Wall clock time and date at job start Tue Mar 31 2020 20:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47784 * 2 1 4 4 H 1.09003 * 109.47026 * 305.00133 * 3 2 1 5 5 O 1.42901 * 109.46875 * 64.99482 * 3 2 1 6 6 C 1.42899 * 114.00180 * 270.00101 * 5 3 2 7 7 C 1.54891 * 110.75203 * 150.00025 * 6 5 3 8 8 C 1.54272 * 104.31303 * 156.32362 * 7 6 5 9 9 C 1.53878 * 106.59719 * 336.32826 * 8 7 6 10 10 C 1.54268 * 106.59806 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47680 * 184.99810 * 3 2 1 12 12 O 1.21274 * 120.00337 * 244.99672 * 11 3 2 13 13 N 1.34783 * 119.99753 * 65.00287 * 11 3 2 14 14 C 1.46498 * 119.99666 * 180.02562 * 13 11 3 15 15 C 1.50709 * 109.46749 * 179.97438 * 14 13 11 16 16 C 1.29449 * 117.69233 * 95.00283 * 15 14 13 17 17 C 1.50325 * 123.65248 * 180.85946 * 16 15 14 18 18 N 1.47004 * 109.16227 * 349.01727 * 17 16 15 19 19 C 1.36937 * 121.37427 * 222.96803 * 18 17 16 20 20 H 1.07998 * 119.99684 * 155.96727 * 19 18 17 21 21 C 1.38814 * 120.00239 * 335.97109 * 19 18 17 22 22 N 1.31618 * 119.99753 * 344.52141 * 21 19 18 23 23 Si 1.86793 * 120.00065 * 164.52566 * 21 19 18 24 24 H 1.48498 * 109.47515 * 59.99862 * 23 21 19 25 25 H 1.48502 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46834 * 299.99649 * 23 21 19 27 27 C 1.47340 * 117.24975 * 42.95120 * 18 17 16 28 28 C 1.49961 * 117.69392 * 274.73801 * 15 14 13 29 29 H 1.08999 * 109.46287 * 59.99604 * 1 2 3 30 30 H 1.08992 * 109.47465 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46646 * 300.00446 * 1 2 3 32 32 H 1.09001 * 109.46990 * 239.99513 * 2 1 3 33 33 H 1.09001 * 109.47089 * 119.99954 * 2 1 3 34 34 H 1.08997 * 110.81959 * 26.67050 * 6 5 3 35 35 H 1.09000 * 110.48900 * 37.58240 * 7 6 5 36 36 H 1.08996 * 110.49197 * 275.06804 * 7 6 5 37 37 H 1.09005 * 110.03093 * 95.60585 * 8 7 6 38 38 H 1.09001 * 110.03765 * 217.04026 * 8 7 6 39 39 H 1.08999 * 110.03177 * 119.27767 * 9 8 7 40 40 H 1.08997 * 110.03042 * 240.66479 * 9 8 7 41 41 H 1.08992 * 110.48370 * 142.29430 * 10 9 8 42 42 H 1.09002 * 110.48118 * 264.80354 * 10 9 8 43 43 H 0.97001 * 119.99939 * 359.97438 * 13 11 3 44 44 H 1.09003 * 109.47158 * 299.99403 * 14 13 11 45 45 H 1.08996 * 109.47480 * 60.00093 * 14 13 11 46 46 H 1.08002 * 118.17925 * 0.87398 * 16 15 14 47 47 H 1.09003 * 109.52399 * 108.92383 * 17 16 15 48 48 H 1.08996 * 109.52362 * 229.11096 * 17 16 15 49 49 H 0.96995 * 120.00043 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.78347 * 57.80703 * 27 18 17 51 51 H 1.09000 * 109.77708 * 178.61693 * 27 18 17 52 52 H 1.09004 * 109.31450 * 281.28896 * 28 15 14 53 53 H 1.09000 * 109.31956 * 40.71725 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 -0.8418 5 8 1.6621 2.0813 1.2210 6 6 0.3929 2.7357 1.1659 7 6 -0.2856 2.7354 2.5583 8 6 -1.2615 3.9292 2.5072 9 6 -0.7218 4.8925 1.4354 10 6 0.5634 4.2508 0.8731 11 6 3.5420 1.4442 -0.1238 12 8 4.2251 1.8610 0.7875 13 7 4.1261 0.9827 -1.2474 14 6 5.5862 0.9839 -1.3675 15 6 5.9803 0.4212 -2.7089 16 6 6.1960 1.2583 -3.6725 17 6 6.5769 0.8438 -5.0664 18 7 6.9118 -0.5876 -5.0696 19 6 7.9971 -1.0643 -5.7552 20 1 8.4573 -1.9950 -5.4581 21 6 8.5058 -0.3512 -6.8321 22 7 7.7888 0.6027 -7.3874 23 14 10.2077 -0.7455 -7.4932 24 1 10.2471 -2.1586 -7.9480 25 1 10.5149 0.1516 -8.6361 26 1 11.2146 -0.5424 -6.4207 27 6 6.0318 -1.4881 -4.3044 28 6 6.1007 -1.0685 -2.8317 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 -0.2520 2.2681 0.4219 35 1 0.4556 2.8821 3.3439 36 1 -0.8298 1.8045 2.7174 37 1 -2.2584 3.5850 2.2318 38 1 -1.2925 4.4279 3.4759 39 1 -1.4568 5.0157 0.6400 40 1 -0.4918 5.8589 1.8839 41 1 0.6387 4.4251 -0.2001 42 1 1.4416 4.6442 1.3851 43 1 3.5797 0.6490 -1.9761 44 1 5.9572 2.0049 -1.2781 45 1 6.0164 0.3703 -0.5760 46 1 6.0972 2.3132 -3.4633 47 1 5.7400 1.0236 -5.7413 48 1 7.4413 1.4209 -5.3946 49 1 8.1440 1.1008 -8.1401 50 1 5.0083 -1.4013 -4.6690 51 1 6.3756 -2.5171 -4.4098 52 1 7.0512 -1.3897 -2.4056 53 1 5.2854 -1.5425 -2.2851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755894373.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:02 Heat of formation + Delta-G solvation = -78.915931 kcal Electronic energy + Delta-G solvation = -29525.889114 eV Core-core repulsion = 25589.960856 eV Total energy + Delta-G solvation = -3935.928259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.25750 -39.89306 -39.21905 -37.23442 -36.40808 -34.72007 -33.88862 -32.57058 -31.42861 -29.93562 -29.50844 -28.59815 -27.27958 -25.59969 -24.37203 -23.20391 -22.77002 -21.73906 -21.53073 -21.08900 -19.52037 -18.76016 -18.34036 -17.36977 -17.02745 -16.90997 -16.51914 -16.42735 -15.90264 -15.66411 -15.58352 -15.24305 -15.20830 -14.96773 -14.45962 -14.44741 -14.16397 -13.94345 -13.62181 -13.49350 -13.32799 -13.27198 -13.02693 -12.94393 -12.87043 -12.77110 -12.58615 -12.32230 -12.25831 -12.11210 -12.05971 -12.03653 -11.86514 -11.70688 -11.35535 -11.27739 -11.26510 -10.94496 -10.67889 -10.36570 -10.14342 -9.64886 -8.74602 -7.88400 -5.29261 1.13331 1.47014 1.49800 1.53281 1.55865 2.05272 2.51302 2.93719 3.28706 3.59446 3.61988 3.64194 3.73303 3.84141 3.86793 3.95214 3.98596 4.01603 4.24336 4.36186 4.43139 4.48593 4.50631 4.54149 4.60239 4.64034 4.64994 4.73484 4.74831 4.82910 4.84293 4.90669 4.92051 5.05926 5.08590 5.10583 5.10782 5.18189 5.21955 5.23094 5.27680 5.32942 5.37629 5.40952 5.46308 5.48486 5.61569 5.76433 6.15835 6.19468 6.34168 6.54762 7.13787 7.18491 7.84054 8.37401 9.19963 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.001989 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.408802 B =14074.067193 C =14356.290241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C 0.078 3.922 4 H 0.107 0.893 5 O -0.372 6.372 6 C 0.068 3.932 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.153 4.153 11 C 0.509 3.491 12 O -0.574 6.574 13 N -0.706 5.706 14 C 0.168 3.832 15 C -0.138 4.138 16 C -0.141 4.141 17 C 0.205 3.795 18 N -0.615 5.615 19 C -0.257 4.257 20 H 0.070 0.930 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.282 1.282 27 C 0.139 3.861 28 C -0.084 4.084 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.414 0.586 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.017 0.983 48 H 0.056 0.944 49 H 0.250 0.750 50 H 0.031 0.969 51 H 0.059 0.941 52 H 0.062 0.938 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.683 2.917 16.898 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.176 4.176 3 C 0.017 3.983 4 H 0.125 0.875 5 O -0.290 6.290 6 C 0.011 3.989 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.158 4.158 10 C -0.191 4.191 11 C 0.296 3.704 12 O -0.453 6.453 13 N -0.360 5.360 14 C 0.045 3.955 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.080 3.920 18 N -0.339 5.339 19 C -0.387 4.387 20 H 0.088 0.912 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.208 1.208 27 C 0.014 3.986 28 C -0.123 4.123 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.034 0.966 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.080 0.920 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.030 3.294 17.589 27.613 hybrid contribution 1.102 0.079 -1.199 1.630 sum -19.928 3.374 16.391 26.022 Atomic orbital electron populations 1.21940 0.93330 1.03434 1.02654 1.22013 0.98409 0.93371 1.03781 1.22052 0.90001 0.96540 0.89750 0.87495 1.88046 1.37564 1.70907 1.32517 1.23728 0.84054 0.91770 0.99362 1.22424 0.98083 0.99775 0.95633 1.22082 0.98920 0.95093 0.99568 1.22047 0.96151 0.98801 0.98828 1.22941 0.98849 0.96083 1.01213 1.21024 0.90996 0.76654 0.81720 1.90690 1.66298 1.47727 1.40599 1.45951 1.07469 1.64241 1.18328 1.20226 0.80237 1.00168 0.94895 1.20577 1.03527 0.96016 0.93709 1.22959 0.97838 0.99256 0.96109 1.19405 0.97634 0.84869 0.90106 1.44402 1.29522 1.02519 1.57499 1.19471 1.04711 1.07170 1.07323 0.91234 1.25727 1.02286 1.00009 0.96918 1.70148 1.37114 1.26789 1.24478 0.85342 0.80412 0.77515 0.77201 1.20026 1.22092 1.20789 1.21187 0.93137 0.93779 0.90529 1.20732 1.01841 0.91916 0.97779 0.91113 0.90973 0.92017 0.88913 0.91820 0.88294 0.92318 0.90001 0.89921 0.91035 0.90301 0.91523 0.91271 0.92934 0.74919 0.92272 0.91455 0.87089 0.96580 0.92596 0.94127 0.95065 0.92267 0.91971 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.59 71.98 0.62 -0.99 16 2 C -0.14 -2.01 5.61 30.59 0.17 -1.84 16 3 C 0.08 1.50 2.67 29.84 0.08 1.58 16 4 H 0.11 1.56 7.78 -2.39 -0.02 1.54 16 5 O -0.37 -8.62 9.25 -129.99 -1.20 -9.82 16 6 C 0.07 1.09 2.01 32.01 0.06 1.16 16 7 C -0.12 -1.71 6.46 31.67 0.20 -1.51 16 8 C -0.12 -1.24 6.80 31.32 0.21 -1.02 16 9 C -0.12 -1.41 6.80 31.32 0.21 -1.19 16 10 C -0.15 -2.50 6.57 31.80 0.21 -2.29 16 11 C 0.51 13.57 7.18 87.65 0.63 14.20 16 12 O -0.57 -21.06 16.51 15.98 0.26 -20.80 16 13 N -0.71 -16.48 5.45 -466.78 -2.54 -19.02 16 14 C 0.17 4.69 5.66 85.64 0.48 5.17 16 15 C -0.14 -4.33 5.22 -15.13 -0.08 -4.41 16 16 C -0.14 -5.16 9.47 27.11 0.26 -4.90 16 17 C 0.20 9.70 5.23 85.42 0.45 10.14 16 18 N -0.62 -30.18 3.01 -703.03 -2.11 -32.30 16 19 C -0.26 -13.95 9.71 84.03 0.82 -13.13 16 20 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 21 C -0.05 -3.02 5.01 84.86 0.43 -2.60 16 22 N -0.94 -54.81 11.08 21.65 0.24 -54.57 16 23 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 C 0.14 5.34 6.59 86.32 0.57 5.91 16 28 C -0.08 -2.61 5.95 29.71 0.18 -2.44 16 29 H 0.07 0.55 8.01 -2.39 -0.02 0.53 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 5.54 -2.39 -0.01 0.66 16 32 H 0.09 1.10 7.77 -2.39 -0.02 1.08 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.16 5.50 -2.39 -0.01 1.14 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.93 7.79 -2.39 -0.02 0.92 16 37 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.41 7.62 8.17 -92.71 -0.76 6.87 16 44 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 45 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 46 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 48 H 0.06 3.03 6.41 -2.39 -0.02 3.02 16 49 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 52 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 53 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.76 412.31 2.29 -68.47 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.12 Total: 19.40 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.50 Total: 1.84 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.42 Total: -105.89 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.94 Total: -30.62 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.76 2.29 -68.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755894373.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.450 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds