.5238 4.2548 10 6 2.7029 -1.8454 1.0754 11 8 3.0280 -2.4645 2.0671 12 6 3.0615 -2.3631 -0.2799 13 8 2.2675 -3.0388 -0.9009 14 7 4.2667 -2.0798 -0.8124 15 6 5.1957 -1.1742 -0.1226 16 6 6.5441 -1.8825 0.0416 17 6 7.0340 -2.3630 -1.3264 18 6 6.0307 -3.3617 -1.9077 19 1 5.9183 -4.2037 -1.2247 20 6 6.5295 -3.8579 -3.2403 21 1 7.4689 -3.4981 -3.6333 22 6 5.7839 -4.7671 -3.9604 23 7 6.2167 -5.1961 -5.1258 24 14 4.1591 -5.3894 -3.2806 25 1 3.0593 -4.5018 -3.7364 26 1 3.9149 -6.7706 -3.7685 27 1 4.2114 -5.3908 -1.7965 28 6 4.6764 -2.6701 -2.0938 29 1 -0.3633 0.5910 0.8408 30 1 -0.3633 0.4327 -0.9321 31 1 -0.3633 -1.0235 0.0914 32 1 1.8933 -0.5139 -0.8900 33 1 3.1274 1.4433 -0.0768 34 1 1.6153 1.9781 -0.8490 35 1 1.7409 1.9336 0.9260 36 1 0.8267 0.4325 2.5067 37 1 1.6912 -0.9324 3.2537 38 1 3.1970 1.4821 2.1000 39 1 3.8267 -0.8425 4.0580 40 1 4.9629 -0.0121 2.9088 41 1 4.8320 2.0932 4.1587 42 1 4.4109 1.0123 5.5562 43 1 2.4292 2.5759 4.1542 44 1 2.0396 0.9829 4.9365 45 1 5.3286 -0.2678 -0.7131 46 1 4.7956 -0.9183 0.8585 47 1 7.2703 -1.1887 0.4651 48 1 6.4270 -2.7382 0.7066 49 1 8.0048 -2.8462 -1.2158 50 1 7.1278 -1.5097 -1.9981 51 1 5.6919 -5.8354 -5.6326 52 1 4.7670 -1.8857 -2.8452 53 1 3.9344 -3.4007 -2.4159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327735168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:29 Heat of formation + Delta-G solvation = -70.911097 kcal Electronic energy + Delta-G solvation = -32154.044661 eV Core-core repulsion = 28218.463518 eV Total energy + Delta-G solvation = -3935.581143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32006 -40.56817 -39.31045 -38.58924 -37.76508 -35.41590 -33.77036 -32.91269 -32.39764 -30.14986 -28.20964 -27.49685 -27.01803 -26.36966 -24.89869 -23.71029 -23.52144 -22.45360 -20.99730 -20.29782 -19.75334 -19.16989 -18.84468 -18.21232 -17.62287 -16.72131 -16.41695 -16.29968 -16.16132 -15.89884 -15.55419 -15.37231 -15.14907 -15.08835 -14.90602 -14.63992 -14.23925 -14.09566 -13.93488 -13.88534 -13.51507 -13.29695 -13.20866 -13.05035 -13.01729 -12.83211 -12.53109 -12.47033 -12.40543 -12.22170 -12.16941 -11.93471 -11.88822 -11.67739 -11.56599 -11.31746 -11.14943 -11.11716 -11.01797 -10.86083 -10.65493 -9.86836 -9.85367 -8.42388 -6.43443 0.88630 0.97569 1.17757 1.24498 1.34592 1.37734 2.15107 2.19416 2.93675 2.98058 3.62969 3.75471 3.77302 3.83554 3.87190 3.98814 4.00887 4.04278 4.08732 4.18468 4.32264 4.36180 4.39330 4.45854 4.50040 4.57869 4.62329 4.70970 4.73528 4.74222 4.87046 4.89119 4.92768 4.93418 4.96514 4.98167 5.00987 5.12648 5.14288 5.16250 5.23053 5.23795 5.29785 5.35775 5.45756 5.46812 5.56334 5.61606 5.68178 5.95796 6.05184 6.22299 6.59807 6.63646 6.67434 7.22024 8.73649 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.004004 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.665604 B = 6990.551116 C = 7832.168885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 C -0.155 4.155 4 N -0.576 5.576 5 C 0.118 3.882 6 C -0.128 4.128 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.120 4.120 10 C 0.525 3.475 11 O -0.538 6.538 12 C 0.497 3.503 13 O -0.569 6.569 14 N -0.585 5.585 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.095 4.095 18 C 0.001 3.999 19 H 0.007 0.993 20 C -0.507 4.507 21 H 0.058 0.942 22 C 0.036 3.964 23 N -0.932 5.932 24 Si 0.926 3.074 25 H -0.274 1.274 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.107 3.893 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.268 0.732 52 H 0.085 0.915 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 22.587 18.345 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.014 3.986 3 C -0.213 4.213 4 N -0.309 5.309 5 C -0.002 4.002 6 C -0.147 4.147 7 C -0.182 4.182 8 C -0.175 4.175 9 C -0.158 4.158 10 C 0.307 3.693 11 O -0.415 6.415 12 C 0.281 3.719 13 O -0.448 6.448 14 N -0.318 5.318 15 C -0.016 4.016 16 C -0.166 4.166 17 C -0.132 4.132 18 C -0.018 4.018 19 H 0.025 0.975 20 C -0.546 4.546 21 H 0.076 0.924 22 C -0.164 4.164 23 N -0.572 5.572 24 Si 0.756 3.244 25 H -0.200 1.200 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.014 4.014 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.078 0.922 52 H 0.103 0.897 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.213 21.811 18.395 29.983 hybrid contribution -0.736 -1.677 -0.445 1.885 sum -9.949 20.134 17.950 28.750 Atomic orbital electron populations 1.22135 0.92995 1.01964 1.04441 1.21516 0.96187 0.95340 0.85603 1.22237 1.01887 0.92516 1.04633 1.48175 1.52650 1.20546 1.09531 1.21817 0.99871 0.97005 0.81530 1.23191 0.95144 0.97739 0.98592 1.22999 0.98457 0.97695 0.99042 1.22835 0.97418 0.97857 0.99381 1.22820 0.96562 1.01213 0.95218 1.19941 0.79278 0.81995 0.88045 1.90758 1.55394 1.57653 1.37699 1.20873 0.82895 0.81341 0.86809 1.90761 1.50930 1.41376 1.61745 1.48512 1.15210 1.45594 1.22447 1.22134 0.89418 0.92566 0.97485 1.21942 0.96457 1.00834 0.97385 1.21370 0.97879 0.98345 0.95632 1.19458 0.92145 0.94809 0.95411 0.97476 1.21251 1.06719 1.23825 1.02793 0.92363 1.25516 0.99695 0.96315 0.94827 1.69957 1.40076 1.33265 1.13932 0.86259 0.81957 0.77440 0.78776 1.20016 1.21840 1.20452 1.22336 0.97666 0.97770 0.83631 0.89502 0.89693 0.94417 0.91994 0.91894 0.89577 0.89446 0.87110 0.91256 0.87070 0.91932 0.92670 0.89257 0.91599 0.89497 0.89936 0.87565 0.89375 0.86973 0.93403 0.92160 0.90994 0.92238 0.89674 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.18 71.98 0.66 -1.83 16 2 C 0.12 2.20 3.16 44.99 0.14 2.34 16 3 C -0.16 -1.71 7.99 71.98 0.58 -1.13 16 4 N -0.58 -12.94 2.40 -799.39 -1.92 -14.86 16 5 C 0.12 1.93 4.53 86.38 0.39 2.32 16 6 C -0.13 -1.64 3.40 -10.27 -0.03 -1.68 16 7 C -0.14 -2.48 7.29 31.18 0.23 -2.25 16 8 C -0.14 -1.63 8.09 31.18 0.25 -1.38 16 9 C -0.12 -1.14 7.65 31.12 0.24 -0.90 16 10 C 0.53 17.24 5.45 87.27 0.48 17.71 16 11 O -0.54 -20.20 16.17 -3.24 -0.05 -20.25 16 12 C 0.50 19.78 5.42 87.27 0.47 20.25 16 13 O -0.57 -27.33 16.48 -3.24 -0.05 -27.38 16 14 N -0.59 -21.70 2.97 -820.50 -2.44 -24.14 16 15 C 0.10 2.80 6.36 86.36 0.55 3.35 16 16 C -0.13 -3.58 6.08 30.67 0.19 -3.39 16 17 C -0.09 -3.37 5.11 30.62 0.16 -3.21 16 18 C 0.00 0.06 1.84 -11.46 -0.02 0.04 16 19 H 0.01 0.37 7.21 -2.39 -0.02 0.35 16 20 C -0.51 -28.36 9.15 25.60 0.23 -28.13 16 21 H 0.06 3.45 7.99 -2.91 -0.02 3.43 16 22 C 0.04 2.11 5.45 84.66 0.46 2.58 16 23 N -0.93 -58.04 13.96 21.45 0.30 -57.74 16 24 Si 0.93 50.13 24.32 68.60 1.67 51.79 16 25 H -0.27 -14.74 6.91 99.48 0.69 -14.05 16 26 H -0.29 -15.44 7.11 99.48 0.71 -14.74 16 27 H -0.28 -15.57 6.54 99.48 0.65 -14.92 16 28 C 0.11 4.77 5.09 86.37 0.44 5.21 16 29 H 0.09 0.91 7.06 -2.38 -0.02 0.89 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.59 6.17 -2.39 -0.01 1.57 16 33 H 0.06 0.73 7.89 -2.39 -0.02 0.71 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.63 6.27 -2.39 -0.01 0.61 16 36 H 0.11 1.16 6.79 -2.38 -0.02 1.15 16 37 H 0.07 1.44 7.09 -2.39 -0.02 1.42 16 38 H 0.11 1.19 5.69 -2.39 -0.01 1.18 16 39 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 40 H 0.05 1.03 7.57 -2.39 -0.02 1.01 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.09 2.14 5.74 -2.39 -0.01 2.12 16 47 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 52 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 53 H 0.05 2.48 2.34 -2.39 -0.01 2.47 16 Total: -1.00 -77.38 397.79 3.73 -73.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.81 Total: 9.03 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 5.41 Total: 9.90 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.06 Total: -96.74 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.11 Total: -47.63 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.67 Total: 51.79 kcal Total: -77.38 3.73 -73.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327735168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.743 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds