Wall clock time and date at job start Tue Mar 31 2020 20:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99968 * 2 1 4 4 H 1.08995 * 109.47250 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46990 * 239.99591 * 3 2 1 6 6 C 1.53002 * 109.47005 * 65.00002 * 5 3 2 7 7 C 1.53006 * 109.46996 * 119.99920 * 3 2 1 8 8 C 1.50694 * 109.47126 * 294.99683 * 7 3 2 9 9 O 1.21289 * 120.00170 * 0.02562 * 8 7 3 10 10 N 1.34771 * 120.00533 * 180.02562 * 8 7 3 11 11 C 1.46922 * 120.64575 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89808 * 233.72985 * 11 10 8 13 13 C 1.52988 * 109.34647 * 305.36396 * 12 11 10 14 14 C 1.52991 * 109.63394 * 61.20899 * 13 12 11 15 15 C 1.47208 * 120.81423 * 0.14182 * 10 8 7 16 16 C 1.53262 * 109.39722 * 181.12893 * 13 12 11 17 17 N 1.47148 * 108.40715 * 67.82858 * 16 13 12 18 18 C 1.36938 * 120.98412 * 230.49473 * 17 16 13 19 19 H 1.08004 * 120.00108 * 153.33825 * 18 17 16 20 20 C 1.38808 * 120.00205 * 333.33946 * 18 17 16 21 21 N 1.31623 * 119.99503 * 343.54761 * 20 18 17 22 22 Si 1.86799 * 120.00507 * 163.54534 * 20 18 17 23 23 H 1.48507 * 109.46672 * 60.00193 * 22 20 18 24 24 H 1.48500 * 109.47353 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47219 * 300.00460 * 22 20 18 26 26 C 1.47153 * 118.03341 * 50.46814 * 17 16 13 27 27 C 1.53299 * 108.37241 * 309.41484 * 26 17 16 28 28 O 1.42895 * 109.56162 * 300.95944 * 13 12 11 29 29 H 1.07994 * 120.00052 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99732 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00240 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47514 * 185.00248 * 5 3 2 33 33 H 1.09004 * 109.47431 * 305.00138 * 5 3 2 34 34 H 1.09002 * 109.46930 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47037 * 299.99746 * 6 5 3 36 36 H 1.08997 * 109.47203 * 60.00004 * 6 5 3 37 37 H 1.08998 * 109.46587 * 174.99953 * 7 3 2 38 38 H 1.08998 * 109.46955 * 55.00195 * 7 3 2 39 39 H 1.08997 * 109.58699 * 113.86379 * 11 10 8 40 40 H 1.09004 * 109.57935 * 353.58565 * 11 10 8 41 41 H 1.09004 * 109.49132 * 65.32232 * 12 11 10 42 42 H 1.08997 * 109.49353 * 185.37512 * 12 11 10 43 43 H 1.08997 * 109.49322 * 58.74558 * 14 13 12 44 44 H 1.09002 * 109.49352 * 178.79486 * 14 13 12 45 45 H 1.09000 * 109.53861 * 6.47842 * 15 10 8 46 46 H 1.09000 * 109.67835 * 246.17190 * 15 10 8 47 47 H 1.08996 * 109.67409 * 187.55315 * 16 13 12 48 48 H 1.08998 * 109.67783 * 308.05575 * 16 13 12 49 49 H 0.97012 * 119.99855 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.67687 * 69.12883 * 26 17 16 51 51 H 1.08995 * 109.69177 * 189.68719 * 26 17 16 52 52 H 1.09006 * 109.51209 * 172.27185 * 27 26 17 53 53 H 1.09002 * 109.51100 * 292.41829 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0565 1.4306 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0698 1.4301 2.4766 9 8 0.8626 1.3992 2.3633 10 7 2.6300 1.5038 3.7001 11 6 1.7919 1.5469 4.9061 12 6 2.1881 2.7678 5.7423 13 6 3.6909 2.7223 6.0253 14 6 4.4640 2.7671 4.7058 15 6 4.0929 1.5455 3.8584 16 6 4.0836 3.9284 6.8855 17 7 3.4791 3.7658 8.2172 18 6 2.7542 4.7763 8.7905 19 1 1.9839 4.5463 9.5118 20 6 3.0093 6.0961 8.4446 21 7 4.1315 6.4110 7.8331 22 14 1.7601 7.4254 8.8469 23 1 1.5453 7.4746 10.3155 24 1 2.2672 8.7398 8.3771 25 1 0.4752 7.1188 8.1687 26 6 3.6761 2.4850 8.9145 27 6 3.3001 1.3498 7.9552 28 8 4.0096 1.5181 6.7255 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 3.5542 2.2878 -1.2056 33 1 3.5907 0.5104 -1.2951 34 1 2.6833 1.4888 -3.3852 35 1 1.4457 0.5290 -2.5389 36 1 1.4091 2.3063 -2.4495 37 1 3.5540 2.2878 1.2056 38 1 3.5906 0.5105 1.2952 39 1 1.9446 0.6391 5.4898 40 1 0.7431 1.6250 4.6195 41 1 1.9489 3.6782 5.1926 42 1 1.6398 2.7570 6.6842 43 1 4.2068 3.6774 4.1643 44 1 5.5345 2.7562 4.9110 45 1 4.5636 1.6239 2.8784 46 1 4.4343 0.6379 4.3561 47 1 5.1686 3.9752 6.9783 48 1 3.7149 4.8442 6.4237 49 1 4.3097 7.3333 7.5910 50 1 4.7204 2.3849 9.2103 51 1 3.0384 2.4457 9.7976 52 1 3.5678 0.3921 8.4018 53 1 2.2275 1.3757 7.7631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700331968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:25 Heat of formation + Delta-G solvation = -61.048723 kcal Electronic energy + Delta-G solvation = -31204.545015 eV Core-core repulsion = 27269.391537 eV Total energy + Delta-G solvation = -3935.153478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60782 -40.36989 -37.94974 -37.08312 -36.15116 -33.74880 -33.20175 -32.59025 -32.54859 -30.91805 -29.73227 -28.29793 -26.05436 -25.07056 -24.69037 -23.86989 -22.52612 -22.36944 -20.80777 -20.36126 -19.71832 -18.80361 -18.10972 -17.20609 -16.92091 -16.69590 -16.29726 -16.09912 -15.86309 -15.69222 -15.45259 -15.35136 -15.24288 -14.69582 -14.64707 -14.56407 -14.36855 -13.84168 -13.79420 -13.41731 -13.25664 -13.15869 -12.97269 -12.84372 -12.75809 -12.65667 -12.41158 -12.28340 -12.23697 -12.15262 -12.05069 -12.01301 -11.70035 -11.69683 -11.60709 -11.32331 -11.02939 -10.73235 -10.66950 -10.43446 -9.98784 -9.54806 -8.68909 -7.90467 -5.36802 1.42805 1.45262 1.51309 1.57348 1.76200 2.09043 2.45608 2.91067 3.22938 3.52481 3.58390 3.86259 3.87229 3.92389 3.98922 4.03358 4.15208 4.32425 4.34148 4.40022 4.42918 4.44880 4.48057 4.53250 4.60310 4.61260 4.68133 4.69567 4.78034 4.83697 4.86242 4.95426 4.98468 5.01663 5.04023 5.07772 5.10452 5.12450 5.16316 5.22384 5.28590 5.35659 5.42912 5.49877 5.54193 5.59308 5.64278 5.86040 6.09967 6.29986 6.44577 6.54789 7.07936 7.28762 7.77211 8.30474 9.14180 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.002946 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.159065 B = 9503.502165 C =10091.556348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.055 0.945 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.128 4.128 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.611 5.611 11 C 0.129 3.871 12 C -0.133 4.133 13 C 0.107 3.893 14 C -0.116 4.116 15 C 0.120 3.880 16 C 0.168 3.832 17 N -0.611 5.611 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.104 3.896 27 C 0.053 3.947 28 O -0.378 6.378 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.082 0.918 47 H -0.003 1.003 48 H 0.059 0.941 49 H 0.250 0.750 50 H 0.016 0.984 51 H 0.066 0.934 52 H 0.116 0.884 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -14.118 -16.501 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.167 4.167 8 C 0.296 3.704 9 O -0.457 6.457 10 N -0.344 5.344 11 C 0.006 3.994 12 C -0.172 4.172 13 C 0.066 3.934 14 C -0.154 4.154 15 C -0.001 4.001 16 C 0.042 3.958 17 N -0.335 5.335 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.021 4.021 27 C -0.025 4.025 28 O -0.297 6.297 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.015 0.985 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.084 0.916 52 H 0.134 0.866 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.647 -14.108 -16.652 21.834 hybrid contribution -0.917 1.590 1.119 2.149 sum -0.270 -12.519 -15.532 19.951 Atomic orbital electron populations 1.23680 0.96603 1.00785 1.01061 1.22851 0.95780 0.98022 0.99631 1.20165 0.96566 0.95760 0.93860 0.92639 1.21518 0.97542 1.03239 0.92465 1.21766 0.99916 1.01417 0.97851 1.21815 0.98334 1.06387 0.90163 1.21384 0.89016 0.74891 0.85147 1.90675 1.16703 1.51603 1.86698 1.48327 1.08016 1.72517 1.05512 1.21269 0.95048 0.97493 0.85582 1.22126 0.97309 0.97901 0.99859 1.21932 0.93444 0.85760 0.92290 1.21856 1.00974 0.99466 0.93113 1.21857 0.78322 0.98171 1.01798 1.21171 0.93783 0.95785 0.85084 1.44301 1.61463 1.12265 1.15491 1.19430 1.10997 0.86066 1.22556 0.91504 1.25721 0.97897 0.99170 1.01507 1.70161 1.23687 1.17739 1.46280 0.85423 0.78943 0.78421 0.78184 1.20095 1.21913 1.20708 1.21778 0.98138 0.86704 0.95481 1.23032 0.96007 0.98679 0.84757 1.87773 1.66621 1.40362 1.34914 0.88614 0.90471 0.86591 0.90705 0.90253 0.91701 0.93038 0.93750 0.86706 0.86161 0.91024 0.91090 0.93336 0.91483 0.90788 0.89240 0.86286 0.89940 0.98502 0.92310 0.94063 0.96572 0.91584 0.86602 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 13.22 67.78 0.90 -3.25 16 2 C -0.14 -2.83 6.76 25.65 0.17 -2.65 16 3 C -0.04 -0.80 1.82 -11.54 -0.02 -0.82 16 4 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 5 C -0.11 -1.38 5.39 30.59 0.16 -1.21 16 6 C -0.15 -2.04 9.73 71.98 0.70 -1.34 16 7 C -0.13 -2.11 3.52 29.85 0.11 -2.00 16 8 C 0.51 13.19 7.45 87.66 0.65 13.84 16 9 O -0.58 -19.46 13.58 -3.06 -0.04 -19.50 16 10 N -0.61 -15.95 2.98 -818.12 -2.44 -18.39 16 11 C 0.13 3.97 6.19 86.36 0.53 4.50 16 12 C -0.13 -4.81 4.33 30.65 0.13 -4.67 16 13 C 0.11 3.82 0.68 -10.71 -0.01 3.81 16 14 C -0.12 -3.23 5.11 30.67 0.16 -3.08 16 15 C 0.12 2.53 6.12 86.32 0.53 3.06 16 16 C 0.17 7.91 4.09 86.34 0.35 8.26 16 17 N -0.61 -30.23 2.55 -697.62 -1.78 -32.01 16 18 C -0.26 -14.16 9.65 84.03 0.81 -13.35 16 19 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 20 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 21 N -0.93 -54.54 11.14 21.65 0.24 -54.30 16 22 Si 0.96 44.89 29.58 68.60 2.03 46.92 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.10 4.24 6.73 86.35 0.58 4.82 16 27 C 0.05 1.73 6.60 72.08 0.48 2.20 16 28 O -0.38 -12.88 9.00 -148.98 -1.34 -14.22 16 29 H 0.10 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.08 1.98 7.83 -2.91 -0.02 1.96 16 31 H 0.12 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.74 7.38 -2.39 -0.02 0.72 16 36 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 1.48 7.70 -2.39 -0.02 1.47 16 38 H 0.12 1.37 7.96 -2.39 -0.02 1.35 16 39 H 0.07 2.10 7.83 -2.39 -0.02 2.08 16 40 H 0.07 2.38 7.00 -2.39 -0.02 2.36 16 41 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.07 2.68 6.16 -2.39 -0.01 2.66 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.12 1.59 5.97 -2.39 -0.01 1.57 16 46 H 0.08 1.71 7.83 -2.39 -0.02 1.69 16 47 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.06 3.15 6.16 -2.39 -0.01 3.14 16 49 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 50 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 52 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 53 H 0.05 1.59 6.29 -2.39 -0.02 1.58 16 Total: -1.00 -68.88 399.87 4.18 -64.69 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.86 Total: 20.88 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.66 Total: 5.92 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.98 Total: -104.70 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.38 Total: -33.72 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.88 4.18 -64.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.644 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds