Wall clock time and date at job start Tue Mar 31 2020 21:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47004 * 2 1 4 4 N 1.46505 * 109.47051 * 174.68406 * 3 2 1 5 5 C 1.34777 * 119.99481 * 273.02286 * 4 3 2 6 6 O 1.21286 * 119.99645 * 184.94348 * 5 4 3 7 7 C 1.50697 * 120.00639 * 4.94400 * 5 4 3 8 8 H 1.09001 * 110.74875 * 44.13545 * 7 5 4 9 9 C 1.55304 * 110.84960 * 280.66329 * 7 5 4 10 10 C 1.54943 * 100.94318 * 207.67291 * 9 7 5 11 11 O 1.43650 * 105.13362 * 36.44376 * 10 9 7 12 12 C 1.43585 * 110.01086 * 335.38928 * 11 10 9 13 13 H 1.08995 * 109.79568 * 121.38169 * 12 11 10 14 14 C 1.52996 * 110.03950 * 242.46745 * 12 11 10 15 15 C 1.52996 * 117.50302 * 6.79076 * 14 12 11 16 16 C 1.52993 * 117.50160 * 298.12810 * 14 12 11 17 17 C 1.46498 * 120.00152 * 93.02560 * 4 3 2 18 18 H 1.08998 * 110.64008 * 182.87198 * 17 4 3 19 19 C 1.55157 * 110.71725 * 306.01096 * 17 4 3 20 20 C 1.54911 * 101.58233 * 154.04383 * 19 17 4 21 21 N 1.47435 * 104.92602 * 322.93888 * 20 19 17 22 22 C 1.36934 * 125.64773 * 204.15687 * 21 20 19 23 23 H 1.07998 * 120.00391 * 180.02562 * 22 21 20 24 24 C 1.38819 * 120.00004 * 0.02562 * 22 21 20 25 25 N 1.31626 * 119.99786 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00157 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47112 * 90.00017 * 26 24 22 28 28 H 1.48501 * 109.47540 * 210.00220 * 26 24 22 29 29 H 1.48501 * 109.47217 * 330.00472 * 26 24 22 30 30 C 1.47284 * 108.55819 * 24.15183 * 21 20 19 31 31 H 1.09003 * 109.47012 * 300.00050 * 1 2 3 32 32 H 1.08995 * 109.47238 * 60.00265 * 1 2 3 33 33 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47312 * 239.99876 * 2 1 3 35 35 H 1.09008 * 109.47074 * 119.99639 * 2 1 3 36 36 H 1.08998 * 109.47370 * 54.68401 * 3 2 1 37 37 H 1.09000 * 109.46916 * 294.68003 * 3 2 1 38 38 H 1.09006 * 111.12373 * 325.59563 * 9 7 5 39 39 H 1.09000 * 111.12475 * 89.70945 * 9 7 5 40 40 H 1.09003 * 110.30610 * 155.36007 * 10 9 7 41 41 H 1.08998 * 110.30972 * 277.52852 * 10 9 7 42 42 H 1.09003 * 115.55101 * 152.45953 * 14 12 11 43 43 H 1.09003 * 117.49809 * 359.97438 * 15 14 12 44 44 H 1.08999 * 117.50424 * 145.01716 * 15 14 12 45 45 H 1.09004 * 117.50463 * 214.98124 * 16 14 12 46 46 H 1.09001 * 117.49923 * 0.02562 * 16 14 12 47 47 H 1.09006 * 111.00280 * 35.97334 * 19 17 4 48 48 H 1.09001 * 111.01006 * 272.11783 * 19 17 4 49 49 H 1.08996 * 110.36787 * 81.82494 * 20 19 17 50 50 H 1.08998 * 110.36721 * 204.04717 * 20 19 17 51 51 H 0.96997 * 119.99578 * 179.97438 * 25 24 22 52 52 H 1.09001 * 109.86003 * 239.50291 * 30 21 20 53 53 H 1.08997 * 110.00396 * 118.43302 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4995 1.4445 0.1280 5 6 4.0688 1.4199 1.3494 6 8 5.2731 1.5120 1.4589 7 6 3.2090 1.2779 2.5788 8 1 2.4486 0.5109 2.4319 9 6 2.5581 2.6361 2.9580 10 6 2.3842 2.4620 4.4878 11 8 3.5415 1.7262 4.9155 12 6 4.0723 0.9650 3.8198 13 1 5.1060 1.2566 3.6343 14 6 4.0021 -0.5300 4.1374 15 6 3.2706 -0.9474 5.4147 16 6 4.7972 -1.0342 5.3434 17 6 4.3399 1.4733 -1.0716 18 1 5.3949 1.4198 -0.8029 19 6 3.9598 0.3188 -2.0360 20 6 4.4057 0.8957 -3.4028 21 7 4.0881 2.3336 -3.3298 22 6 3.8626 3.1564 -4.4009 23 1 3.6366 4.2004 -4.2418 24 6 3.9246 2.6487 -5.6914 25 7 4.1996 1.3761 -5.8854 26 14 3.6178 3.7712 -7.1526 27 1 4.9024 4.3720 -7.5935 28 1 3.0311 2.9843 -8.2669 29 1 2.6763 4.8500 -6.7589 30 6 4.0541 2.7349 -1.9131 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6010 1.9831 0.8385 37 1 1.7565 1.9280 -0.9338 38 1 3.2245 3.4682 2.7305 39 1 1.5946 2.7614 2.4641 40 1 2.3520 3.4350 4.9780 41 1 1.4765 1.8985 4.7036 42 1 3.9241 -1.1909 3.2741 43 1 2.8398 -0.1568 6.0292 44 1 2.7117 -1.8829 5.3920 45 1 5.2421 -2.0269 5.2737 46 1 5.3701 -0.3007 5.9108 47 1 2.8855 0.1351 -2.0212 48 1 4.5132 -0.5891 -1.7959 49 1 5.4766 0.7506 -3.5447 50 1 3.8490 0.4249 -4.2130 51 1 4.2425 1.0213 -6.7871 52 1 3.0698 3.1314 -1.6640 53 1 4.8169 3.4893 -1.7209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714870085.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:14 Heat of formation + Delta-G solvation = -42.535969 kcal Electronic energy + Delta-G solvation = -31271.068432 eV Core-core repulsion = 27336.717727 eV Total energy + Delta-G solvation = -3934.350705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95482 -40.32952 -38.84866 -37.26947 -37.00283 -34.62317 -33.52894 -33.17146 -31.08021 -30.30612 -29.05594 -27.27346 -26.62712 -25.00563 -23.68905 -23.20785 -22.68342 -21.96339 -21.72459 -21.00401 -19.96879 -18.98657 -18.86997 -17.74071 -17.48668 -16.76388 -16.39771 -16.29226 -16.04476 -15.80041 -15.70456 -15.51227 -15.03881 -14.76966 -14.45667 -14.34391 -14.01787 -13.80342 -13.63385 -13.52836 -13.31637 -13.08453 -13.00949 -12.82384 -12.73772 -12.57452 -12.48872 -12.33950 -12.24645 -12.17383 -12.05835 -12.01866 -11.98040 -11.78289 -11.45819 -11.28994 -11.17547 -11.03173 -10.81946 -10.75896 -10.41220 -9.70801 -8.93633 -7.79159 -5.25012 1.45406 1.46819 1.48712 1.57104 1.80520 2.48779 2.73660 2.88737 3.30941 3.36978 3.42753 3.58380 3.66848 3.82905 3.85898 3.95005 3.99457 4.06066 4.10197 4.14909 4.18301 4.22354 4.27439 4.38712 4.41552 4.46968 4.52391 4.63920 4.66626 4.72542 4.81283 4.83394 4.84637 4.88838 4.93936 4.96948 5.00913 5.03232 5.05306 5.10682 5.22342 5.23479 5.32700 5.36437 5.43012 5.46695 5.58237 5.61958 5.75264 6.02067 6.26533 6.37641 7.05803 7.07533 7.72883 8.37181 9.22419 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002808 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.217202 B = 9969.419988 C =10072.712288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.098 3.902 4 N -0.589 5.589 5 C 0.523 3.477 6 O -0.582 6.582 7 C -0.127 4.127 8 H 0.135 0.865 9 C -0.143 4.143 10 C 0.052 3.948 11 O -0.388 6.388 12 C 0.125 3.875 13 H 0.071 0.929 14 C -0.181 4.181 15 C -0.150 4.150 16 C -0.180 4.180 17 C 0.142 3.858 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.156 3.844 21 N -0.620 5.620 22 C -0.240 4.240 23 H 0.080 0.920 24 C -0.063 4.063 25 N -0.947 5.947 26 Si 0.981 3.019 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.267 1.267 30 C 0.131 3.869 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.074 0.926 49 H -0.018 1.018 50 H 0.082 0.918 51 H 0.248 0.752 52 H 0.043 0.957 53 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -4.065 22.504 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.024 4.024 4 N -0.319 5.319 5 C 0.313 3.687 6 O -0.462 6.462 7 C -0.148 4.148 8 H 0.153 0.847 9 C -0.180 4.180 10 C -0.024 4.024 11 O -0.308 6.308 12 C 0.067 3.933 13 H 0.088 0.912 14 C -0.199 4.199 15 C -0.186 4.186 16 C -0.217 4.217 17 C 0.037 3.963 18 H 0.099 0.901 19 C -0.174 4.174 20 C 0.031 3.969 21 N -0.347 5.347 22 C -0.368 4.368 23 H 0.098 0.902 24 C -0.256 4.256 25 N -0.597 5.597 26 Si 0.809 3.191 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.192 1.192 30 C 0.005 3.995 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.000 1.000 50 H 0.100 0.900 51 H 0.058 0.942 52 H 0.060 0.940 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -10.169 -3.991 22.554 25.061 hybrid contribution 0.685 0.559 -1.661 1.881 sum -9.484 -3.432 20.894 23.201 Atomic orbital electron populations 1.21685 0.93367 1.02659 1.02643 1.22137 0.97638 0.95836 1.02687 1.22019 0.77455 0.98612 1.04303 1.47909 1.07819 1.71783 1.04399 1.20788 0.88128 0.74868 0.84964 1.90677 1.17151 1.51738 1.86658 1.22885 0.98471 1.01931 0.91528 0.84690 1.23360 1.02762 0.94332 0.97574 1.23572 0.88975 0.97366 0.92497 1.88453 1.45527 1.62340 1.34484 1.21988 0.97171 0.90045 0.84050 0.91166 1.22668 1.08423 0.94983 0.93872 1.22928 0.94066 1.03110 0.98544 1.22956 0.95287 1.02492 1.01013 1.21753 0.94971 0.95382 0.84206 0.90140 1.23336 1.02388 0.96808 0.94866 1.21716 0.95746 0.84064 0.95370 1.44737 1.82705 1.06778 1.00463 1.19416 1.40214 0.92072 0.85128 0.90183 1.25627 1.02217 0.97907 0.99859 1.70024 1.56378 1.13216 1.20062 0.85038 0.77593 0.77734 0.78692 1.21754 1.21703 1.19215 1.21632 0.98304 0.95003 0.84590 0.90598 0.93129 0.91794 0.92349 0.90851 0.87465 0.90691 0.91342 0.86057 0.88155 0.89468 0.87212 0.87999 0.87500 0.88053 0.89592 0.89282 0.90727 1.00024 0.89986 0.94194 0.93955 0.97161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.14 -2.60 5.77 30.60 0.18 -2.43 16 3 C 0.10 2.05 4.15 86.38 0.36 2.41 16 4 N -0.59 -16.60 2.50 -791.25 -1.98 -18.58 16 5 C 0.52 14.96 6.93 87.66 0.61 15.57 16 6 O -0.58 -22.00 14.82 -3.05 -0.05 -22.04 16 7 C -0.13 -2.47 1.92 -10.28 -0.02 -2.49 16 8 H 0.14 1.99 5.75 -2.39 -0.01 1.98 16 9 C -0.14 -2.13 6.00 32.05 0.19 -1.94 16 10 C 0.05 0.69 7.78 72.65 0.56 1.26 16 11 O -0.39 -8.06 9.44 -148.98 -1.41 -9.47 16 12 C 0.13 2.82 3.42 31.06 0.11 2.93 16 13 H 0.07 2.10 6.70 -2.39 -0.02 2.08 16 14 C -0.18 -3.51 5.55 -10.80 -0.06 -3.57 16 15 C -0.15 -2.32 9.89 30.62 0.30 -2.02 16 16 C -0.18 -3.32 10.22 30.62 0.31 -3.00 16 17 C 0.14 5.22 3.34 46.18 0.15 5.37 16 18 H 0.08 3.34 7.02 -2.39 -0.02 3.33 16 19 C -0.14 -5.04 6.29 31.99 0.20 -4.84 16 20 C 0.16 7.77 5.89 86.85 0.51 8.28 16 21 N -0.62 -32.13 3.40 -691.30 -2.35 -34.48 16 22 C -0.24 -13.39 10.28 84.04 0.86 -12.53 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 25 N -0.95 -55.90 10.09 21.65 0.22 -55.68 16 26 Si 0.98 45.24 29.55 68.60 2.03 47.26 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 30 C 0.13 5.58 6.79 86.68 0.59 6.17 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.32 5.56 -2.39 -0.01 1.30 16 35 H 0.07 1.15 6.59 -2.38 -0.02 1.14 16 36 H 0.11 1.56 4.99 -2.39 -0.01 1.55 16 37 H 0.07 1.90 6.57 -2.39 -0.02 1.88 16 38 H 0.07 1.29 8.03 -2.38 -0.02 1.27 16 39 H 0.12 1.10 6.54 -2.39 -0.02 1.08 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 2.09 8.12 -2.39 -0.02 2.07 16 43 H 0.10 1.62 7.07 -2.39 -0.02 1.61 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 3.05 4.86 -2.38 -0.01 3.04 16 48 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 49 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.08 4.55 5.86 -2.39 -0.01 4.54 16 51 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 52 H 0.04 1.68 6.43 -2.39 -0.02 1.67 16 53 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -70.88 396.55 3.40 -67.48 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.90 Total: 20.75 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.04 Total: 4.77 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -4.11 Total: -108.75 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.45 Total: -31.51 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.88 3.40 -67.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714870085.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.943 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds