Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47081 * 2 1 4 4 H 1.08999 * 115.54614 * 29.32841 * 3 2 1 5 5 C 1.52994 * 117.51623 * 243.62887 * 3 2 1 6 6 C 1.52995 * 117.49685 * 174.99993 * 3 2 1 7 7 H 1.09001 * 117.50322 * 0.02562 * 6 3 2 8 8 C 1.50697 * 117.49634 * 215.00317 * 6 3 2 9 9 O 1.21279 * 120.00369 * 0.02562 * 8 6 3 10 10 N 1.34780 * 120.00083 * 180.02562 * 8 6 3 11 11 C 1.46932 * 120.57266 * 179.97438 * 10 8 6 12 12 C 1.53300 * 108.71621 * 125.87241 * 11 10 8 13 13 C 1.52407 * 109.39681 * 53.68708 * 12 11 10 14 14 C 1.54295 * 110.34130 * 177.37888 * 13 12 11 15 15 O 1.44550 * 104.69962 * 217.82312 * 14 13 12 16 16 C 1.44473 * 105.36418 * 40.09219 * 15 14 13 17 17 H 1.08994 * 110.36530 * 78.66667 * 16 15 14 18 18 C 1.53001 * 110.45953 * 200.94409 * 16 15 14 19 19 N 1.46500 * 109.46958 * 295.45695 * 18 16 15 20 20 C 1.36940 * 119.99598 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00476 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99888 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00030 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00044 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47000 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47287 * 120.00147 * 24 22 20 27 27 H 1.48495 * 109.47268 * 240.00119 * 24 22 20 28 28 C 1.54001 * 110.24488 * 62.55487 * 13 12 11 29 29 C 1.52409 * 111.00875 * 300.09798 * 13 12 11 30 30 C 1.46925 * 120.57319 * 0.02591 * 10 8 6 31 31 H 1.09004 * 109.47479 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47612 * 300.00186 * 1 2 3 34 34 H 1.08999 * 109.47274 * 240.00503 * 2 1 3 35 35 H 1.08998 * 109.47386 * 119.99842 * 2 1 3 36 36 H 1.09005 * 117.49583 * 145.02831 * 5 3 2 37 37 H 1.08998 * 117.50411 * 0.02562 * 5 3 2 38 38 H 1.08995 * 109.59983 * 6.09824 * 11 10 8 39 39 H 1.08998 * 109.72116 * 245.71161 * 11 10 8 40 40 H 1.08998 * 109.47727 * 293.70832 * 12 11 10 41 41 H 1.09001 * 109.49342 * 173.67526 * 12 11 10 42 42 H 1.09000 * 110.32351 * 99.05132 * 14 13 12 43 43 H 1.09004 * 110.45822 * 336.66412 * 14 13 12 44 44 H 1.09004 * 109.46855 * 55.45500 * 18 16 15 45 45 H 1.08999 * 109.46875 * 175.46012 * 18 16 15 46 46 H 0.96995 * 120.00470 * 0.02562 * 19 18 16 47 47 H 0.96997 * 120.00530 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.54666 * 359.80749 * 28 13 12 49 49 H 1.08997 * 110.54377 * 237.14695 * 28 13 12 50 50 H 1.09000 * 109.48227 * 179.88024 * 29 13 12 51 51 H 1.09002 * 109.48638 * 299.92825 * 29 13 12 52 52 H 1.08998 * 109.59432 * 353.89741 * 30 10 8 53 53 H 1.09000 * 109.59831 * 114.20391 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9081 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1957 8 6 4.0227 2.8617 0.8919 9 8 3.2158 3.6159 1.3927 10 7 5.3423 3.1003 1.0273 11 6 5.8171 4.2704 1.7784 12 6 6.7954 3.7972 2.8596 13 6 7.8921 2.9564 2.2168 14 6 8.9261 2.5227 3.2767 15 8 10.2001 2.5953 2.5975 16 6 10.1359 3.7918 1.7904 17 1 10.3083 4.6744 2.4062 18 6 11.1602 3.7271 0.6557 19 7 12.5126 3.7139 1.2189 20 6 13.5997 3.6577 0.3880 21 1 13.4601 3.6236 -0.6824 22 6 14.8811 3.6458 0.9215 23 7 15.0513 3.6879 2.2260 24 14 16.3641 3.5699 -0.2119 25 1 15.9063 3.5315 -1.6240 26 1 17.2116 4.7706 0.0008 27 1 17.1532 2.3479 0.0866 28 6 8.6996 3.8067 1.2186 29 6 7.3056 1.7363 1.5166 30 6 6.3310 2.1952 0.4254 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.7210 2.9435 -1.5338 37 1 3.0092 1.1869 -2.0160 38 1 4.9704 4.7728 2.2460 39 1 6.3239 4.9600 1.1033 40 1 6.2610 3.1966 3.5956 41 1 7.2411 4.6623 3.3506 42 1 8.7277 1.5021 3.6038 43 1 8.9095 3.2049 4.1267 44 1 11.0003 2.8197 0.0733 45 1 11.0436 4.5981 0.0109 46 1 12.6380 3.7442 2.1802 47 1 15.9467 3.6792 2.5988 48 1 8.3126 4.8251 1.1829 49 1 8.6781 3.3554 0.2267 50 1 8.1095 1.1551 1.0648 51 1 6.7750 1.1204 2.2427 52 1 5.8230 1.3292 0.0009 53 1 6.8768 2.7196 -0.3590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755464324.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = -75.624149 kcal Electronic energy + Delta-G solvation = -29767.373319 eV Core-core repulsion = 25831.587802 eV Total energy + Delta-G solvation = -3935.785516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.90893 -40.73893 -38.49062 -37.58302 -36.39114 -34.37364 -33.50429 -32.96911 -32.18674 -31.01890 -28.62955 -27.06226 -25.83558 -24.65558 -24.51027 -24.38938 -23.36518 -22.16428 -21.49697 -20.60743 -19.29137 -19.14156 -18.32681 -17.32078 -17.14434 -16.65170 -16.52657 -16.29250 -16.15032 -15.68961 -15.39493 -15.25173 -15.12679 -14.94594 -14.89398 -14.61507 -14.18501 -13.83071 -13.50419 -13.45774 -13.43349 -13.29309 -13.10018 -12.98262 -12.92219 -12.79178 -12.42150 -12.26067 -12.18502 -12.13935 -12.00766 -11.91630 -11.87682 -11.53040 -11.42590 -11.30803 -11.23316 -10.98147 -10.91345 -10.75104 -10.56956 -9.66232 -8.99563 -7.93704 -5.23170 1.44566 1.47276 1.49040 1.59101 1.93710 2.56348 2.84379 3.00358 3.39514 3.40936 3.43941 3.57733 3.73906 3.80479 3.82838 3.90952 3.99578 4.05748 4.17560 4.18961 4.28520 4.30508 4.33024 4.47211 4.47750 4.53324 4.55547 4.63536 4.66176 4.68714 4.77786 4.79012 4.81538 4.82366 4.93259 4.96212 4.98295 5.02099 5.02850 5.04086 5.16554 5.20358 5.22993 5.26616 5.30608 5.34183 5.48920 5.49908 5.55095 6.04408 6.27822 6.37446 7.12969 7.33554 8.10058 8.33219 9.30369 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.002007 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.686413 B =13947.350585 C =14403.108074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.123 4.123 4 H 0.092 0.908 5 C -0.135 4.135 6 C -0.197 4.197 7 H 0.148 0.852 8 C 0.538 3.462 9 O -0.590 6.590 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.111 4.111 13 C -0.079 4.079 14 C 0.046 3.954 15 O -0.391 6.391 16 C 0.074 3.926 17 H 0.056 0.944 18 C 0.157 3.843 19 N -0.744 5.744 20 C -0.246 4.246 21 H 0.079 0.921 22 C -0.080 4.080 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.292 1.292 27 H -0.294 1.294 28 C -0.128 4.128 29 C -0.115 4.115 30 C 0.107 3.893 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.041 0.959 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.075 0.925 52 H 0.111 0.889 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.757 -6.554 -5.231 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.142 4.142 4 H 0.110 0.890 5 C -0.172 4.172 6 C -0.217 4.217 7 H 0.165 0.835 8 C 0.328 3.672 9 O -0.471 6.471 10 N -0.333 5.333 11 C -0.012 4.012 12 C -0.149 4.149 13 C -0.079 4.079 14 C -0.031 4.031 15 O -0.310 6.310 16 C 0.016 3.984 17 H 0.074 0.926 18 C 0.031 3.969 19 N -0.387 5.387 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.219 1.219 27 H -0.221 1.221 28 C -0.166 4.166 29 C -0.154 4.154 30 C -0.015 4.015 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.100 0.900 51 H 0.094 0.906 52 H 0.129 0.871 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.914 -6.307 -5.142 31.001 hybrid contribution 1.254 0.428 0.428 1.392 sum -28.660 -5.879 -4.714 29.634 Atomic orbital electron populations 1.21745 0.95099 1.02201 1.01758 1.21155 0.96351 0.92312 1.02957 1.22468 0.90836 0.99351 1.01563 0.89010 1.23181 1.00458 1.03276 0.90294 1.22397 0.98100 0.98518 1.02731 0.83462 1.20214 0.81730 0.85877 0.79345 1.90655 1.54639 1.50717 1.51106 1.48105 1.05353 1.26850 1.53028 1.21648 0.97795 0.87644 0.94102 1.21781 0.95391 1.00226 0.97469 1.21451 0.95005 0.96207 0.95279 1.23668 0.82232 1.02477 0.94679 1.89296 1.35903 1.44074 1.61726 1.23180 0.95670 0.87758 0.91775 0.92590 1.20930 0.83589 0.98357 0.94045 1.42532 1.01089 1.89110 1.05933 1.19732 0.86316 1.40997 0.90721 0.90333 1.25644 1.00486 1.03730 0.97291 1.69856 1.21338 1.59538 1.11476 0.85015 0.79237 0.76646 0.78501 1.18742 1.21947 1.22106 1.23032 0.92040 1.01664 0.99852 1.21848 0.98830 0.96280 0.98393 1.22026 0.89878 0.94297 0.95314 0.92439 0.91569 0.93452 0.89990 0.91386 0.89438 0.85136 0.90385 0.90267 0.91208 0.89706 0.88502 0.92160 0.95826 0.94128 0.79544 0.94074 0.88942 0.89413 0.90035 0.90603 0.87119 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.87 71.98 0.71 -0.69 16 2 C -0.09 -0.85 6.22 30.60 0.19 -0.66 16 3 C -0.12 -1.69 5.25 -10.79 -0.06 -1.74 16 4 H 0.09 1.74 7.60 -2.39 -0.02 1.72 16 5 C -0.13 -1.50 9.88 30.59 0.30 -1.20 16 6 C -0.20 -2.68 4.84 -11.54 -0.06 -2.73 16 7 H 0.15 1.30 6.57 -2.39 -0.02 1.29 16 8 C 0.54 11.06 7.48 87.66 0.66 11.71 16 9 O -0.59 -17.03 15.66 -3.03 -0.05 -17.08 16 10 N -0.60 -10.32 2.96 -818.41 -2.42 -12.74 16 11 C 0.11 1.96 6.12 86.40 0.53 2.48 16 12 C -0.11 -1.84 4.65 30.50 0.14 -1.70 16 13 C -0.08 -1.48 0.69 -51.80 -0.04 -1.52 16 14 C 0.05 1.13 6.74 72.42 0.49 1.61 16 15 O -0.39 -13.94 11.31 -148.98 -1.69 -15.63 16 16 C 0.07 2.41 3.34 31.14 0.10 2.51 16 17 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 18 C 0.16 6.36 5.88 86.38 0.51 6.87 16 19 N -0.74 -39.71 5.57 -343.44 -1.91 -41.62 16 20 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 23 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 24 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 28 C -0.13 -2.78 4.95 31.48 0.16 -2.62 16 29 C -0.12 -1.77 4.65 30.51 0.14 -1.63 16 30 C 0.11 1.36 6.03 86.41 0.52 1.88 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.53 7.88 -2.39 -0.02 0.51 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.13 0.80 8.03 -2.39 -0.02 0.78 16 38 H 0.08 1.64 7.00 -2.39 -0.02 1.62 16 39 H 0.08 1.28 6.84 -2.39 -0.02 1.26 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 42 H 0.10 2.12 7.86 -2.39 -0.02 2.10 16 43 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 44 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.37 21.66 7.67 -92.71 -0.71 20.95 16 47 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.09 1.72 6.57 -2.39 -0.02 1.71 16 49 H 0.09 1.78 6.31 -2.39 -0.02 1.77 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.11 0.93 5.50 -2.39 -0.01 0.92 16 53 H 0.08 1.00 6.85 -2.39 -0.02 0.98 16 Total: -1.00 -75.69 407.87 2.03 -73.66 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.18 Total: 30.66 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.61 Total: -4.96 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.05 Total: -115.59 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.73 Total: -32.70 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.69 2.03 -73.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464324.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.964 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds