Wall clock time and date at job start Tue Mar 31 2020 20:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99968 * 2 1 4 4 H 1.08995 * 109.47250 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46990 * 239.99591 * 3 2 1 6 6 C 1.53002 * 109.47005 * 65.00002 * 5 3 2 7 7 C 1.53006 * 109.46996 * 119.99920 * 3 2 1 8 8 C 1.50694 * 109.47126 * 294.99683 * 7 3 2 9 9 O 1.21289 * 120.00170 * 0.02562 * 8 7 3 10 10 N 1.34771 * 120.00533 * 180.02562 * 8 7 3 11 11 C 1.46922 * 120.64575 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89808 * 233.72985 * 11 10 8 13 13 C 1.52988 * 109.34647 * 305.36396 * 12 11 10 14 14 C 1.52991 * 109.63394 * 61.20899 * 13 12 11 15 15 C 1.47208 * 120.81423 * 0.14182 * 10 8 7 16 16 C 1.53262 * 109.39722 * 181.12893 * 13 12 11 17 17 N 1.47148 * 108.40715 * 67.82858 * 16 13 12 18 18 C 1.36938 * 120.98412 * 230.49473 * 17 16 13 19 19 H 1.08004 * 120.00108 * 153.33825 * 18 17 16 20 20 C 1.38808 * 120.00205 * 333.33946 * 18 17 16 21 21 N 1.31623 * 119.99503 * 343.54761 * 20 18 17 22 22 Si 1.86799 * 120.00507 * 163.54534 * 20 18 17 23 23 H 1.48507 * 109.46672 * 60.00193 * 22 20 18 24 24 H 1.48500 * 109.47353 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47219 * 300.00460 * 22 20 18 26 26 C 1.47153 * 118.03341 * 50.46814 * 17 16 13 27 27 C 1.53299 * 108.37241 * 309.41484 * 26 17 16 28 28 O 1.42895 * 109.56162 * 300.95944 * 13 12 11 29 29 H 1.07994 * 120.00052 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99732 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00240 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47514 * 185.00248 * 5 3 2 33 33 H 1.09004 * 109.47431 * 305.00138 * 5 3 2 34 34 H 1.09002 * 109.46930 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47037 * 299.99746 * 6 5 3 36 36 H 1.08997 * 109.47203 * 60.00004 * 6 5 3 37 37 H 1.08998 * 109.46587 * 174.99953 * 7 3 2 38 38 H 1.08998 * 109.46955 * 55.00195 * 7 3 2 39 39 H 1.08997 * 109.58699 * 113.86379 * 11 10 8 40 40 H 1.09004 * 109.57935 * 353.58565 * 11 10 8 41 41 H 1.09004 * 109.49132 * 65.32232 * 12 11 10 42 42 H 1.08997 * 109.49353 * 185.37512 * 12 11 10 43 43 H 1.08997 * 109.49322 * 58.74558 * 14 13 12 44 44 H 1.09002 * 109.49352 * 178.79486 * 14 13 12 45 45 H 1.09000 * 109.53861 * 6.47842 * 15 10 8 46 46 H 1.09000 * 109.67835 * 246.17190 * 15 10 8 47 47 H 1.08996 * 109.67409 * 187.55315 * 16 13 12 48 48 H 1.08998 * 109.67783 * 308.05575 * 16 13 12 49 49 H 0.97012 * 119.99855 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.67687 * 69.12883 * 26 17 16 51 51 H 1.08995 * 109.69177 * 189.68719 * 26 17 16 52 52 H 1.09006 * 109.51209 * 172.27185 * 27 26 17 53 53 H 1.09002 * 109.51100 * 292.41829 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0565 1.4306 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0698 1.4301 2.4766 9 8 0.8626 1.3992 2.3633 10 7 2.6300 1.5038 3.7001 11 6 1.7919 1.5469 4.9061 12 6 2.1881 2.7678 5.7423 13 6 3.6909 2.7223 6.0253 14 6 4.4640 2.7671 4.7058 15 6 4.0929 1.5455 3.8584 16 6 4.0836 3.9284 6.8855 17 7 3.4791 3.7658 8.2172 18 6 2.7542 4.7763 8.7905 19 1 1.9839 4.5463 9.5118 20 6 3.0093 6.0961 8.4446 21 7 4.1315 6.4110 7.8331 22 14 1.7601 7.4254 8.8469 23 1 1.5453 7.4746 10.3155 24 1 2.2672 8.7398 8.3771 25 1 0.4752 7.1188 8.1687 26 6 3.6761 2.4850 8.9145 27 6 3.3001 1.3498 7.9552 28 8 4.0096 1.5181 6.7255 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 3.5542 2.2878 -1.2056 33 1 3.5907 0.5104 -1.2951 34 1 2.6833 1.4888 -3.3852 35 1 1.4457 0.5290 -2.5389 36 1 1.4091 2.3063 -2.4495 37 1 3.5540 2.2878 1.2056 38 1 3.5906 0.5105 1.2952 39 1 1.9446 0.6391 5.4898 40 1 0.7431 1.6250 4.6195 41 1 1.9489 3.6782 5.1926 42 1 1.6398 2.7570 6.6842 43 1 4.2068 3.6774 4.1643 44 1 5.5345 2.7562 4.9110 45 1 4.5636 1.6239 2.8784 46 1 4.4343 0.6379 4.3561 47 1 5.1686 3.9752 6.9783 48 1 3.7149 4.8442 6.4237 49 1 4.3097 7.3333 7.5910 50 1 4.7204 2.3849 9.2103 51 1 3.0384 2.4457 9.7976 52 1 3.5678 0.3921 8.4018 53 1 2.2275 1.3757 7.7631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700331968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:26 Heat of formation + Delta-G solvation = -44.601063 kcal Electronic energy + Delta-G solvation = -31203.831791 eV Core-core repulsion = 27269.391537 eV Total energy + Delta-G solvation = -3934.440254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.35962 -39.06262 -36.98757 -35.86723 -34.38510 -32.38636 -31.84576 -31.46214 -31.19645 -29.96227 -28.22491 -26.58019 -25.00715 -23.49712 -23.28601 -22.58483 -21.77557 -20.90990 -19.79617 -19.14499 -18.45296 -17.00706 -16.86946 -15.83439 -15.70352 -15.47184 -14.91352 -14.77829 -14.66034 -14.45056 -14.23305 -13.95246 -13.76654 -13.59475 -13.46782 -13.29062 -12.89520 -12.76258 -12.57105 -12.27255 -12.01356 -11.98842 -11.80825 -11.50976 -11.41675 -11.34222 -11.02597 -10.98217 -10.92393 -10.83413 -10.66637 -10.60479 -10.58878 -10.28742 -10.17353 -9.92633 -9.70157 -9.39839 -9.10528 -9.00274 -8.53330 -8.34047 -6.72488 -5.85047 -3.28459 2.41143 2.82036 3.17015 3.34185 3.40301 3.41459 4.31953 4.43634 4.49127 4.62168 4.71510 4.94764 5.02603 5.10202 5.16315 5.23124 5.32952 5.33127 5.34016 5.39057 5.42889 5.51760 5.55814 5.64113 5.65870 5.72842 5.73919 5.78548 5.83621 5.87139 5.92940 5.96340 6.00234 6.05123 6.16037 6.17352 6.21807 6.26047 6.38747 6.52841 6.58337 6.69648 6.70810 6.79138 6.89618 6.90829 7.08932 7.47977 7.62315 7.70189 7.95052 8.33382 8.36824 9.11211 9.74158 10.31508 11.22631 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.002946 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.159065 B = 9503.502165 C =10091.556348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.541 6.541 10 N -0.608 5.608 11 C 0.118 3.882 12 C -0.145 4.145 13 C 0.096 3.904 14 C -0.116 4.116 15 C 0.113 3.887 16 C 0.159 3.841 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.046 3.954 28 O -0.382 6.382 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.026 0.974 48 H 0.092 0.908 49 H 0.255 0.745 50 H 0.024 0.976 51 H 0.060 0.940 52 H 0.078 0.922 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -12.157 -15.196 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.341 5.341 11 C -0.005 4.005 12 C -0.183 4.183 13 C 0.055 3.945 14 C -0.155 4.155 15 C -0.009 4.009 16 C 0.033 3.967 17 N -0.316 5.316 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.016 4.016 27 C -0.032 4.032 28 O -0.302 6.302 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.110 0.890 49 H 0.065 0.935 50 H 0.042 0.958 51 H 0.078 0.922 52 H 0.097 0.903 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.397 -12.117 -15.350 19.560 hybrid contribution -0.592 0.983 0.633 1.310 sum -0.989 -11.134 -14.716 18.480 Atomic orbital electron populations 1.23674 0.95940 1.01205 0.99341 1.22614 0.95967 0.97034 1.01200 1.20168 0.96602 0.97039 0.92541 0.90102 1.21544 0.97861 1.01960 0.94012 1.21757 0.99826 1.02112 0.97116 1.21736 0.98738 1.04091 0.92775 1.20594 0.88954 0.76090 0.84348 1.90677 1.14800 1.50144 1.86221 1.48225 1.07324 1.72609 1.05976 1.21540 0.95315 0.98652 0.84950 1.22303 0.97702 0.97592 1.00711 1.22136 0.92915 0.87787 0.91632 1.21839 1.00993 0.97971 0.94683 1.21740 0.79518 0.99593 1.00083 1.21357 0.95884 0.94731 0.84750 1.44033 1.61591 1.11453 1.14549 1.19123 1.10974 0.85171 1.22960 0.91561 1.25027 0.96344 0.97251 1.00886 1.70012 1.22110 1.17832 1.44803 0.86371 0.81115 0.81095 0.78224 1.20857 1.21561 1.20943 1.21586 0.98435 0.87204 0.94413 1.23008 0.95841 0.98558 0.85774 1.87760 1.66473 1.41148 1.34779 0.89371 0.88654 0.88237 0.91761 0.91889 0.92982 0.92457 0.92808 0.88812 0.89075 0.91790 0.89792 0.91290 0.89377 0.90423 0.90104 0.90392 0.90676 0.95630 0.88973 0.93512 0.95781 0.92183 0.90347 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 13.22 29.01 0.38 -1.48 16 2 C -0.15 -1.60 6.76 -36.02 -0.24 -1.84 16 3 C -0.04 -0.45 1.82 -91.77 -0.17 -0.61 16 4 H 0.08 0.95 7.60 -51.93 -0.39 0.56 16 5 C -0.12 -0.91 5.39 -26.73 -0.14 -1.05 16 6 C -0.15 -1.15 9.73 37.16 0.36 -0.79 16 7 C -0.13 -1.35 3.52 -27.88 -0.10 -1.45 16 8 C 0.51 7.21 7.45 -10.99 -0.08 7.13 16 9 O -0.54 -9.24 13.58 5.55 0.08 -9.17 16 10 N -0.61 -8.63 2.98 -172.52 -0.51 -9.14 16 11 C 0.12 1.86 6.19 -3.71 -0.02 1.84 16 12 C -0.14 -2.59 4.33 -26.64 -0.12 -2.70 16 13 C 0.10 1.74 0.68 -90.49 -0.06 1.68 16 14 C -0.12 -1.73 5.11 -26.61 -0.14 -1.86 16 15 C 0.11 1.40 6.12 -3.53 -0.02 1.38 16 16 C 0.16 3.63 4.09 -3.55 -0.01 3.62 16 17 N -0.59 -14.36 2.55 -171.85 -0.44 -14.80 16 18 C -0.25 -6.73 9.65 -15.06 -0.15 -6.88 16 19 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.55 11.14 55.49 0.62 -24.93 16 22 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.11 2.25 6.73 -3.53 -0.02 2.23 16 27 C 0.05 0.80 6.60 37.31 0.25 1.04 16 28 O -0.38 -6.88 9.00 -35.23 -0.32 -7.19 16 29 H 0.09 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.10 1.16 7.83 -52.49 -0.41 0.75 16 31 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.82 7.70 -51.93 -0.40 0.42 16 38 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 39 H 0.06 1.00 7.83 -51.93 -0.41 0.59 16 40 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 46 H 0.07 0.95 7.83 -51.93 -0.41 0.54 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 49 H 0.25 7.01 8.31 -40.81 -0.34 6.67 16 50 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 52 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 53 H 0.05 0.79 6.29 -51.93 -0.33 0.47 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -30.37 399.87 -9.44 -39.81 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.49 Total: 2.77 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.37 Total: 0.26 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.33 Total: -48.87 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.24 Total: -16.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.37 -9.44 -39.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.789 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds