Wall clock time and date at job start Tue Mar 31 2020 19:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47030 * 2 1 4 4 H 1.09001 * 108.44521 * 307.30873 * 3 2 1 5 5 C 1.52564 * 108.50982 * 189.76472 * 3 2 1 6 6 C 1.50884 * 109.35488 * 153.73416 * 5 3 2 7 7 C 1.54294 * 110.23531 * 91.79824 * 6 5 3 8 8 N 1.47604 * 111.94643 * 319.69731 * 7 6 5 9 9 C 1.34779 * 118.64618 * 137.77617 * 8 7 6 10 10 O 1.21345 * 120.00018 * 184.82151 * 9 8 7 11 11 C 1.49448 * 119.99747 * 4.82141 * 9 8 7 12 12 O 1.21355 * 119.99786 * 274.46047 * 11 9 8 13 13 N 1.34772 * 120.00175 * 94.46024 * 11 9 8 14 14 C 1.46923 * 120.63272 * 174.94663 * 13 11 9 15 15 C 1.53192 * 108.77850 * 233.63235 * 14 13 11 16 16 C 1.53045 * 109.31224 * 305.36403 * 15 14 13 17 17 C 1.50701 * 109.46128 * 181.38131 * 16 15 14 18 18 H 1.08004 * 119.99864 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99927 * 180.27403 * 17 16 15 20 20 N 1.31513 * 119.99867 * 359.73198 * 19 17 16 21 21 Si 1.86803 * 120.00122 * 179.72815 * 19 17 16 22 22 H 1.48501 * 109.46944 * 59.99904 * 21 19 17 23 23 H 1.48494 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46805 * 300.00417 * 21 19 17 25 25 C 1.53042 * 109.53589 * 61.36534 * 16 15 14 26 26 C 1.46930 * 120.63068 * 354.97144 * 13 11 9 27 27 C 1.44582 * 122.70931 * 317.50462 * 8 7 6 28 28 C 1.47097 * 108.51395 * 64.99552 * 3 2 1 29 29 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47141 * 300.00633 * 1 2 3 31 31 H 1.08994 * 109.46816 * 60.00126 * 1 2 3 32 32 H 1.08989 * 109.47256 * 239.99721 * 2 1 3 33 33 H 1.09006 * 109.46876 * 119.99465 * 2 1 3 34 34 H 1.09000 * 109.48770 * 273.69546 * 5 3 2 35 35 H 1.08998 * 109.49491 * 33.76868 * 5 3 2 36 36 H 1.09001 * 109.36640 * 212.07288 * 6 5 3 37 37 H 1.08993 * 109.37133 * 331.81844 * 6 5 3 38 38 H 1.08997 * 109.13940 * 199.01186 * 7 6 5 39 39 H 1.09008 * 108.96231 * 80.26553 * 7 6 5 40 40 H 1.09001 * 109.59002 * 113.84108 * 14 13 11 41 41 H 1.09000 * 109.70541 * 353.48390 * 14 13 11 42 42 H 1.09000 * 109.49946 * 185.41331 * 15 14 13 43 43 H 1.09003 * 109.52642 * 65.33078 * 15 14 13 44 44 H 1.09000 * 109.45960 * 301.36168 * 16 15 14 45 45 H 0.97002 * 120.00056 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.50057 * 58.58694 * 25 16 15 47 47 H 1.09002 * 109.49696 * 178.68761 * 25 16 15 48 48 H 1.08996 * 109.58544 * 246.15813 * 26 13 11 49 49 H 1.08996 * 109.58301 * 6.43881 * 26 13 11 50 50 H 1.09001 * 109.44795 * 211.02088 * 27 8 7 51 51 H 1.08998 * 109.44546 * 330.93863 * 27 8 7 52 52 H 1.09004 * 109.32448 * 63.79404 * 28 3 2 53 53 H 1.08997 * 109.32746 * 304.32131 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5641 1.9766 -0.8224 5 6 3.5457 1.4240 -0.2454 6 6 3.9654 2.7279 -0.8779 7 6 4.3779 3.7407 0.2106 8 7 3.4837 3.6847 1.3836 9 6 4.0284 3.7451 2.6149 10 8 3.3266 3.6133 3.5960 11 6 5.4969 3.9742 2.7718 12 8 6.2651 3.0356 2.7325 13 7 5.9680 5.2233 2.9570 14 6 7.3945 5.4535 3.2228 15 6 7.5299 6.2821 4.5042 16 6 6.7011 7.5617 4.3694 17 6 6.8589 8.3956 5.6147 18 1 7.4876 8.0480 6.4213 19 6 6.1966 9.5996 5.7266 20 7 5.4314 10.0229 4.7443 21 14 6.3862 10.6297 7.2734 22 1 7.8155 10.9880 7.4574 23 1 5.5774 11.8685 7.1453 24 1 5.9159 9.8511 8.4473 25 6 5.2262 7.1988 4.1824 26 6 5.0647 6.3806 2.8973 27 6 2.0469 3.5736 1.2660 28 6 1.6398 2.0795 1.2641 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0671 1.2955 0.7031 35 1 3.7953 0.5991 -0.9127 36 1 4.8089 2.5510 -1.5452 37 1 3.1323 3.1373 -1.4492 38 1 4.3498 4.7466 -0.2081 39 1 5.3963 3.5209 0.5312 40 1 7.8389 5.9959 2.3883 41 1 7.9036 4.4982 3.3501 42 1 8.5769 6.5417 4.6607 43 1 7.1680 5.7020 5.3531 44 1 7.0475 8.1294 3.5058 45 1 4.9658 10.8703 4.8228 46 1 4.8856 6.6097 5.0339 47 1 4.6335 8.1107 4.1098 48 1 5.3190 6.9986 2.0363 49 1 4.0346 6.0358 2.8082 50 1 1.5738 4.0776 2.1088 51 1 1.7218 4.0396 0.3359 52 1 2.1292 1.5711 2.0949 53 1 0.5592 1.9997 1.3820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344824687.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:39 Heat of formation + Delta-G solvation = -103.171752 kcal Electronic energy + Delta-G solvation = -31138.265479 eV Core-core repulsion = 27201.285409 eV Total energy + Delta-G solvation = -3936.980070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29004 -40.54707 -39.12519 -38.51484 -36.40514 -35.43206 -33.76159 -33.18443 -31.97789 -31.73277 -28.77788 -28.01996 -26.59625 -25.72232 -24.46587 -24.00381 -22.97183 -22.14229 -21.10871 -20.88032 -19.57010 -19.02336 -18.38313 -17.98756 -17.74275 -16.63892 -16.49832 -16.42097 -15.83931 -15.68657 -15.58181 -15.21049 -15.06666 -14.91319 -14.57717 -14.44799 -14.40668 -14.06662 -13.94295 -13.78843 -13.37343 -13.31026 -13.22441 -13.07895 -12.81691 -12.73442 -12.61052 -12.50671 -12.20980 -12.17815 -11.99670 -11.93158 -11.87947 -11.50847 -11.39965 -11.25307 -11.13446 -11.06869 -10.94805 -10.63730 -10.41736 -9.85257 -9.79240 -8.09310 -6.21610 0.93526 1.04720 1.41743 1.42620 1.43312 1.50053 2.25527 2.43577 3.01549 3.17713 3.59913 3.77495 3.87095 3.92260 3.99930 4.09074 4.17907 4.25076 4.26103 4.32822 4.34832 4.47480 4.51594 4.57046 4.59072 4.60642 4.64863 4.70291 4.77511 4.84670 4.89220 4.92055 4.96245 5.11115 5.11474 5.15363 5.17680 5.19005 5.23111 5.28312 5.33309 5.36149 5.41547 5.43612 5.52565 5.61033 5.62907 5.92984 5.95821 6.04666 6.11720 6.37702 6.64554 6.68846 6.86840 7.45887 8.94316 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002696 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.554010 B =10382.696014 C =10896.596932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.082 4.082 4 H 0.090 0.910 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.093 3.907 8 N -0.575 5.575 9 C 0.511 3.489 10 O -0.550 6.550 11 C 0.511 3.489 12 O -0.556 6.556 13 N -0.580 5.580 14 C 0.116 3.884 15 C -0.117 4.117 16 C 0.047 3.953 17 C -0.536 4.536 18 H 0.047 0.953 19 C 0.019 3.981 20 N -0.910 5.910 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.279 1.279 25 C -0.115 4.115 26 C 0.118 3.882 27 C 0.109 3.891 28 C -0.125 4.125 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.016 0.984 45 H 0.262 0.738 46 H 0.016 0.984 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.117 0.883 52 H 0.032 0.968 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -14.391 -17.612 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.101 4.101 4 H 0.108 0.892 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.028 4.028 8 N -0.308 5.308 9 C 0.294 3.706 10 O -0.427 6.427 11 C 0.294 3.706 12 O -0.435 6.435 13 N -0.312 5.312 14 C -0.005 4.005 15 C -0.155 4.155 16 C 0.029 3.971 17 C -0.574 4.574 18 H 0.066 0.934 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.773 3.227 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.154 4.154 26 C -0.004 4.004 27 C -0.013 4.013 28 C -0.163 4.163 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.135 0.865 52 H 0.051 0.949 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.023 -14.779 -17.208 24.060 hybrid contribution 0.169 0.637 1.671 1.796 sum -7.854 -14.142 -15.537 22.429 Atomic orbital electron populations 1.21852 0.95220 1.01813 1.02201 1.21693 0.96484 0.96168 1.01555 1.20131 0.95390 0.96590 0.97956 0.89196 1.21172 0.95662 0.98280 1.00122 1.21783 1.03689 0.93844 0.96298 1.22460 0.92403 1.02090 0.85844 1.47850 1.08504 1.69747 1.04727 1.20328 0.87881 0.77475 0.84922 1.90774 1.61515 1.50935 1.39512 1.20408 0.89104 0.83558 0.77482 1.90728 1.57684 1.42111 1.52954 1.48338 1.10617 1.05419 1.66821 1.21827 0.79317 1.00861 0.98542 1.21905 1.01029 0.96833 0.95769 1.18609 0.91300 0.91415 0.95787 1.21511 1.28170 1.04451 1.03292 0.93437 1.25613 0.94969 0.98595 0.98874 1.69912 1.30739 1.21445 1.32861 0.85787 0.78287 0.78179 0.80435 1.19643 1.20732 1.20508 1.21805 1.01193 0.98693 0.93712 1.21921 0.92075 0.86154 1.00209 1.21772 0.77852 0.97512 1.04152 1.21273 1.02249 0.94865 0.97915 0.92738 0.92862 0.91618 0.91092 0.93887 0.94938 0.90315 0.88761 0.88796 0.88826 0.91703 0.88935 0.89500 0.90632 0.94574 0.96589 0.92855 0.96463 0.89823 0.89074 0.91071 0.91286 0.86485 0.94908 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.62 71.98 0.69 -1.08 16 2 C -0.12 -1.64 5.27 30.60 0.16 -1.48 16 3 C -0.08 -1.15 1.67 -12.77 -0.02 -1.17 16 4 H 0.09 0.90 7.33 -2.39 -0.02 0.88 16 5 C -0.11 -1.80 4.93 29.76 0.15 -1.66 16 6 C -0.12 -1.46 5.71 30.35 0.17 -1.29 16 7 C 0.09 1.72 5.98 86.61 0.52 2.24 16 8 N -0.58 -13.97 2.23 -819.07 -1.83 -15.80 16 9 C 0.51 17.55 5.38 87.27 0.47 18.01 16 10 O -0.55 -22.70 16.59 -3.23 -0.05 -22.75 16 11 C 0.51 18.76 5.59 87.27 0.49 19.25 16 12 O -0.56 -22.41 16.11 -3.26 -0.05 -22.46 16 13 N -0.58 -20.67 2.97 -820.49 -2.44 -23.10 16 14 C 0.12 3.96 6.41 86.36 0.55 4.52 16 15 C -0.12 -4.74 5.30 30.67 0.16 -4.58 16 16 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 17 C -0.54 -28.92 8.56 25.60 0.22 -28.70 16 18 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 19 C 0.02 1.01 5.30 84.65 0.45 1.45 16 20 N -0.91 -49.99 11.30 21.45 0.24 -49.75 16 21 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 C -0.12 -5.29 5.15 30.67 0.16 -5.13 16 26 C 0.12 4.25 6.36 86.36 0.55 4.80 16 27 C 0.11 2.14 5.34 87.37 0.47 2.60 16 28 C -0.12 -2.30 4.82 29.39 0.14 -2.15 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.66 6.38 -2.39 -0.02 0.65 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.82 7.82 -2.39 -0.02 0.80 16 33 H 0.04 0.73 8.13 -2.38 -0.02 0.71 16 34 H 0.03 0.75 7.49 -2.39 -0.02 0.73 16 35 H 0.08 1.04 7.64 -2.39 -0.02 1.02 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 0.76 7.31 -2.39 -0.02 0.74 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.50 6.07 -2.38 -0.01 1.49 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.09 2.92 7.04 -2.39 -0.02 2.91 16 42 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 4.25 6.02 -2.39 -0.01 4.23 16 48 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 49 H 0.07 2.45 6.31 -2.39 -0.02 2.44 16 50 H 0.07 1.63 7.38 -2.39 -0.02 1.61 16 51 H 0.12 1.46 8.06 -2.39 -0.02 1.44 16 52 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 53 H 0.09 1.42 6.13 -2.39 -0.01 1.40 16 Total: -1.00 -67.59 398.26 4.08 -63.51 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.88 Total: 17.40 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.30 Total: 7.87 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -4.02 Total: -88.65 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.11 Total: -45.22 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.59 4.08 -63.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344824687.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.657 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds