Wall clock time and date at job start Tue Mar 31 2020 19:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47384 * 2 1 4 4 H 1.08999 * 108.44547 * 52.69037 * 3 2 1 5 5 C 1.52565 * 108.39024 * 170.31214 * 3 2 1 6 6 C 1.50883 * 109.35531 * 206.17940 * 5 3 2 7 7 C 1.53945 * 110.09486 * 268.11162 * 6 5 3 8 8 N 1.47599 * 112.14356 * 40.56338 * 7 6 5 9 9 C 1.34781 * 118.64053 * 222.13372 * 8 7 6 10 10 O 1.21344 * 120.00211 * 353.59380 * 9 8 7 11 11 C 1.49459 * 119.99227 * 173.59656 * 9 8 7 12 12 O 1.21344 * 120.00307 * 6.34114 * 11 9 8 13 13 N 1.34779 * 119.99468 * 186.34061 * 11 9 8 14 14 C 1.46926 * 120.63026 * 7.20698 * 13 11 9 15 15 C 1.53193 * 108.77954 * 126.36725 * 14 13 11 16 16 C 1.53045 * 109.30848 * 54.62966 * 15 14 13 17 17 C 1.53042 * 109.53994 * 298.63577 * 16 15 14 18 18 H 1.08998 * 109.49807 * 301.41519 * 17 16 15 19 19 C 1.50700 * 109.49794 * 181.35271 * 17 16 15 20 20 H 1.08003 * 120.00021 * 0.02562 * 19 17 16 21 21 C 1.37869 * 120.00296 * 180.02562 * 19 17 16 22 22 N 1.31518 * 120.00566 * 179.97438 * 21 19 17 23 23 Si 1.86804 * 119.99993 * 359.97438 * 21 19 17 24 24 H 1.48503 * 109.47305 * 89.99651 * 23 21 19 25 25 H 1.48492 * 109.47368 * 210.00208 * 23 21 19 26 26 H 1.48508 * 109.46978 * 330.00202 * 23 21 19 27 27 C 1.46922 * 120.62934 * 186.91916 * 13 11 9 28 28 C 1.44574 * 122.71250 * 42.12898 * 8 7 6 29 29 C 1.47095 * 108.50940 * 294.99834 * 3 2 1 30 30 H 1.08999 * 109.46950 * 59.99873 * 1 2 3 31 31 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46995 * 300.00216 * 1 2 3 33 33 H 1.09002 * 109.46995 * 239.99784 * 2 1 3 34 34 H 1.08997 * 109.47253 * 119.99679 * 2 1 3 35 35 H 1.09002 * 109.49492 * 326.14310 * 5 3 2 36 36 H 1.08996 * 109.49235 * 86.21590 * 5 3 2 37 37 H 1.09002 * 109.36777 * 28.30057 * 6 5 3 38 38 H 1.09002 * 109.36299 * 148.04504 * 6 5 3 39 39 H 1.08997 * 108.94581 * 161.25364 * 7 6 5 40 40 H 1.09005 * 108.94509 * 279.96235 * 7 6 5 41 41 H 1.09001 * 109.58251 * 246.14997 * 14 13 11 42 42 H 1.09002 * 109.59135 * 6.57912 * 14 13 11 43 43 H 1.08993 * 109.49986 * 174.57970 * 15 14 13 44 44 H 1.09001 * 109.49527 * 294.65074 * 15 14 13 45 45 H 1.08995 * 109.45921 * 58.66481 * 16 15 14 46 46 H 1.08999 * 109.45507 * 178.61885 * 16 15 14 47 47 H 0.96997 * 120.00326 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58711 * 353.42393 * 27 13 11 49 49 H 1.08997 * 109.58455 * 113.84404 * 27 13 11 50 50 H 1.08999 * 109.45000 * 149.23090 * 28 8 7 51 51 H 1.09008 * 109.44583 * 29.31770 * 28 8 7 52 52 H 1.08998 * 109.32858 * 296.36427 * 29 3 2 53 53 H 1.09003 * 109.32832 * 55.84753 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5641 1.9766 0.8224 5 6 3.5459 1.4205 0.2436 6 6 3.9695 2.7239 0.8747 7 6 4.3836 3.7293 -0.2150 8 7 3.4875 3.6801 -1.3869 9 6 4.0312 3.7378 -2.6188 10 8 5.2199 3.9448 -2.7483 11 6 3.1700 3.5469 -3.8253 12 8 1.9662 3.4549 -3.7031 13 7 3.7305 3.4768 -5.0490 14 6 5.1910 3.4280 -5.2017 15 6 5.5571 2.2103 -6.0561 16 6 4.7884 2.2702 -7.3782 17 6 3.2843 2.2292 -7.0981 18 1 3.0403 1.3168 -6.5541 19 6 2.5290 2.2548 -8.4019 20 1 3.0675 2.2956 -9.3372 21 6 1.1506 2.2259 -8.4007 22 7 0.4914 2.2487 -9.5385 23 14 0.2192 2.1545 -6.7830 24 1 -0.0568 3.5346 -6.3093 25 1 -1.0636 1.4335 -6.9819 26 1 1.0378 1.4385 -5.7717 27 6 2.8925 3.4415 -6.2552 28 6 2.0507 3.5724 -1.2678 29 6 1.6400 2.0793 -1.2642 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7944 0.5955 0.9113 36 1 4.0660 1.2901 -0.7053 37 1 3.1386 3.1346 1.4484 38 1 4.8147 2.5457 1.5396 39 1 4.3624 4.7350 0.2048 40 1 5.3996 3.5025 -0.5382 41 1 5.5374 4.3369 -5.6936 42 1 5.6583 3.3399 -4.2209 43 1 6.6282 2.2160 -6.2575 44 1 5.2921 1.2980 -5.5217 45 1 5.0355 3.1944 -7.9004 46 1 5.0656 1.4177 -7.9982 47 1 -0.4784 2.2280 -9.5377 48 1 1.8436 3.3623 -5.9693 49 1 3.0476 4.3515 -6.8347 50 1 1.5778 4.0770 -2.1103 51 1 1.7276 4.0400 -0.3375 52 1 2.1271 1.5691 -2.0951 53 1 0.5589 2.0022 -1.3807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350228520.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:55 Heat of formation + Delta-G solvation = -71.655995 kcal Electronic energy + Delta-G solvation = -32067.419581 eV Core-core repulsion = 28131.806137 eV Total energy + Delta-G solvation = -3935.613444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41349 -40.48748 -39.30165 -38.69137 -36.36454 -35.21758 -34.02890 -33.57534 -32.32255 -31.59785 -28.71974 -27.41941 -26.86647 -26.24176 -24.68226 -23.62812 -23.37777 -21.89923 -21.08067 -20.82677 -20.08072 -18.97980 -18.38709 -18.09870 -17.40180 -17.22084 -16.45171 -16.31662 -16.02240 -15.77415 -15.70579 -15.41943 -15.16049 -14.99355 -14.94542 -14.54521 -14.37718 -14.19518 -13.96995 -13.83895 -13.70413 -13.42889 -13.23120 -13.10837 -13.04375 -12.80390 -12.40287 -12.32448 -12.27148 -12.14111 -11.91002 -11.83169 -11.64079 -11.59251 -11.42955 -11.32547 -11.17219 -11.11288 -11.00632 -10.81867 -10.08941 -9.82113 -9.61568 -8.39964 -6.43218 0.27006 1.21822 1.23197 1.29888 1.40356 2.04237 2.20151 2.34308 2.95836 3.06267 3.63248 3.79258 3.86371 3.93615 4.01315 4.10524 4.11654 4.15351 4.24297 4.36528 4.37418 4.44936 4.47173 4.54438 4.56443 4.64126 4.68410 4.70985 4.73789 4.81325 4.86960 4.91230 4.95344 5.03482 5.05979 5.10414 5.13527 5.15630 5.18825 5.20136 5.28904 5.29959 5.36450 5.42342 5.46986 5.52625 5.57270 5.58624 5.67372 5.91061 6.22462 6.23488 6.61065 6.66744 6.87544 7.22429 8.75907 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.004484 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.321996 B = 6242.362931 C = 7679.561348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.086 0.914 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.104 3.896 8 N -0.562 5.562 9 C 0.509 3.491 10 O -0.524 6.524 11 C 0.486 3.514 12 O -0.542 6.542 13 N -0.578 5.578 14 C 0.068 3.932 15 C -0.126 4.126 16 C -0.099 4.099 17 C 0.006 3.994 18 H 0.014 0.986 19 C -0.514 4.514 20 H 0.050 0.950 21 C 0.027 3.973 22 N -0.937 5.937 23 Si 0.938 3.062 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.107 3.893 28 C 0.087 3.913 29 C -0.117 4.117 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.268 0.732 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.027 0.973 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.788 1.043 26.581 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.105 0.895 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.017 4.017 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.404 6.404 11 C 0.270 3.730 12 O -0.422 6.422 13 N -0.309 5.309 14 C -0.053 4.053 15 C -0.164 4.164 16 C -0.137 4.137 17 C -0.013 4.013 18 H 0.032 0.968 19 C -0.552 4.552 20 H 0.068 0.932 21 C -0.171 4.171 22 N -0.577 5.577 23 Si 0.767 3.233 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.190 1.190 27 C -0.015 4.015 28 C -0.035 4.035 29 C -0.155 4.155 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.116 0.884 51 H 0.121 0.879 52 H 0.046 0.954 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.607 1.113 26.541 27.632 hybrid contribution -1.171 -0.209 -0.539 1.306 sum 6.435 0.904 26.001 26.801 Atomic orbital electron populations 1.21861 0.95835 1.01713 1.01884 1.21705 0.96093 0.96538 1.01550 1.20181 0.96140 0.96196 0.97706 0.89532 1.21154 0.94874 0.98585 1.00311 1.21758 1.03553 0.93909 0.96610 1.22251 0.93472 1.01263 0.84668 1.47742 1.08823 1.68115 1.04621 1.19947 0.87222 0.78590 0.85061 1.90403 1.15853 1.49291 1.84846 1.20602 0.88291 0.78798 0.85313 1.90612 1.15810 1.50545 1.85195 1.48396 1.09583 1.68166 1.04796 1.23067 0.77382 0.99116 1.05696 1.21947 1.01414 0.97568 0.95445 1.21408 0.93534 1.01654 0.97062 1.19315 0.95606 0.92834 0.93588 0.96791 1.21264 0.91328 1.49934 0.92687 0.93183 1.25670 0.98738 0.94312 0.98422 1.69992 1.08336 1.52060 1.27292 0.86041 0.77962 0.78647 0.80676 1.20001 1.22095 1.18961 1.22219 0.94155 1.00871 0.84259 1.22346 0.78352 0.97661 1.05132 1.21160 1.01517 0.95396 0.97452 0.93810 0.92729 0.91369 0.94207 0.90517 0.90167 0.94479 0.89698 0.88184 0.89548 0.89891 0.90507 0.83882 0.87831 0.92831 0.92155 0.92414 0.92288 0.92383 0.91103 0.88359 0.87942 0.95369 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.62 71.98 0.69 -1.99 16 2 C -0.12 -2.12 5.26 30.59 0.16 -1.96 16 3 C -0.08 -1.42 1.67 -12.77 -0.02 -1.44 16 4 H 0.09 1.15 7.34 -2.39 -0.02 1.13 16 5 C -0.11 -1.71 4.93 29.76 0.15 -1.56 16 6 C -0.12 -1.32 5.71 30.23 0.17 -1.15 16 7 C 0.10 1.65 6.06 86.49 0.52 2.18 16 8 N -0.56 -13.02 2.24 -819.75 -1.84 -14.86 16 9 C 0.51 15.25 7.54 87.27 0.66 15.90 16 10 O -0.52 -15.92 12.46 -3.23 -0.04 -15.96 16 11 C 0.49 17.94 7.43 87.27 0.65 18.59 16 12 O -0.54 -22.03 11.43 -3.23 -0.04 -22.07 16 13 N -0.58 -22.12 2.98 -821.33 -2.45 -24.56 16 14 C 0.07 2.12 6.03 86.36 0.52 2.64 16 15 C -0.13 -3.84 6.08 30.67 0.19 -3.66 16 16 C -0.10 -3.80 5.11 30.62 0.16 -3.64 16 17 C 0.01 0.29 1.83 -11.61 -0.02 0.27 16 18 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 19 C -0.51 -29.36 9.15 25.60 0.23 -29.12 16 20 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 21 C 0.03 1.62 5.45 84.65 0.46 2.09 16 22 N -0.94 -58.84 13.96 21.44 0.30 -58.54 16 23 Si 0.94 48.86 24.32 68.60 1.67 50.53 16 24 H -0.27 -14.10 6.92 99.48 0.69 -13.41 16 25 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 26 H -0.26 -13.76 6.53 99.48 0.65 -13.11 16 27 C 0.11 4.82 5.10 86.22 0.44 5.26 16 28 C 0.09 1.98 4.96 87.38 0.43 2.41 16 29 C -0.12 -2.77 4.13 29.39 0.12 -2.65 16 30 H 0.04 0.89 6.39 -2.39 -0.02 0.88 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 34 H 0.08 1.07 7.82 -2.39 -0.02 1.06 16 35 H 0.08 1.00 7.64 -2.39 -0.02 0.99 16 36 H 0.04 0.78 7.48 -2.39 -0.02 0.76 16 37 H 0.08 0.71 7.32 -2.39 -0.02 0.69 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.50 7.03 -2.38 -0.02 1.48 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.14 4.30 4.21 -56.26 -0.24 4.06 16 43 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.27 15.83 8.31 -92.71 -0.77 15.05 16 48 H 0.06 2.88 2.31 -2.39 -0.01 2.88 16 49 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 50 H 0.10 2.85 5.12 -13.29 -0.07 2.78 16 51 H 0.10 1.64 8.07 -2.38 -0.02 1.62 16 52 H 0.03 0.87 7.48 -2.39 -0.02 0.85 16 53 H 0.07 1.80 6.14 -2.39 -0.01 1.78 16 Total: -1.00 -69.68 381.38 3.66 -66.02 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.54 Total: 17.27 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.51 Total: 2.17 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -3.98 Total: -97.96 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.08 Total: -38.03 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.67 Total: 50.53 kcal Total: -69.68 3.66 -66.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350228520.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.637 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds