Wall clock time and date at job start Tue Mar 31 2020 19:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.81132 * 2 1 4 4 C 1.53022 * 109.64474 * 239.47312 * 2 1 3 5 5 C 1.50062 * 110.14797 * 190.87660 * 4 2 1 6 6 C 1.29444 * 124.07756 * 17.13789 * 5 4 2 7 7 C 1.50170 * 124.14589 * 359.74993 * 6 5 4 8 8 C 1.53027 * 110.09294 * 16.72393 * 7 6 5 9 9 H 1.08998 * 109.64490 * 70.67085 * 8 7 6 10 10 C 1.50698 * 109.64287 * 191.09552 * 8 7 6 11 11 O 1.21283 * 120.00109 * 82.55159 * 10 8 7 12 12 N 1.34776 * 119.99670 * 262.55937 * 10 8 7 13 13 C 1.46498 * 120.00266 * 5.23181 * 12 10 8 14 14 C 1.50702 * 109.47304 * 265.57115 * 13 12 10 15 15 H 1.08001 * 120.00013 * 334.44832 * 14 13 12 16 16 C 1.37871 * 119.99802 * 154.72079 * 14 13 12 17 17 N 1.31515 * 120.00107 * 174.51441 * 16 14 13 18 18 Si 1.86804 * 120.00278 * 354.51681 * 16 14 13 19 19 H 1.48500 * 109.47035 * 92.70668 * 18 16 14 20 20 H 1.48496 * 109.46938 * 212.70881 * 18 16 14 21 21 H 1.48501 * 109.46797 * 332.70873 * 18 16 14 22 22 C 1.46506 * 119.99628 * 185.24266 * 12 10 8 23 23 C 1.53001 * 109.46791 * 274.29023 * 22 12 10 24 24 N 1.46899 * 109.47303 * 179.97438 * 23 22 12 25 25 C 1.47005 * 111.00207 * 293.64152 * 24 23 22 26 26 C 1.53100 * 109.26002 * 177.60734 * 25 24 23 27 27 O 1.43014 * 109.26247 * 56.84183 * 26 25 24 28 28 C 1.43023 * 113.73697 * 301.33659 * 27 26 25 29 29 C 1.47014 * 111.00254 * 169.99700 * 24 23 22 30 30 H 1.09001 * 109.47539 * 305.90809 * 1 2 3 31 31 H 1.09005 * 109.47122 * 65.90707 * 1 2 3 32 32 H 1.09003 * 109.47545 * 185.90130 * 1 2 3 33 33 H 1.08998 * 109.35649 * 311.08903 * 4 2 1 34 34 H 1.09003 * 109.35722 * 70.66788 * 4 2 1 35 35 H 1.08001 * 117.96459 * 197.10674 * 5 4 2 36 36 H 1.07998 * 117.96425 * 179.55414 * 6 5 4 37 37 H 1.08997 * 109.21089 * 256.64258 * 7 6 5 38 38 H 1.08994 * 109.55900 * 137.02312 * 7 6 5 39 39 H 1.09004 * 109.47046 * 145.57226 * 13 12 10 40 40 H 1.08999 * 109.46758 * 25.57653 * 13 12 10 41 41 H 0.96996 * 120.00338 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47287 * 34.28697 * 22 12 10 43 43 H 1.08998 * 109.46939 * 154.29602 * 22 12 10 44 44 H 1.08996 * 109.47516 * 300.00383 * 23 22 12 45 45 H 1.09005 * 109.46899 * 60.00175 * 23 22 12 46 46 H 1.09004 * 109.50490 * 297.53633 * 25 24 23 47 47 H 1.08999 * 109.51297 * 57.66789 * 25 24 23 48 48 H 1.09008 * 109.50094 * 296.91044 * 26 25 24 49 49 H 1.08997 * 109.54610 * 176.80358 * 26 25 24 50 50 H 1.08994 * 109.50754 * 298.72864 * 28 27 26 51 51 H 1.08998 * 109.54031 * 178.62033 * 28 27 26 52 52 H 1.09003 * 109.51026 * 302.33844 * 29 24 23 53 53 H 1.09005 * 109.50205 * 62.46222 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0444 -0.7320 -1.2414 5 6 3.5211 -0.9720 -1.1251 6 6 4.1817 -0.9035 -0.0140 7 6 3.5654 -0.5691 1.3139 8 6 2.0456 -0.7338 1.2444 9 1 1.7944 -1.7923 1.1759 10 6 1.4150 -0.1425 2.4788 11 8 1.2067 1.0507 2.5411 12 7 1.0826 -0.9396 3.5135 13 6 1.4375 -2.3607 3.4869 14 6 0.2769 -3.1584 2.9506 15 1 -0.7292 -2.7768 3.0430 16 6 0.4990 -4.3779 2.3470 17 7 -0.5192 -5.1231 1.9761 18 14 2.2460 -4.9717 2.0559 19 1 2.6833 -5.8052 3.2046 20 1 2.2930 -5.7803 0.8113 21 1 3.1504 -3.8017 1.9207 22 6 0.3662 -0.3848 4.6648 23 6 1.3719 0.2072 5.6542 24 7 0.6536 0.7640 6.8084 25 6 -0.1614 1.9219 6.4131 26 6 -0.9369 2.4327 7.6304 27 8 -0.0158 2.7508 8.6771 28 6 0.7939 1.6455 9.0872 29 6 1.5869 1.1268 7.8848 30 1 -0.3634 0.6027 0.8324 31 1 -0.3634 0.4195 -0.9382 32 1 -0.3634 -1.0222 0.1057 33 1 1.5293 -1.6879 -1.3365 34 1 1.8452 -0.1271 -2.1260 35 1 4.0667 -1.2177 -2.0242 36 1 5.2429 -1.1023 -0.0427 37 1 3.8056 0.4624 1.5713 38 1 3.9661 -1.2332 2.0798 39 1 1.6725 -2.6954 4.4973 40 1 2.3062 -2.5062 2.8448 41 1 -0.3630 -5.9813 1.5518 42 1 -0.3143 0.3967 4.3271 43 1 -0.2025 -1.1755 5.1542 44 1 2.0526 -0.5742 5.9919 45 1 1.9407 0.9979 5.1648 46 1 0.4879 2.7127 6.0373 47 1 -0.8626 1.6244 5.6334 48 1 -1.6253 1.6603 7.9736 49 1 -1.4989 3.3254 7.3563 50 1 0.1559 0.8503 9.4728 51 1 1.4841 1.9685 9.8665 52 1 2.1620 0.2490 8.1793 53 1 2.2641 1.9049 7.5324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330503528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:44 Heat of formation + Delta-G solvation = -85.050621 kcal Electronic energy + Delta-G solvation = -31285.883897 eV Core-core repulsion = 27349.689618 eV Total energy + Delta-G solvation = -3936.194279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.55040 -40.53078 -38.90031 -37.34048 -36.44553 -34.54215 -33.62747 -32.52864 -32.15162 -31.04807 -29.51792 -27.78771 -27.09848 -25.12835 -24.98152 -24.25098 -23.33717 -22.04286 -21.39676 -19.80007 -19.14039 -19.02209 -17.98481 -17.77694 -17.19296 -16.98036 -16.51332 -16.22403 -16.17899 -16.00580 -15.90409 -15.64333 -15.21169 -14.95355 -14.71646 -14.52446 -14.36666 -14.20775 -13.95955 -13.85695 -13.57214 -13.43767 -13.13181 -13.05657 -13.00368 -12.88981 -12.66648 -12.61805 -12.53682 -12.34865 -11.88354 -11.78359 -11.66334 -11.62809 -11.51889 -11.45524 -11.30251 -10.82347 -10.73618 -10.46488 -9.87886 -9.57964 -9.38540 -8.30409 -6.37396 1.37045 1.39688 1.41082 1.46993 1.71915 2.10616 2.32360 2.80132 2.95745 3.05024 3.56376 3.73527 3.75496 3.80078 3.89181 3.96913 4.04196 4.15111 4.16430 4.26707 4.30704 4.34895 4.36711 4.43964 4.45727 4.53741 4.54457 4.58915 4.60989 4.69404 4.75382 4.76719 4.78956 4.80686 4.83517 4.89004 4.95157 4.95814 4.97906 5.00015 5.09825 5.15348 5.24959 5.44276 5.46573 5.65993 5.76918 5.88723 5.89870 6.04920 6.13834 6.14316 6.60612 6.69903 7.25547 7.33434 8.85861 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.003806 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.985091 B = 7354.701618 C = 8556.223428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 H 0.074 0.926 4 C -0.088 4.088 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.077 4.077 8 C -0.109 4.109 9 H 0.086 0.914 10 C 0.526 3.474 11 O -0.586 6.586 12 N -0.595 5.595 13 C 0.207 3.793 14 C -0.533 4.533 15 H 0.030 0.970 16 C 0.027 3.973 17 N -0.939 5.939 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.228 1.228 22 C 0.129 3.871 23 C 0.061 3.939 24 N -0.539 5.539 25 C 0.017 3.983 26 C 0.068 3.932 27 O -0.403 6.403 28 C 0.064 3.936 29 C 0.017 3.983 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.268 0.732 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.030 0.970 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.114 0.886 50 H 0.064 0.936 51 H 0.121 0.879 52 H 0.100 0.900 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 10.547 3.947 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 H 0.093 0.907 4 C -0.125 4.125 5 C -0.173 4.173 6 C -0.181 4.181 7 C -0.114 4.114 8 C -0.130 4.130 9 H 0.104 0.896 10 C 0.316 3.684 11 O -0.468 6.468 12 N -0.325 5.325 13 C 0.086 3.914 14 C -0.572 4.572 15 H 0.049 0.951 16 C -0.173 4.173 17 N -0.578 5.578 18 Si 0.747 3.253 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.151 1.151 22 C 0.006 3.994 23 C -0.068 4.068 24 N -0.265 5.265 25 C -0.111 4.111 26 C -0.009 4.009 27 O -0.322 6.322 28 C -0.012 4.012 29 C -0.111 4.111 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.132 0.868 50 H 0.082 0.918 51 H 0.139 0.861 52 H 0.118 0.882 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.231 10.795 4.194 14.208 hybrid contribution 0.467 -0.543 -0.674 0.984 sum 8.698 10.252 3.519 13.898 Atomic orbital electron populations 1.21786 0.95609 1.00837 1.01837 1.20928 0.95189 0.99091 0.93054 0.90730 1.20577 0.93774 1.00607 0.97536 1.22273 0.95782 1.00483 0.98742 1.22114 1.00727 1.01934 0.93288 1.20375 0.91439 1.02103 0.97522 1.21532 0.96963 1.01649 0.92829 0.89566 1.20770 0.77497 0.85840 0.84284 1.90555 1.57475 1.16303 1.82507 1.48168 1.55948 1.10509 1.17898 1.19876 0.95795 0.77132 0.98580 1.21426 0.93598 1.03487 1.38685 0.95127 1.25743 1.01102 0.96155 0.94266 1.70046 1.33127 1.12622 1.42004 0.86045 0.80760 0.79935 0.78533 1.18973 1.21082 1.15139 1.21175 0.94054 0.98192 0.86002 1.22247 0.95681 0.98370 0.90506 1.62161 1.24562 1.30542 1.09221 1.22829 0.97638 0.91560 0.99120 1.22728 0.90880 1.01645 0.85602 1.87941 1.52938 1.36597 1.54695 1.22811 0.93924 0.89201 0.95292 1.22880 0.94626 1.00921 0.92639 0.94374 0.90547 0.94326 0.91448 0.88611 0.85301 0.85415 0.90589 0.90700 0.93808 0.92414 0.92311 0.92356 0.90486 0.89906 0.95797 0.95152 0.90070 0.91722 0.86817 0.91755 0.86150 0.88194 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.68 71.98 0.62 -4.41 16 2 C -0.06 -2.08 2.02 -10.66 -0.02 -2.10 16 3 H 0.07 2.43 8.08 -2.39 -0.02 2.41 16 4 C -0.09 -2.38 5.44 29.66 0.16 -2.22 16 5 C -0.16 -3.80 9.80 27.03 0.27 -3.53 16 6 C -0.16 -4.14 9.80 27.07 0.27 -3.88 16 7 C -0.08 -2.32 5.38 29.69 0.16 -2.16 16 8 C -0.11 -3.93 1.35 -11.40 -0.02 -3.95 16 9 H 0.09 3.56 6.08 -2.39 -0.01 3.54 16 10 C 0.53 21.26 5.59 87.66 0.49 21.75 16 11 O -0.59 -25.47 15.22 -3.04 -0.05 -25.51 16 12 N -0.60 -24.13 2.46 -826.15 -2.04 -26.17 16 13 C 0.21 8.85 4.44 85.63 0.38 9.23 16 14 C -0.53 -28.11 9.54 25.60 0.24 -27.86 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 16 C 0.03 1.43 5.47 84.65 0.46 1.90 16 17 N -0.94 -55.08 13.96 21.45 0.30 -54.78 16 18 Si 0.92 39.09 27.67 68.60 1.90 40.98 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.23 -8.51 5.98 99.48 0.59 -7.92 16 22 C 0.13 4.78 5.28 86.38 0.46 5.24 16 23 C 0.06 1.90 5.25 86.30 0.45 2.35 16 24 N -0.54 -14.78 4.73 -895.23 -4.23 -19.01 16 25 C 0.02 0.45 5.44 86.32 0.47 0.92 16 26 C 0.07 1.51 7.01 72.02 0.50 2.01 16 27 O -0.40 -9.56 10.83 -148.98 -1.61 -11.17 16 28 C 0.06 1.24 7.01 72.01 0.50 1.75 16 29 C 0.02 0.38 5.64 86.31 0.49 0.87 16 30 H 0.04 1.48 6.64 -2.39 -0.02 1.47 16 31 H 0.08 2.20 8.14 -2.38 -0.02 2.19 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 38 H 0.07 2.20 7.59 -2.39 -0.02 2.18 16 39 H 0.04 1.77 8.11 -2.39 -0.02 1.75 16 40 H 0.06 2.35 2.96 -2.39 -0.01 2.34 16 41 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.06 2.26 6.01 -2.39 -0.01 2.25 16 43 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 44 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 45 H 0.02 0.82 8.12 -2.38 -0.02 0.80 16 46 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.08 2.29 6.38 -2.39 -0.02 2.28 16 48 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 50 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 52 H 0.10 1.91 8.09 -2.39 -0.02 1.89 16 53 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -65.14 404.31 0.92 -64.23 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.75 Total: 35.52 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.89 Total: -4.10 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -5.97 Total: -99.95 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.66 Total: -36.68 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 40.98 kcal Total: -65.14 0.92 -64.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330503528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.824 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds