Wall clock time and date at job start Tue Mar 31 2020 19:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99655 * 2 1 4 4 H 1.08997 * 109.99505 * 358.91694 * 3 2 1 5 5 O 1.43742 * 109.87833 * 237.82846 * 3 2 1 6 6 C 1.44378 * 106.97789 * 267.09184 * 5 3 2 7 7 C 1.54989 * 103.49209 * 319.93863 * 6 5 3 8 8 C 1.54106 * 109.87612 * 120.00230 * 3 2 1 9 9 H 1.08990 * 110.48863 * 358.58390 * 8 3 2 10 10 C 1.50700 * 110.48327 * 236.06479 * 8 3 2 11 11 O 1.21279 * 120.00492 * 0.02562 * 10 8 3 12 12 N 1.34773 * 119.99864 * 179.97438 * 10 8 3 13 13 C 1.46503 * 120.00374 * 180.02562 * 12 10 8 14 14 H 1.09008 * 109.46750 * 35.00193 * 13 12 10 15 15 C 1.52997 * 109.47295 * 155.00104 * 13 12 10 16 16 N 1.46493 * 109.47313 * 305.00058 * 15 13 12 17 17 C 1.36941 * 119.99926 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99710 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00331 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99846 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46886 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46699 * 119.99854 * 21 19 17 24 24 H 1.48497 * 109.47313 * 239.99922 * 21 19 17 25 25 C 1.53002 * 109.47196 * 275.00681 * 13 12 10 26 26 C 1.52997 * 109.46817 * 304.99422 * 25 13 12 27 27 C 1.52999 * 109.47317 * 179.97438 * 26 25 13 28 28 C 1.53005 * 109.47159 * 300.00546 * 27 26 25 29 29 C 1.52997 * 109.47452 * 59.99536 * 28 27 26 30 30 C 1.53000 * 109.47233 * 64.99228 * 25 13 12 31 31 H 1.07997 * 119.99722 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00091 * 0.02562 * 1 2 3 33 33 H 1.08001 * 120.00091 * 179.97438 * 2 1 3 34 34 H 1.09002 * 110.61865 * 78.44180 * 6 5 3 35 35 H 1.09000 * 110.62001 * 201.27579 * 6 5 3 36 36 H 1.08998 * 110.90796 * 278.82775 * 7 6 5 37 37 H 1.08999 * 110.91068 * 155.22058 * 7 6 5 38 38 H 0.97001 * 119.99939 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.47097 * 65.00765 * 15 13 12 40 40 H 1.09001 * 109.46728 * 185.00033 * 15 13 12 41 41 H 0.96999 * 119.99901 * 0.02562 * 16 15 13 42 42 H 0.96999 * 120.00362 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47070 * 184.99602 * 25 13 12 44 44 H 1.08996 * 109.47853 * 300.00202 * 26 25 13 45 45 H 1.09002 * 109.47153 * 60.00231 * 26 25 13 46 46 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 48 48 H 1.09002 * 109.46935 * 299.99411 * 28 27 26 49 49 H 1.09001 * 109.46812 * 179.97438 * 28 27 26 50 50 H 1.08993 * 109.47194 * 179.97438 * 29 28 27 51 51 H 1.09002 * 109.46695 * 59.99734 * 29 28 27 52 52 H 1.08992 * 109.47399 * 300.00166 * 30 25 13 53 53 H 1.09004 * 109.46724 * 60.00652 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3628 2.1399 -0.0194 5 8 2.9311 1.3686 -1.1442 6 6 4.2185 0.8670 -0.7254 7 6 4.3945 1.4633 0.6944 8 6 2.9530 1.3966 1.2551 9 1 2.8247 0.5121 1.8789 10 6 2.6334 2.6439 2.0382 11 8 1.7741 3.4038 1.6444 12 7 3.3018 2.9144 3.1768 13 6 2.9909 4.1266 3.9385 14 1 1.9236 4.3367 3.8672 15 6 3.3730 3.9193 5.4054 16 7 2.7067 2.7199 5.9188 17 6 2.8998 2.3325 7.2180 18 1 3.5429 2.9114 7.8642 19 6 2.2688 1.1957 7.7042 20 7 1.4847 0.4904 6.9168 21 14 2.5327 0.6668 9.4763 22 1 3.4511 1.6221 10.1464 23 1 1.2292 0.6521 10.1877 24 1 3.1269 -0.6938 9.5036 25 6 3.7819 5.3050 3.3669 26 6 5.2723 4.9595 3.3521 27 6 6.0633 6.1375 2.7800 28 6 5.5917 6.4235 1.3528 29 6 4.1014 6.7691 1.3677 30 6 3.3106 5.5915 1.9398 31 1 -0.5399 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 4.2118 -0.2223 -0.6861 35 1 5.0041 1.2209 -1.3930 36 1 4.7444 2.4943 0.6426 37 1 5.0725 0.8533 1.2912 38 1 3.9889 2.3065 3.4920 39 1 4.4532 3.7975 5.4857 40 1 3.0608 4.7860 5.9881 41 1 2.1288 2.2002 5.3384 42 1 1.0435 -0.3038 7.2567 43 1 3.6195 6.1866 3.9871 44 1 5.6082 4.7553 4.3687 45 1 5.4347 4.0779 2.7319 46 1 7.1251 5.8912 2.7690 47 1 5.9009 7.0193 3.3998 48 1 5.7541 5.5417 0.7330 49 1 6.1550 7.2631 0.9455 50 1 3.7656 6.9732 0.3510 51 1 3.9391 7.6508 1.9876 52 1 3.4730 4.7100 1.3197 53 1 2.2487 5.8377 1.9505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496321304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:16 Heat of formation + Delta-G solvation = -91.889279 kcal Electronic energy + Delta-G solvation = -31467.817076 eV Core-core repulsion = 27531.326250 eV Total energy + Delta-G solvation = -3936.490825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82974 -40.35148 -38.81557 -37.15697 -35.33331 -34.67663 -33.74298 -32.67303 -31.81335 -31.57168 -29.50658 -28.60750 -25.78452 -24.70284 -23.91229 -23.34597 -22.98599 -21.64133 -21.02223 -20.85685 -20.37265 -19.22757 -18.38602 -17.56567 -17.12848 -16.92328 -16.58590 -16.38751 -15.93307 -15.88557 -15.33229 -15.17125 -14.84403 -14.81010 -14.71584 -14.61795 -14.44817 -14.04725 -13.78148 -13.43017 -13.25406 -13.15828 -12.94185 -12.86122 -12.78914 -12.60198 -12.45915 -12.24612 -12.19663 -12.02015 -12.00859 -11.94287 -11.86159 -11.75312 -11.29738 -11.13817 -10.97918 -10.80914 -10.71176 -10.66345 -10.37224 -9.84977 -8.99050 -7.93776 -5.22778 1.22109 1.48107 1.49436 1.58704 1.67625 2.22112 2.56336 3.06105 3.40734 3.46126 3.57545 3.66196 3.69605 3.80527 3.89474 4.09783 4.14173 4.19339 4.19628 4.22938 4.29081 4.32365 4.49531 4.52058 4.54352 4.60551 4.68143 4.71176 4.75521 4.76360 4.82182 4.83193 4.88233 4.92701 5.00431 5.05664 5.07413 5.16855 5.25394 5.28029 5.34857 5.35765 5.43820 5.52190 5.53592 5.58424 5.62367 5.69523 5.76679 5.89377 6.27127 6.61513 7.29938 7.34790 8.08239 8.32207 9.29344 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007955 B = 0.004548 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.096373 B = 6154.652536 C = 8725.182576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.186 4.186 3 C 0.117 3.883 4 H 0.092 0.908 5 O -0.385 6.385 6 C 0.042 3.958 7 C -0.135 4.135 8 C -0.136 4.136 9 H 0.115 0.885 10 C 0.523 3.477 11 O -0.570 6.570 12 N -0.696 5.696 13 C 0.154 3.846 14 H 0.053 0.947 15 C 0.146 3.854 16 N -0.741 5.741 17 C -0.240 4.240 18 H 0.078 0.922 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.299 1.299 24 H -0.293 1.293 25 C -0.085 4.085 26 C -0.109 4.109 27 C -0.114 4.114 28 C -0.113 4.113 29 C -0.118 4.118 30 C -0.096 4.096 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.408 0.592 39 H 0.046 0.954 40 H 0.030 0.970 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.051 0.949 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.732 5.053 -15.354 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C 0.059 3.941 4 H 0.109 0.891 5 O -0.304 6.304 6 C -0.034 4.034 7 C -0.172 4.172 8 C -0.157 4.157 9 H 0.133 0.867 10 C 0.310 3.690 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.048 3.952 14 H 0.072 0.928 15 C 0.020 3.980 16 N -0.384 5.384 17 C -0.372 4.372 18 H 0.096 0.904 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.227 1.227 24 H -0.220 1.220 25 C -0.105 4.105 26 C -0.147 4.147 27 C -0.151 4.151 28 C -0.151 4.151 29 C -0.155 4.155 30 C -0.134 4.134 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.243 0.757 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.070 0.930 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.161 5.720 -15.645 19.512 hybrid contribution -0.581 -1.038 1.355 1.803 sum 9.580 4.682 -14.290 17.830 Atomic orbital electron populations 1.24074 0.96024 1.02730 0.98012 1.23379 0.96692 0.98443 1.01924 1.21713 0.92082 0.96396 0.83943 0.89059 1.88932 1.22841 1.85306 1.33321 1.23799 0.85538 0.99331 0.94710 1.23150 0.93323 1.03457 0.97313 1.22683 0.98457 0.97166 0.97434 0.86666 1.20461 0.80601 0.86889 0.81018 1.90652 1.33862 1.50910 1.69581 1.45780 1.40194 1.25151 1.23493 1.21074 0.98817 0.85180 0.90080 0.92841 1.21134 0.96535 0.89384 0.90995 1.42515 1.56587 1.28720 1.10595 1.19644 1.22315 1.06167 0.89096 0.90416 1.25494 1.00368 0.98740 1.01779 1.69826 1.36017 1.19329 1.36633 0.85130 0.76864 0.77735 0.80342 1.18965 1.22671 1.21998 1.21445 0.95888 0.96493 0.96630 1.21562 0.93052 0.98760 1.01291 1.21506 0.99519 0.98060 0.96019 1.21498 0.95121 1.01377 0.97091 1.21541 0.95804 0.97715 1.00444 1.21461 0.98159 0.98373 0.95410 0.86211 0.89149 0.85513 0.90415 0.86846 0.90297 0.86827 0.75651 0.93591 0.95233 0.79403 0.94171 0.90291 0.91614 0.91998 0.90932 0.91816 0.92601 0.91023 0.92493 0.91835 0.93003 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 14.32 67.78 0.97 -3.21 16 2 C -0.19 -4.62 8.87 25.65 0.23 -4.39 16 3 C 0.12 3.21 3.44 30.22 0.10 3.32 16 4 H 0.09 3.04 6.11 -2.39 -0.01 3.03 16 5 O -0.38 -10.14 11.18 -148.98 -1.66 -11.80 16 6 C 0.04 0.75 7.66 72.66 0.56 1.30 16 7 C -0.13 -2.47 6.69 31.89 0.21 -2.26 16 8 C -0.14 -3.45 3.06 -10.55 -0.03 -3.49 16 9 H 0.12 2.90 7.69 -2.39 -0.02 2.88 16 10 C 0.52 16.46 5.58 87.66 0.49 16.95 16 11 O -0.57 -21.57 12.40 -3.03 -0.04 -21.61 16 12 N -0.70 -20.89 3.48 -442.53 -1.54 -22.43 16 13 C 0.15 4.98 2.11 44.99 0.09 5.07 16 14 H 0.05 2.10 7.58 -2.38 -0.02 2.08 16 15 C 0.15 5.39 5.68 86.38 0.49 5.88 16 16 N -0.74 -35.64 5.43 -343.46 -1.87 -37.50 16 17 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 18 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.97 -57.83 13.06 21.65 0.28 -57.54 16 21 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 C -0.08 -2.20 2.01 -10.79 -0.02 -2.22 16 26 C -0.11 -2.35 4.75 30.59 0.15 -2.20 16 27 C -0.11 -2.02 5.92 30.60 0.18 -1.83 16 28 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 29 C -0.12 -2.53 5.92 30.58 0.18 -2.35 16 30 C -0.10 -2.62 3.80 30.58 0.12 -2.50 16 31 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.09 2.35 7.85 -2.91 -0.02 2.33 16 33 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.51 7.86 -2.39 -0.02 1.50 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 11.48 8.60 -92.71 -0.80 10.68 16 39 H 0.05 1.57 6.34 -2.39 -0.02 1.56 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.37 19.61 7.33 -92.71 -0.68 18.93 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.45 6.46 -2.39 -0.02 1.44 16 45 H 0.06 1.32 7.47 -2.39 -0.02 1.30 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.05 1.55 5.65 -2.39 -0.01 1.53 16 53 H 0.04 1.21 7.85 -2.39 -0.02 1.19 16 Total: -1.00 -66.88 406.29 1.82 -65.06 By element: Atomic # 1 Polarization: 48.72 SS G_CDS: -0.58 Total: 48.13 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.21 Total: -9.28 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -3.12 Total: -117.48 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.70 Total: -33.41 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.88 1.82 -65.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496321304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.834 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds