Wall clock time and date at job start Tue Mar 31 2020 20:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47467 * 2 1 4 4 N 1.46510 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.34772 * 119.99691 * 90.00216 * 4 3 2 6 6 O 1.21286 * 119.99827 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.00483 * 359.97438 * 5 4 3 8 8 H 1.08996 * 115.58780 * 306.91608 * 7 5 4 9 9 C 1.53180 * 117.52333 * 161.09731 * 7 5 4 10 10 C 1.52126 * 59.77696 * 252.57841 * 9 7 5 11 11 C 1.54043 * 121.46737 * 110.86552 * 10 9 7 12 12 C 1.55180 * 101.82920 * 164.26634 * 11 10 9 13 13 O 1.44461 * 103.63233 * 323.67191 * 12 11 10 14 14 C 1.43989 * 107.04177 * 39.57711 * 13 12 11 15 15 C 1.46495 * 119.99723 * 270.00082 * 4 3 2 16 16 C 1.53037 * 109.46257 * 60.07054 * 15 4 3 17 17 C 1.53195 * 109.31530 * 178.61344 * 16 15 4 18 18 N 1.46933 * 108.77537 * 54.63264 * 17 16 15 19 19 C 1.36932 * 120.62739 * 126.37282 * 18 17 16 20 20 H 1.08007 * 119.99565 * 208.93843 * 19 18 17 21 21 C 1.38808 * 120.00468 * 28.94212 * 19 18 17 22 22 N 1.31621 * 119.99632 * 19.07375 * 21 19 18 23 23 Si 1.86797 * 120.00034 * 199.07516 * 21 19 18 24 24 H 1.48504 * 109.47036 * 84.97547 * 23 21 19 25 25 H 1.48504 * 109.46999 * 204.97424 * 23 21 19 26 26 H 1.48496 * 109.47338 * 324.97199 * 23 21 19 27 27 C 1.46926 * 118.73533 * 306.39357 * 18 17 16 28 28 C 1.53048 * 109.46272 * 299.99827 * 15 4 3 29 29 H 1.08995 * 109.47612 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46799 * 300.00054 * 1 2 3 31 31 H 1.08997 * 109.46526 * 59.99693 * 1 2 3 32 32 H 1.09005 * 109.47160 * 240.00268 * 2 1 3 33 33 H 1.09004 * 109.47172 * 120.00179 * 2 1 3 34 34 H 1.09001 * 109.47155 * 60.00164 * 3 2 1 35 35 H 1.08997 * 109.47498 * 299.99711 * 3 2 1 36 36 H 1.08992 * 117.52282 * 145.15068 * 9 7 5 37 37 H 1.09001 * 117.51784 * 0.02562 * 9 7 5 38 38 H 1.08998 * 110.95804 * 282.39572 * 11 10 9 39 39 H 1.08996 * 110.95505 * 46.13036 * 11 10 9 40 40 H 1.08996 * 110.59495 * 82.20795 * 12 11 10 41 41 H 1.08998 * 110.59305 * 204.98494 * 12 11 10 42 42 H 1.08997 * 109.97041 * 214.31396 * 14 13 12 43 43 H 1.08999 * 109.97122 * 93.05201 * 14 13 12 44 44 H 1.09008 * 109.45876 * 180.02562 * 15 4 3 45 45 H 1.09001 * 109.49311 * 298.56321 * 16 15 4 46 46 H 1.08997 * 109.50075 * 58.66064 * 16 15 4 47 47 H 1.09005 * 109.58640 * 294.85129 * 17 16 15 48 48 H 1.08993 * 109.70489 * 174.48729 * 17 16 15 49 49 H 0.97003 * 119.99423 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58988 * 293.81816 * 27 18 17 51 51 H 1.09007 * 109.58304 * 173.39375 * 27 18 17 52 52 H 1.09000 * 109.49463 * 301.34274 * 28 15 4 53 53 H 1.09005 * 109.49453 * 61.40298 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5052 1.4423 -0.0006 5 6 4.1785 1.4425 -1.1681 6 8 5.3913 1.4429 -1.1686 7 6 3.4245 1.4422 -2.4729 8 1 2.6779 0.6560 -2.5850 9 6 4.1829 1.8825 -3.7288 10 6 3.1280 2.7898 -3.1138 11 6 3.5094 4.1111 -2.4198 12 6 2.1404 4.8380 -2.3452 13 8 1.4892 4.4651 -3.5796 14 6 1.7962 3.0784 -3.8165 15 6 4.2381 1.4421 1.2678 16 6 3.8698 0.1915 2.0693 17 6 4.6640 0.1771 3.3792 18 7 4.4267 1.4409 4.0900 19 6 3.9934 1.4401 5.3890 20 1 3.3930 2.2583 5.7585 21 6 4.3259 0.3878 6.2309 22 7 5.3354 -0.4016 5.9305 23 14 3.3407 0.0920 7.7902 24 1 2.1440 -0.7275 7.4716 25 1 4.1836 -0.6266 8.7794 26 1 2.9115 1.3947 8.3592 27 6 4.6628 2.7056 3.3804 28 6 3.8686 2.6917 2.0705 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9352 1.3858 -4.6668 37 1 5.2272 2.1719 -3.6110 38 1 3.9076 3.9266 -1.4221 39 1 4.2191 4.6774 -3.0228 40 1 1.5662 4.4871 -1.4877 41 1 2.2818 5.9176 -2.2946 42 1 1.8927 2.8960 -4.8868 43 1 1.0112 2.4469 -3.4004 44 1 5.3097 1.4425 1.0680 45 1 2.8026 0.2027 2.2909 46 1 4.1117 -0.6979 1.4874 47 1 5.7270 0.0746 3.1610 48 1 4.3360 -0.6576 3.9987 49 1 5.5675 -1.1372 6.5187 50 1 5.7257 2.8093 3.1622 51 1 4.3317 3.5394 3.9996 52 1 4.1097 3.5818 1.4894 53 1 2.8013 2.6796 2.2916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713857646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:00 Heat of formation + Delta-G solvation = -56.471446 kcal Electronic energy + Delta-G solvation = -31591.336501 eV Core-core repulsion = 27656.381508 eV Total energy + Delta-G solvation = -3934.954993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.89359 -40.37403 -39.02864 -37.18933 -36.79941 -34.76941 -33.47864 -31.96409 -31.39599 -31.25162 -28.54228 -27.43797 -27.03668 -25.27139 -24.10021 -23.74593 -23.14963 -22.43755 -21.14943 -20.58531 -19.67065 -18.77489 -18.16551 -17.52690 -17.36965 -16.94748 -16.70915 -16.00053 -15.86581 -15.71300 -15.57019 -15.39911 -15.12347 -14.76266 -14.55662 -14.34856 -14.18481 -14.13617 -13.65005 -13.52092 -13.36401 -13.23115 -13.14861 -12.96918 -12.88420 -12.61799 -12.52473 -12.44500 -12.25960 -12.15407 -12.03387 -11.96830 -11.88954 -11.49920 -11.45916 -11.41759 -11.27051 -11.12557 -10.72223 -10.57200 -10.53886 -9.63591 -8.73310 -7.89986 -5.35943 1.43536 1.47406 1.48530 1.57253 1.89488 2.50477 2.63123 2.94588 3.19206 3.25618 3.59170 3.59708 3.63192 3.73562 3.90022 3.95734 3.99317 4.01764 4.18770 4.21730 4.29259 4.39761 4.41089 4.44157 4.48789 4.53234 4.61794 4.65196 4.73352 4.74704 4.76789 4.81223 4.84806 4.86494 4.94344 4.96455 4.98710 5.01138 5.02285 5.09281 5.10932 5.21250 5.25043 5.28566 5.38636 5.48695 5.61663 5.62974 5.66711 5.85427 6.36313 6.43639 7.11373 7.14971 7.81311 8.35575 9.17228 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.003106 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.458977 B = 9013.375591 C = 9213.650987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.109 3.891 4 N -0.594 5.594 5 C 0.538 3.462 6 O -0.588 6.588 7 C -0.170 4.170 8 H 0.153 0.847 9 C -0.126 4.126 10 C -0.132 4.132 11 C -0.127 4.127 12 C 0.053 3.947 13 O -0.392 6.392 14 C 0.086 3.914 15 C 0.155 3.845 16 C -0.124 4.124 17 C 0.183 3.817 18 N -0.606 5.606 19 C -0.265 4.265 20 H 0.071 0.929 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.267 1.267 27 C 0.144 3.856 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.053 0.947 47 H -0.013 1.013 48 H 0.055 0.945 49 H 0.250 0.750 50 H 0.005 0.995 51 H 0.064 0.936 52 H 0.071 0.929 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 5.670 -21.414 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C -0.013 4.013 4 N -0.324 5.324 5 C 0.328 3.672 6 O -0.469 6.469 7 C -0.191 4.191 8 H 0.170 0.830 9 C -0.163 4.163 10 C -0.132 4.132 11 C -0.165 4.165 12 C -0.023 4.023 13 O -0.311 6.311 14 C 0.009 3.991 15 C 0.052 3.948 16 C -0.164 4.164 17 C 0.056 3.944 18 N -0.329 5.329 19 C -0.395 4.395 20 H 0.088 0.912 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.192 1.192 27 C 0.018 3.982 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.023 0.977 51 H 0.082 0.918 52 H 0.089 0.911 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.673 5.715 -21.431 25.064 hybrid contribution 0.624 -0.805 1.590 1.888 sum -11.049 4.910 -19.842 23.235 Atomic orbital electron populations 1.21661 0.93491 1.02412 1.02614 1.22101 0.97527 0.96503 1.02436 1.21815 0.77495 0.97858 1.04153 1.48122 1.07840 1.71645 1.04747 1.20240 0.86911 0.74557 0.85498 1.90678 1.16147 1.52204 1.87874 1.22328 1.04684 1.00835 0.91261 0.82966 1.23048 0.97020 1.00292 0.95959 1.22252 0.99028 0.90282 1.01680 1.22644 0.98975 0.94451 1.00399 1.23602 0.90540 1.00993 0.87180 1.88914 1.73781 1.26703 1.41748 1.22705 0.92301 0.82868 1.01183 1.20764 0.95944 0.95615 0.82503 1.22352 1.01123 0.96554 0.96349 1.20476 0.94041 0.89354 0.90481 1.44305 1.77956 1.00648 1.10038 1.19511 1.24970 1.07469 0.87513 0.91158 1.25844 0.97423 1.00321 1.00811 1.70226 1.27592 1.20344 1.39939 0.85289 0.77987 0.78148 0.79057 1.20841 1.22488 1.19180 1.20995 0.95664 0.89017 0.92563 1.22147 1.01198 0.96535 0.96017 0.92233 0.92793 0.90851 0.91481 0.92754 0.90056 0.88290 0.84622 0.89367 0.91874 0.89793 0.91191 0.87752 0.87568 0.90003 0.91990 0.90976 0.92823 0.99483 0.92696 0.94115 0.97726 0.91786 0.91067 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.15 -2.77 5.98 30.59 0.18 -2.58 16 3 C 0.11 2.14 4.63 86.38 0.40 2.53 16 4 N -0.59 -15.98 2.40 -797.66 -1.91 -17.90 16 5 C 0.54 15.16 6.01 87.66 0.53 15.69 16 6 O -0.59 -22.26 15.77 -3.05 -0.05 -22.31 16 7 C -0.17 -3.14 4.28 -11.76 -0.05 -3.19 16 8 H 0.15 2.05 7.35 -2.39 -0.02 2.03 16 9 C -0.13 -2.09 9.82 30.37 0.30 -1.79 16 10 C -0.13 -2.06 2.26 -52.29 -0.12 -2.18 16 11 C -0.13 -2.29 6.74 31.69 0.21 -2.08 16 12 C 0.05 0.81 7.73 72.73 0.56 1.37 16 13 O -0.39 -6.78 11.53 -148.98 -1.72 -8.50 16 14 C 0.09 1.07 7.50 72.09 0.54 1.61 16 15 C 0.16 5.38 2.48 45.02 0.11 5.49 16 16 C -0.12 -4.71 4.24 30.67 0.13 -4.58 16 17 C 0.18 9.03 5.32 86.36 0.46 9.49 16 18 N -0.61 -30.47 2.99 -699.08 -2.09 -32.56 16 19 C -0.26 -14.41 9.56 84.03 0.80 -13.60 16 20 H 0.07 3.69 7.90 -2.91 -0.02 3.66 16 21 C -0.05 -2.69 4.85 84.86 0.41 -2.28 16 22 N -0.94 -55.97 11.40 21.65 0.25 -55.73 16 23 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.14 6.01 6.52 86.36 0.56 6.58 16 28 C -0.12 -3.94 5.31 30.67 0.16 -3.78 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.16 7.40 -2.38 -0.02 1.15 16 33 H 0.05 1.32 5.47 -2.39 -0.01 1.30 16 34 H 0.08 1.68 6.46 -2.39 -0.02 1.66 16 35 H 0.10 1.46 6.72 -2.39 -0.02 1.45 16 36 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.90 7.81 -2.39 -0.02 1.88 16 38 H 0.06 1.41 6.93 -2.39 -0.02 1.39 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 2.59 6.90 -2.38 -0.02 2.57 16 45 H 0.07 2.61 6.30 -2.39 -0.02 2.60 16 46 H 0.05 1.98 8.13 -2.39 -0.02 1.96 16 47 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H 0.05 3.03 6.19 -2.39 -0.01 3.01 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 50 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 52 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 53 H 0.07 2.29 6.72 -2.38 -0.02 2.28 16 Total: -1.00 -70.50 402.35 3.30 -67.20 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.88 Total: 18.01 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.91 Total: 5.33 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.75 Total: -106.18 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.77 Total: -30.81 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.50 3.30 -67.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713857646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.728 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds