Wall clock time and date at job start Tue Mar 31 2020 20:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.08993 * 109.47268 * 305.00005 * 3 2 1 5 5 C 1.52995 * 109.46892 * 65.00060 * 3 2 1 6 6 C 1.53006 * 109.47224 * 184.99783 * 3 2 1 7 7 H 1.08996 * 109.46944 * 305.85219 * 6 3 2 8 8 C 1.53001 * 109.47047 * 185.84792 * 6 3 2 9 9 N 1.46495 * 109.47070 * 65.84847 * 6 3 2 10 10 C 1.34771 * 120.00220 * 238.37474 * 9 6 3 11 11 O 1.21344 * 119.99826 * 6.00621 * 10 9 6 12 12 C 1.49459 * 120.00194 * 186.00661 * 10 9 6 13 13 O 1.21354 * 119.99721 * 5.68288 * 12 10 9 14 14 N 1.34772 * 119.99855 * 185.67582 * 12 10 9 15 15 C 1.46505 * 119.99604 * 185.03465 * 14 12 10 16 16 C 1.53000 * 109.46689 * 185.15357 * 15 14 12 17 17 C 1.50701 * 115.55160 * 65.59393 * 16 15 14 18 18 H 1.07994 * 119.99866 * 273.88856 * 17 16 15 19 19 C 1.37880 * 119.99917 * 93.89569 * 17 16 15 20 20 N 1.31517 * 119.99744 * 174.19018 * 19 17 16 21 21 Si 1.86801 * 120.00061 * 354.18371 * 19 17 16 22 22 H 1.48493 * 109.47186 * 94.64560 * 21 19 17 23 23 H 1.48499 * 109.46939 * 214.64845 * 21 19 17 24 24 H 1.48502 * 109.47258 * 334.64223 * 21 19 17 25 25 C 1.52996 * 117.49727 * 279.92058 * 16 15 14 26 26 C 1.53005 * 117.49611 * 211.26188 * 16 15 14 27 27 C 1.46510 * 119.99988 * 58.37311 * 9 6 3 28 28 C 1.53000 * 117.49638 * 69.80525 * 27 9 6 29 29 C 1.53001 * 60.00081 * 252.50982 * 28 27 9 30 30 H 1.08996 * 109.47482 * 300.00238 * 1 2 3 31 31 H 1.09007 * 109.47050 * 59.99819 * 1 2 3 32 32 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47273 * 120.00606 * 2 1 3 34 34 H 1.09005 * 109.47431 * 239.99841 * 2 1 3 35 35 H 1.08997 * 109.47801 * 56.66074 * 5 3 2 36 36 H 1.09004 * 109.47180 * 176.66423 * 5 3 2 37 37 H 1.09000 * 109.47452 * 296.66128 * 5 3 2 38 38 H 1.08996 * 109.46914 * 56.60480 * 8 6 3 39 39 H 1.08996 * 109.46955 * 176.59996 * 8 6 3 40 40 H 1.09001 * 109.47164 * 296.60422 * 8 6 3 41 41 H 0.97002 * 120.00250 * 5.03438 * 14 12 10 42 42 H 1.09000 * 109.47284 * 305.15066 * 15 14 12 43 43 H 1.08992 * 109.47106 * 65.15119 * 15 14 12 44 44 H 0.97004 * 119.99700 * 179.97438 * 20 19 17 45 45 H 1.09000 * 117.50505 * 0.02562 * 25 16 15 46 46 H 1.09001 * 117.50252 * 145.02455 * 25 16 15 47 47 H 1.08994 * 117.49886 * 214.98121 * 26 16 15 48 48 H 1.09000 * 117.49692 * 359.97438 * 26 16 15 49 49 H 1.08998 * 115.54920 * 215.51193 * 27 9 6 50 50 H 1.08999 * 117.50169 * 359.97438 * 28 27 9 51 51 H 1.09003 * 117.49574 * 145.02362 * 28 27 9 52 52 H 1.08998 * 117.50539 * 252.51513 * 29 28 27 53 53 H 1.09003 * 117.50088 * 107.48688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1264 1.3073 6 6 3.5649 1.4442 -0.1257 7 1 3.9946 0.8188 0.6568 8 6 4.0870 2.8750 0.0205 9 7 3.9474 0.9165 -1.4377 10 6 4.7460 -0.1658 -1.5220 11 8 5.0596 -0.7682 -0.5164 12 6 5.2454 -0.6240 -2.8541 13 8 5.0180 0.0356 -3.8470 14 7 5.9484 -1.7697 -2.9524 15 6 6.5321 -2.1629 -4.2374 16 6 7.1615 -3.5514 -4.1080 17 6 6.1981 -4.6796 -3.8434 18 1 5.9040 -4.9122 -2.8306 19 6 5.6925 -5.4151 -4.8943 20 7 4.9433 -6.4699 -4.6582 21 14 6.0713 -4.9132 -6.6533 22 1 7.2497 -5.6732 -7.1420 23 1 4.8991 -5.2088 -7.5157 24 1 6.3661 -3.4585 -6.7004 25 6 8.5481 -3.6415 -3.4676 26 6 8.3852 -3.8558 -4.9745 27 6 3.4616 1.5653 -2.6582 28 6 4.0211 2.9494 -2.9931 29 6 2.5812 2.8061 -2.4962 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0202 1.5541 2.1513 36 1 2.0490 3.1346 1.3332 37 1 0.5483 2.1782 1.3690 38 1 3.7513 3.2888 0.9713 39 1 5.1766 2.8688 -0.0086 40 1 3.7051 3.4864 -0.7970 41 1 6.0680 -2.3339 -2.1725 42 1 5.7522 -2.1870 -4.9985 43 1 7.2977 -1.4421 -4.5244 44 1 4.5872 -6.9872 -5.3976 45 1 9.0118 -2.7117 -3.1381 46 1 8.7638 -4.5171 -2.8553 47 1 8.4936 -4.8722 -5.3529 48 1 8.7415 -3.0670 -5.6371 49 1 3.2407 0.8966 -3.4901 50 1 4.7503 3.3775 -2.3052 51 1 4.1686 3.1914 -4.0456 52 1 1.7812 2.9538 -3.2217 53 1 2.3633 3.1397 -1.4816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327748480.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:07 Heat of formation + Delta-G solvation = -18.895862 kcal Electronic energy + Delta-G solvation = -31025.381716 eV Core-core repulsion = 27092.056123 eV Total energy + Delta-G solvation = -3933.325593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18966 -40.45491 -39.12748 -38.72380 -37.05881 -35.24154 -34.24372 -34.10846 -32.52359 -29.33712 -28.87186 -27.58903 -26.61115 -24.91786 -23.67296 -23.51050 -23.39531 -22.36463 -21.33298 -20.81399 -20.62984 -19.07050 -18.17342 -18.08961 -17.21387 -16.92965 -16.61532 -16.52950 -16.07006 -15.81460 -15.55896 -15.17286 -14.97152 -14.76540 -14.71829 -14.63063 -14.47677 -14.21595 -13.75011 -13.71382 -13.60439 -13.18743 -13.11244 -12.71333 -12.65987 -12.58023 -12.46240 -12.35295 -12.20041 -12.17284 -11.97544 -11.94535 -11.69677 -11.61809 -11.45678 -11.37522 -10.98002 -10.92316 -10.71773 -10.53898 -10.30337 -10.03388 -9.59799 -8.31572 -6.38902 0.34882 1.26208 1.34040 1.39516 1.50949 2.11054 2.35137 2.37537 2.91654 3.01994 3.12944 3.40492 3.63264 3.78688 3.87789 3.96540 3.97319 4.06760 4.11904 4.29887 4.32729 4.36292 4.37214 4.45300 4.52059 4.57102 4.64635 4.68794 4.70977 4.72319 4.84269 4.85010 4.89008 4.91518 5.02944 5.07126 5.10618 5.13656 5.17560 5.20891 5.24320 5.25102 5.28392 5.32313 5.38785 5.47225 5.50202 5.57706 5.67147 5.98668 6.25517 6.31679 6.68801 6.70394 6.97544 7.31130 8.83809 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003175 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.211833 B = 8817.740228 C = 9274.742366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.108 4.108 4 H 0.104 0.896 5 C -0.146 4.146 6 C 0.131 3.869 7 H 0.081 0.919 8 C -0.180 4.180 9 N -0.541 5.541 10 C 0.508 3.492 11 O -0.546 6.546 12 C 0.496 3.504 13 O -0.535 6.535 14 N -0.675 5.675 15 C 0.164 3.836 16 C -0.043 4.043 17 C -0.486 4.486 18 H 0.035 0.965 19 C 0.022 3.978 20 N -0.946 5.946 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.235 1.235 25 C -0.158 4.158 26 C -0.184 4.184 27 C 0.053 3.947 28 C -0.179 4.179 29 C -0.177 4.177 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.412 0.588 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.265 0.735 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.107 0.893 49 H 0.120 0.880 50 H 0.103 0.897 51 H 0.102 0.898 52 H 0.119 0.881 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 24.051 7.672 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.126 4.126 4 H 0.122 0.878 5 C -0.204 4.204 6 C 0.029 3.971 7 H 0.099 0.901 8 C -0.237 4.237 9 N -0.271 5.271 10 C 0.291 3.709 11 O -0.424 6.424 12 C 0.276 3.724 13 O -0.414 6.414 14 N -0.325 5.325 15 C 0.041 3.959 16 C -0.044 4.044 17 C -0.523 4.523 18 H 0.054 0.946 19 C -0.176 4.176 20 N -0.586 5.586 21 Si 0.763 3.237 22 H -0.191 1.191 23 H -0.230 1.230 24 H -0.157 1.157 25 C -0.195 4.195 26 C -0.221 4.221 27 C -0.051 4.051 28 C -0.218 4.218 29 C -0.214 4.214 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.247 0.753 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.123 0.877 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.138 0.862 50 H 0.121 0.879 51 H 0.120 0.880 52 H 0.137 0.863 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.196 24.050 7.434 25.704 hybrid contribution 0.146 -1.430 -0.547 1.538 sum -5.050 22.620 6.887 24.178 Atomic orbital electron populations 1.21762 0.94282 1.01526 1.02738 1.21497 0.97119 0.96779 1.00249 1.21868 0.92722 0.96552 1.01507 0.87799 1.21956 1.02466 1.00926 0.95003 1.21474 0.96236 0.96471 0.82896 0.90094 1.22715 1.01238 0.94488 1.05211 1.47326 1.45193 1.26759 1.07850 1.20175 0.80096 0.81700 0.88976 1.90725 1.58543 1.55342 1.37823 1.20239 0.80127 0.82390 0.89603 1.90668 1.56871 1.55654 1.38176 1.45761 1.51177 1.21378 1.14231 1.21098 0.96530 0.94552 0.83754 1.19448 0.88043 0.92722 1.04179 1.20347 1.25608 1.13026 0.93333 0.94642 1.25832 0.94233 0.93933 1.03559 1.70053 1.36571 1.18437 1.33490 0.85903 0.77208 0.81317 0.79287 1.19136 1.22978 1.15739 1.22916 0.99635 1.02484 0.94507 1.23009 1.02769 1.01955 0.94413 1.21982 1.05134 0.90140 0.87860 1.23497 0.97201 0.98147 1.02916 1.24017 0.94442 0.97936 1.04967 0.90821 0.92127 0.93750 0.93352 0.95204 0.93019 0.90221 0.90898 0.88373 0.93269 0.89042 0.75258 0.93102 0.90969 0.92593 0.87721 0.90051 0.90329 0.87435 0.86206 0.87907 0.87995 0.86296 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.67 71.98 0.70 -1.87 16 2 C -0.12 -2.62 5.35 30.59 0.16 -2.46 16 3 C -0.11 -1.79 1.61 -10.79 -0.02 -1.80 16 4 H 0.10 1.50 4.43 -2.39 -0.01 1.49 16 5 C -0.15 -1.66 8.47 71.98 0.61 -1.05 16 6 C 0.13 2.71 2.13 44.99 0.10 2.81 16 7 H 0.08 2.08 6.91 -2.39 -0.02 2.06 16 8 C -0.18 -2.60 7.69 71.98 0.55 -2.04 16 9 N -0.54 -14.21 2.12 -775.57 -1.64 -15.86 16 10 C 0.51 17.35 7.72 87.27 0.67 18.02 16 11 O -0.55 -20.93 15.85 -3.23 -0.05 -20.98 16 12 C 0.50 18.45 7.76 87.27 0.68 19.13 16 13 O -0.54 -20.32 13.44 -3.26 -0.04 -20.36 16 14 N -0.68 -26.56 5.45 -464.40 -2.53 -29.09 16 15 C 0.16 6.60 5.23 86.38 0.45 7.05 16 16 C -0.04 -1.86 0.83 -52.93 -0.04 -1.90 16 17 C -0.49 -26.71 9.34 25.60 0.24 -26.47 16 18 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 19 C 0.02 1.27 5.46 84.65 0.46 1.74 16 20 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 21 Si 0.94 43.92 24.72 68.60 1.70 45.61 16 22 H -0.27 -11.83 7.10 99.48 0.71 -11.13 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 24 H -0.23 -10.01 5.98 99.48 0.60 -9.41 16 25 C -0.16 -5.84 9.96 30.62 0.30 -5.53 16 26 C -0.18 -7.02 7.39 30.62 0.23 -6.79 16 27 C 0.05 1.23 4.61 44.99 0.21 1.44 16 28 C -0.18 -3.27 9.65 30.59 0.30 -2.97 16 29 C -0.18 -2.56 7.80 30.60 0.24 -2.32 16 30 H 0.07 1.01 6.64 -2.39 -0.02 0.99 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.03 0.84 7.65 -2.38 -0.02 0.82 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.61 6.06 -2.39 -0.01 0.60 16 37 H 0.07 0.69 6.73 -2.39 -0.02 0.67 16 38 H 0.10 0.97 6.06 -2.39 -0.01 0.96 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 1.10 3.46 -2.39 -0.01 1.09 16 41 H 0.41 16.69 7.97 -92.71 -0.74 15.95 16 42 H 0.05 2.25 7.24 -2.39 -0.02 2.23 16 43 H 0.07 2.56 8.09 -2.39 -0.02 2.55 16 44 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 45 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 46 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.08 3.22 6.80 -2.39 -0.02 3.21 16 48 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 49 H 0.12 3.45 6.33 -2.39 -0.02 3.44 16 50 H 0.10 1.78 6.45 -2.39 -0.02 1.76 16 51 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.13 1.50 3.55 -2.39 -0.01 1.49 16 Total: -1.00 -68.51 398.56 3.64 -64.87 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: 0.07 Total: 39.31 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.83 Total: -5.02 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.87 Total: -103.43 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.70 Total: 45.61 kcal Total: -68.51 3.64 -64.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748480.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.978 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds