Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47274 * 2 1 4 4 N 1.46495 * 109.46903 * 176.81669 * 3 2 1 5 5 C 1.34779 * 120.00430 * 84.86370 * 4 3 2 6 6 O 1.21285 * 120.00120 * 180.02562 * 5 4 3 7 7 C 1.50697 * 119.99914 * 359.97438 * 5 4 3 8 8 H 1.09008 * 115.55273 * 34.30736 * 7 5 4 9 9 C 1.53064 * 117.50519 * 248.61453 * 7 5 4 10 10 C 1.52699 * 117.53439 * 180.02562 * 7 5 4 11 11 C 1.53246 * 117.87797 * 215.23251 * 10 7 5 12 12 C 1.53332 * 108.48677 * 196.24692 * 11 10 7 13 13 O 1.42877 * 109.32329 * 306.04002 * 12 11 10 14 14 C 1.42866 * 114.52513 * 64.35900 * 13 12 11 15 15 C 1.53247 * 117.87900 * 359.68397 * 10 7 5 16 16 C 1.46503 * 119.99705 * 264.85935 * 4 3 2 17 17 H 1.08996 * 110.89041 * 0.18662 * 16 4 3 18 18 C 1.55160 * 111.00521 * 124.06980 * 16 4 3 19 19 C 1.54322 * 102.94412 * 153.57485 * 18 16 4 20 20 N 1.47025 * 107.27150 * 337.80615 * 19 18 16 21 21 C 1.36932 * 125.64616 * 178.95887 * 20 19 18 22 22 H 1.07999 * 119.99873 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00310 * 359.97438 * 21 20 19 24 24 N 1.31616 * 119.99637 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00236 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47198 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46998 * 119.99376 * 25 23 21 28 28 H 1.48495 * 109.47476 * 239.99479 * 25 23 21 29 29 C 1.47422 * 108.70202 * 358.93853 * 20 19 18 30 30 H 1.08999 * 109.46908 * 300.00190 * 1 2 3 31 31 H 1.09000 * 109.47190 * 59.99940 * 1 2 3 32 32 H 1.08999 * 109.47455 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46908 * 239.99810 * 2 1 3 34 34 H 1.09000 * 109.47190 * 120.00060 * 2 1 3 35 35 H 1.08998 * 109.46909 * 56.81436 * 3 2 1 36 36 H 1.08999 * 109.47022 * 296.80994 * 3 2 1 37 37 H 1.09000 * 117.51027 * 359.95734 * 9 7 5 38 38 H 1.08999 * 117.50935 * 145.03484 * 9 7 5 39 39 H 1.08996 * 109.63587 * 315.94776 * 11 10 7 40 40 H 1.09004 * 109.63331 * 76.55204 * 11 10 7 41 41 H 1.09007 * 109.49534 * 186.08623 * 12 11 10 42 42 H 1.08995 * 109.49525 * 65.99677 * 12 11 10 43 43 H 1.09001 * 109.49290 * 175.69122 * 14 13 12 44 44 H 1.08994 * 109.52094 * 55.61021 * 14 13 12 45 45 H 1.08998 * 109.63594 * 283.45437 * 15 10 7 46 46 H 1.09005 * 109.63514 * 43.85033 * 15 10 7 47 47 H 1.09005 * 110.71933 * 271.94163 * 18 16 4 48 48 H 1.09002 * 110.71909 * 35.03067 * 18 16 4 49 49 H 1.08996 * 109.88116 * 97.22674 * 19 18 16 50 50 H 1.08998 * 109.88172 * 218.38345 * 19 18 16 51 51 H 0.97007 * 120.00312 * 180.02562 * 24 23 21 52 52 H 1.08997 * 110.36689 * 265.28902 * 29 20 19 53 53 H 1.09000 * 110.36576 * 142.96647 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5030 1.4431 0.0767 5 6 4.2368 1.3174 -1.0468 6 8 5.4480 1.3174 -0.9832 7 6 3.5524 1.1756 -2.3819 8 1 2.6179 1.7258 -2.4919 9 6 3.6663 -0.1741 -3.0948 10 6 4.4382 1.0363 -3.6179 11 6 3.9567 1.6830 -4.9211 12 6 4.7592 1.0884 -6.0844 13 8 6.1554 1.2349 -5.8193 14 6 6.6230 0.5057 -4.6831 15 6 5.9573 1.0577 -3.4170 16 6 4.1683 1.5805 1.3747 17 1 3.4376 1.6682 2.1786 18 6 5.1375 0.3962 1.6309 19 6 6.1816 1.0054 2.5903 20 7 6.1395 2.4642 2.4120 21 6 6.9007 3.3740 3.0960 22 1 6.7954 4.4291 2.8908 23 6 7.8078 2.9403 4.0531 24 7 7.9358 1.6546 4.3035 25 14 8.8467 4.1814 4.9856 26 1 8.5148 5.5526 4.5220 27 1 8.5655 4.0695 6.4395 28 1 10.2852 3.9090 4.7372 29 6 5.1424 2.7850 1.3746 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6308 1.9725 0.8601 36 1 1.7241 1.9395 -0.9172 37 1 4.2368 -0.9591 -2.5985 38 1 2.8068 -0.5116 -3.6740 39 1 2.8963 1.4747 -5.0633 40 1 4.1187 2.7601 -4.8772 41 1 4.5069 1.6129 -7.0061 42 1 4.5179 0.0307 -6.1897 43 1 7.7046 0.6134 -4.6018 44 1 6.3698 -0.5482 -4.7973 45 1 6.2896 2.0814 -3.2449 46 1 6.2222 0.4378 -2.5604 47 1 4.6150 -0.4339 2.1063 48 1 5.6062 0.0733 0.7013 49 1 5.9318 0.7504 3.6202 50 1 7.1748 0.6302 2.3439 51 1 8.5694 1.3514 4.9726 52 1 5.6248 2.8828 0.4021 53 1 4.6115 3.7022 1.6295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481415314.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = -46.074667 kcal Electronic energy + Delta-G solvation = -31290.803393 eV Core-core repulsion = 27356.299239 eV Total energy + Delta-G solvation = -3934.504155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85148 -40.29707 -38.63779 -37.18318 -36.99988 -34.56193 -33.25285 -32.10256 -31.35527 -30.87924 -29.12560 -26.96074 -26.70157 -24.82244 -24.58030 -24.25910 -22.68451 -22.17988 -21.87593 -20.02506 -19.48025 -18.93143 -18.08779 -17.45818 -16.93476 -16.82953 -16.58502 -16.22799 -15.93419 -15.71597 -15.58043 -15.40070 -14.83280 -14.73124 -14.46442 -14.34142 -14.12817 -14.04863 -13.80002 -13.68671 -13.21962 -13.10672 -12.95693 -12.88653 -12.78925 -12.68078 -12.42891 -12.32760 -12.04399 -12.03347 -11.99585 -11.99146 -11.82591 -11.68499 -11.59725 -11.42126 -11.27535 -10.83298 -10.74416 -10.41959 -9.98917 -9.57475 -8.88559 -7.87272 -5.23535 1.41912 1.44529 1.54731 1.57864 1.94859 2.47948 2.80905 2.99234 3.29612 3.41479 3.63387 3.70126 3.78713 3.91227 3.93311 3.95826 4.04940 4.11266 4.17152 4.23632 4.24221 4.28475 4.43263 4.52831 4.56467 4.60768 4.65600 4.67400 4.73347 4.76571 4.80574 4.82839 4.85915 4.90463 4.98953 5.01116 5.03386 5.05901 5.12844 5.20678 5.28957 5.31672 5.33268 5.39479 5.44748 5.53054 5.62347 5.68314 5.79062 6.16070 6.32884 6.55750 7.06607 7.35610 7.73579 8.39544 9.23334 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.003518 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.163931 B = 7957.783964 C = 9803.266732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.105 3.895 4 N -0.597 5.597 5 C 0.529 3.471 6 O -0.560 6.560 7 C -0.179 4.179 8 H 0.151 0.849 9 C -0.121 4.121 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.058 3.942 13 O -0.408 6.408 14 C 0.066 3.934 15 C -0.109 4.109 16 C 0.153 3.847 17 H 0.107 0.893 18 C -0.136 4.136 19 C 0.198 3.802 20 N -0.623 5.623 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.266 1.266 27 H -0.286 1.286 28 H -0.293 1.293 29 C 0.127 3.873 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.017 0.983 50 H -0.006 1.006 51 H 0.247 0.753 52 H 0.023 0.977 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.838 -5.455 -19.841 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.016 4.016 4 N -0.328 5.328 5 C 0.319 3.681 6 O -0.439 6.439 7 C -0.199 4.199 8 H 0.168 0.832 9 C -0.158 4.158 10 C -0.105 4.105 11 C -0.148 4.148 12 C -0.018 4.018 13 O -0.327 6.327 14 C -0.011 4.011 15 C -0.146 4.146 16 C 0.048 3.952 17 H 0.125 0.875 18 C -0.175 4.175 19 C 0.072 3.928 20 N -0.349 5.349 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.190 1.190 27 H -0.212 1.212 28 H -0.220 1.220 29 C 0.001 3.999 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.012 0.988 51 H 0.056 0.944 52 H 0.040 0.960 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.960 -5.312 -19.763 27.897 hybrid contribution 1.206 0.467 1.461 1.951 sum -17.754 -4.845 -18.302 25.955 Atomic orbital electron populations 1.21661 0.93466 1.02371 1.02635 1.21916 0.97275 0.96090 1.02295 1.21983 0.76914 0.98191 1.04525 1.47955 1.07831 1.71949 1.05099 1.20348 0.86734 0.75300 0.85729 1.90723 1.15853 1.50462 1.86830 1.22363 1.02675 1.05540 0.89355 0.83169 1.23179 1.02867 0.89079 1.00699 1.21475 0.92793 1.02384 0.93799 1.21845 1.01421 0.99988 0.91514 1.22812 0.79864 1.01214 0.97899 1.87831 1.25640 1.71761 1.47493 1.22656 0.98806 0.95135 0.84483 1.21775 0.93584 1.01254 0.98037 1.21989 0.93661 0.94442 0.85068 0.87537 1.22993 0.97192 0.97634 0.99678 1.20731 0.94253 0.82896 0.94917 1.44637 1.44380 1.02842 1.43072 1.19488 1.14732 0.88963 1.14124 0.90296 1.25706 1.01192 0.98234 1.00856 1.70218 1.39422 1.13937 1.36492 0.84951 0.77750 0.78329 0.77934 1.19024 1.21242 1.22008 1.21911 0.90264 0.96002 0.91747 0.92568 0.91106 0.92224 0.91253 0.93279 0.89563 0.88181 0.89727 0.84163 0.87378 0.91704 0.87131 0.91643 0.89549 0.91879 0.94164 0.90844 0.90480 0.91661 0.96515 0.98813 0.94371 0.95953 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.14 -2.01 6.19 30.59 0.19 -1.82 16 3 C 0.11 1.80 5.18 86.38 0.45 2.24 16 4 N -0.60 -16.42 2.57 -790.12 -2.03 -18.45 16 5 C 0.53 15.82 6.68 87.66 0.59 16.40 16 6 O -0.56 -22.53 9.18 -3.05 -0.03 -22.56 16 7 C -0.18 -3.49 4.59 -11.62 -0.05 -3.54 16 8 H 0.15 1.99 6.51 -2.38 -0.02 1.97 16 9 C -0.12 -1.87 9.41 30.54 0.29 -1.59 16 10 C -0.10 -2.08 2.03 -52.19 -0.11 -2.18 16 11 C -0.11 -1.60 5.92 30.79 0.18 -1.42 16 12 C 0.06 0.87 6.85 72.09 0.49 1.37 16 13 O -0.41 -9.55 10.69 -148.98 -1.59 -11.15 16 14 C 0.07 1.55 6.84 72.09 0.49 2.04 16 15 C -0.11 -3.04 4.35 30.79 0.13 -2.90 16 16 C 0.15 5.57 3.55 46.39 0.16 5.73 16 17 H 0.11 3.53 7.82 -2.39 -0.02 3.51 16 18 C -0.14 -5.69 6.30 31.78 0.20 -5.49 16 19 C 0.20 10.82 5.37 86.73 0.47 11.28 16 20 N -0.62 -35.34 3.39 -691.99 -2.35 -37.68 16 21 C -0.24 -14.81 10.28 84.04 0.86 -13.94 16 22 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 23 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 24 N -0.95 -60.61 10.31 21.65 0.22 -60.39 16 25 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 29 C 0.13 5.89 6.61 86.86 0.57 6.47 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.98 7.49 -2.39 -0.02 0.96 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.38 7.86 -2.39 -0.02 1.37 16 36 H 0.10 1.21 6.23 -2.39 -0.01 1.19 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.22 8.14 -2.38 -0.02 1.21 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 46 H 0.07 2.46 6.05 -2.38 -0.01 2.45 16 47 H 0.08 2.81 8.14 -2.38 -0.02 2.80 16 48 H 0.06 2.91 5.90 -2.39 -0.01 2.90 16 49 H 0.02 0.98 7.38 -2.39 -0.02 0.97 16 50 H -0.01 -0.40 7.51 -2.39 -0.02 -0.42 16 51 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 52 H 0.02 1.15 5.88 -2.39 -0.01 1.14 16 53 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -80.01 399.35 3.22 -76.79 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.87 Total: 14.80 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.10 Total: 8.33 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.16 Total: -116.52 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.62 Total: -33.71 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -80.01 3.22 -76.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481415314.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.718 kcal (2) G-P(sol) polarization free energy of solvation -80.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds