Wall clock time and date at job start Tue Mar 31 2020 20:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.91299 * 2 1 4 4 C 1.55343 * 109.92258 * 238.67339 * 2 1 3 5 5 C 1.53669 * 101.77985 * 218.19264 * 4 2 1 6 6 H 1.09000 * 111.11230 * 281.48077 * 5 4 2 7 7 C 1.51937 * 115.21821 * 154.10994 * 5 4 2 8 8 C 1.53694 * 107.28542 * 185.17350 * 7 5 4 9 9 C 1.52568 * 111.50355 * 58.12890 * 8 7 5 10 10 C 1.53778 * 111.36724 * 305.15003 * 9 8 7 11 11 C 1.50806 * 108.08828 * 56.66020 * 10 9 8 12 12 H 1.08999 * 107.34983 * 54.49069 * 11 10 9 13 13 N 1.45384 * 118.62149 * 178.75924 * 11 10 9 14 14 C 1.34776 * 126.43982 * 330.78029 * 13 11 10 15 15 O 1.21350 * 120.00309 * 354.19712 * 14 13 11 16 16 C 1.49447 * 120.00147 * 174.19699 * 14 13 11 17 17 O 1.21354 * 120.00152 * 356.18208 * 16 14 13 18 18 N 1.34776 * 120.00266 * 176.17790 * 16 14 13 19 19 C 1.46500 * 120.00360 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47570 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47270 * 300.00300 * 20 19 18 22 22 C 1.53010 * 109.47152 * 59.99857 * 20 19 18 23 23 C 1.50701 * 109.47535 * 179.97438 * 20 19 18 24 24 H 1.08003 * 119.99649 * 0.02562 * 23 20 19 25 25 C 1.37879 * 119.99865 * 180.02562 * 23 20 19 26 26 N 1.31511 * 120.00049 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 119.99694 * 180.02562 * 25 23 20 28 28 H 1.48503 * 109.47135 * 59.99547 * 27 25 23 29 29 H 1.48498 * 109.47144 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47144 * 300.00124 * 27 25 23 31 31 H 1.09000 * 109.47250 * 293.38468 * 1 2 3 32 32 H 1.08996 * 109.47077 * 53.37993 * 1 2 3 33 33 H 1.09004 * 109.47277 * 173.38140 * 1 2 3 34 34 H 1.08998 * 110.96377 * 336.32213 * 4 2 1 35 35 H 1.09004 * 110.96359 * 100.03476 * 4 2 1 36 36 H 1.09004 * 109.88800 * 304.61752 * 7 5 4 37 37 H 1.08998 * 109.89515 * 65.64398 * 7 5 4 38 38 H 1.08997 * 109.07548 * 178.65223 * 8 7 5 39 39 H 1.09007 * 109.07371 * 297.60736 * 8 7 5 40 40 H 1.09001 * 109.09945 * 65.63279 * 9 8 7 41 41 H 1.08999 * 109.10441 * 184.66230 * 9 8 7 42 42 H 1.09005 * 109.88197 * 176.73673 * 10 9 8 43 43 H 1.09001 * 109.88261 * 297.73624 * 10 9 8 44 44 H 0.96999 * 119.99831 * 0.02562 * 18 16 14 45 45 H 1.09001 * 109.46747 * 300.00073 * 19 18 16 46 46 H 1.08999 * 109.47235 * 59.99954 * 19 18 16 47 47 H 1.08998 * 109.47301 * 59.99262 * 21 20 19 48 48 H 1.09003 * 109.47244 * 179.97438 * 21 20 19 49 49 H 1.08999 * 109.46863 * 299.99446 * 21 20 19 50 50 H 1.09001 * 109.46964 * 59.99862 * 22 20 19 51 51 H 1.08992 * 109.47153 * 180.02562 * 22 20 19 52 52 H 1.08998 * 109.46777 * 300.00344 * 22 20 19 53 53 H 0.97000 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0593 -0.7593 -1.2475 5 6 3.2777 -1.4977 -0.6718 6 1 4.1313 -0.8275 -0.5707 7 6 3.6681 -2.7710 -1.4031 8 6 4.8098 -3.4231 -0.6071 9 6 4.3910 -3.7209 0.8294 10 6 3.8654 -2.4585 1.5329 11 6 2.7233 -1.9084 0.7160 12 1 2.0002 -2.7133 0.5849 13 7 2.0350 -0.7200 1.1930 14 6 1.8886 -0.3412 2.4781 15 8 2.2635 -1.0710 3.3723 16 6 1.2647 0.9775 2.8020 17 8 0.9531 1.7372 1.9085 18 7 1.0479 1.3232 4.0866 19 6 0.4358 2.6157 4.4041 20 6 0.3022 2.7578 5.9216 21 6 -0.5778 1.6298 6.4639 22 6 1.6880 2.6780 6.5653 23 6 -0.3270 4.0877 6.2482 24 1 -0.6042 4.7637 5.4529 25 6 -0.5486 4.4412 7.5624 26 7 -0.2114 3.6177 8.5307 27 14 -1.3291 6.0894 7.9672 28 1 -2.6744 6.1667 7.3430 29 1 -1.4586 6.2273 9.4401 30 1 -0.4753 7.1842 7.4401 31 1 -0.3634 0.4079 0.9432 32 1 -0.3633 0.6130 -0.8248 33 1 -0.3634 -1.0208 -0.1185 34 1 1.3158 -1.4642 -1.6195 35 1 2.3589 -0.0623 -2.0302 36 1 2.8150 -3.4479 -1.4503 37 1 4.0069 -2.5310 -2.4109 38 1 5.0972 -4.3546 -1.0947 39 1 5.6665 -2.7492 -0.5960 40 1 3.6070 -4.4781 0.8227 41 1 5.2506 -4.1040 1.3795 42 1 3.5199 -2.7097 2.5358 43 1 4.6555 -1.7098 1.5901 44 1 1.2972 0.7161 4.8008 45 1 1.0625 3.4193 4.0173 46 1 -0.5517 2.6725 3.9460 47 1 -0.1223 0.6681 6.2277 48 1 -0.6726 1.7307 7.5451 49 1 -1.5650 1.6867 6.0055 50 1 2.3149 3.4815 6.1789 51 1 1.5928 2.7787 7.6463 52 1 2.1434 1.7163 6.3290 53 1 -0.3670 3.8667 9.4552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422484282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:23 Heat of formation + Delta-G solvation = -99.601121 kcal Electronic energy + Delta-G solvation = -30863.303310 eV Core-core repulsion = 26926.478074 eV Total energy + Delta-G solvation = -3936.825236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26285 -40.72563 -39.16048 -38.25664 -36.95515 -35.06330 -33.42361 -32.74750 -31.61911 -30.78573 -27.95269 -27.62026 -27.24987 -26.97441 -25.49170 -23.12807 -22.66525 -22.15792 -21.17673 -20.76810 -20.36736 -18.63966 -17.96476 -17.75639 -17.28179 -16.71390 -16.57452 -16.48171 -15.84798 -15.60741 -15.27924 -15.11060 -14.98113 -14.81058 -14.62959 -14.23807 -14.07163 -13.98472 -13.80446 -13.34346 -13.28964 -13.15995 -13.08242 -12.92997 -12.76831 -12.69576 -12.63459 -12.33283 -12.27581 -12.14653 -12.09941 -11.99049 -11.69883 -11.52866 -11.42034 -11.30999 -11.24587 -10.99923 -10.76288 -10.41911 -10.41777 -10.12566 -9.79984 -8.02676 -6.19591 0.34663 1.27703 1.45309 1.46284 1.53070 2.12598 2.39856 2.50818 3.21076 3.25733 3.44098 3.63430 3.70386 4.00853 4.08107 4.12455 4.28974 4.32718 4.35466 4.40852 4.44855 4.49317 4.51641 4.57075 4.64882 4.69009 4.81236 4.88853 4.89986 4.99837 5.00709 5.03506 5.05748 5.10341 5.13191 5.14023 5.18022 5.24194 5.26152 5.28564 5.36035 5.37929 5.44559 5.47070 5.57435 5.61790 5.65514 6.07930 6.10415 6.16583 6.27255 6.39054 6.68710 6.84629 6.97753 7.48435 8.96602 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.002511 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.285147 B =11148.027820 C =11861.175231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.094 4.094 6 H 0.080 0.920 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.109 4.109 10 C -0.122 4.122 11 C 0.122 3.878 12 H 0.074 0.926 13 N -0.579 5.579 14 C 0.520 3.480 15 O -0.544 6.544 16 C 0.495 3.505 17 O -0.534 6.534 18 N -0.684 5.684 19 C 0.147 3.853 20 C 0.052 3.948 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.527 4.527 24 H 0.052 0.948 25 C 0.026 3.974 26 N -0.902 5.902 27 Si 0.949 3.051 28 H -0.275 1.275 29 H -0.285 1.285 30 H -0.275 1.275 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.411 0.589 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.023 0.977 51 H 0.064 0.936 52 H 0.027 0.973 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -14.822 -22.041 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.113 4.113 6 H 0.098 0.902 7 C -0.137 4.137 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.160 4.160 11 C 0.019 3.981 12 H 0.092 0.908 13 N -0.311 5.311 14 C 0.303 3.697 15 O -0.422 6.422 16 C 0.276 3.724 17 O -0.412 6.412 18 N -0.336 5.336 19 C 0.024 3.976 20 C 0.051 3.949 21 C -0.181 4.181 22 C -0.181 4.181 23 C -0.566 4.566 24 H 0.070 0.930 25 C -0.174 4.174 26 N -0.540 5.540 27 Si 0.776 3.224 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.248 0.752 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.083 0.917 52 H 0.046 0.954 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.757 -14.643 -21.898 27.461 hybrid contribution -0.456 0.995 1.436 1.806 sum 7.301 -13.648 -20.462 25.657 Atomic orbital electron populations 1.22122 0.94230 1.02109 1.02633 1.22402 0.95036 0.96571 0.83551 0.90292 1.22706 0.97312 0.99787 0.95065 1.22191 0.97785 0.98298 0.93030 0.90194 1.21420 0.98931 0.94262 0.99087 1.21573 0.98308 1.01588 0.94243 1.21487 1.01228 0.95645 0.96306 1.21455 0.96634 0.98499 0.99390 1.21460 0.94689 0.86755 0.95155 0.90822 1.48218 1.52816 1.25603 1.04513 1.19831 0.80395 0.86618 0.82820 1.90713 1.50787 1.54377 1.46295 1.20258 0.80490 0.87781 0.83872 1.90684 1.51277 1.53119 1.46132 1.46075 1.59679 1.20896 1.06995 1.21512 0.96098 0.82093 0.97907 1.18361 0.93458 0.94837 0.88222 1.21704 0.97706 0.95648 1.03068 1.21707 0.96331 0.96963 1.03135 1.21209 1.40833 1.02201 0.92317 0.92991 1.25514 0.95810 0.99765 0.96281 1.69921 1.47843 1.36685 0.99594 0.85752 0.79062 0.80797 0.76813 1.20028 1.21077 1.20055 0.94433 0.89736 0.91862 0.88519 0.87775 0.90623 0.89225 0.90123 0.92126 0.91485 0.91184 0.92363 0.93016 0.75213 0.92891 0.92770 0.95428 0.91727 0.95730 0.95806 0.91713 0.95449 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.89 71.98 0.64 -2.72 16 2 C 0.13 2.71 2.78 45.47 0.13 2.84 16 3 H 0.08 1.98 7.04 -2.39 -0.02 1.97 16 4 C -0.11 -1.40 6.07 31.62 0.19 -1.21 16 5 C -0.09 -1.28 2.61 -10.24 -0.03 -1.31 16 6 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.10 -0.87 5.63 30.48 0.17 -0.70 16 8 C -0.12 -1.19 5.84 30.68 0.18 -1.01 16 9 C -0.11 -1.53 5.85 30.71 0.18 -1.35 16 10 C -0.12 -2.58 5.07 30.14 0.15 -2.43 16 11 C 0.12 2.48 2.47 45.17 0.11 2.59 16 12 H 0.07 1.44 7.89 -2.39 -0.02 1.42 16 13 N -0.58 -15.14 3.00 -769.91 -2.31 -17.45 16 14 C 0.52 17.31 7.64 87.27 0.67 17.98 16 15 O -0.54 -20.00 14.81 -3.25 -0.05 -20.04 16 16 C 0.50 18.05 7.28 87.27 0.64 18.69 16 17 O -0.53 -20.17 12.39 -3.26 -0.04 -20.21 16 18 N -0.68 -26.26 4.95 -464.42 -2.30 -28.56 16 19 C 0.15 6.26 4.50 86.38 0.39 6.65 16 20 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 21 C -0.12 -5.77 8.08 71.98 0.58 -5.18 16 22 C -0.12 -5.79 8.08 71.99 0.58 -5.21 16 23 C -0.53 -27.78 8.01 25.60 0.21 -27.58 16 24 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 25 C 0.03 1.38 5.15 84.66 0.44 1.81 16 26 N -0.90 -48.99 9.35 21.45 0.20 -48.79 16 27 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 29 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 30 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 31 H 0.04 1.09 5.72 -2.39 -0.01 1.07 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 34 H 0.10 0.94 7.79 -2.39 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.59 8.02 -2.38 -0.02 0.57 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.58 6.62 -2.38 -0.02 1.56 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.41 15.63 5.64 -92.71 -0.52 15.11 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 47 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 48 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 49 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 52 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 53 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -60.66 394.30 3.09 -57.57 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.37 Total: 28.61 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.19 Total: 4.29 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.41 Total: -94.80 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.09 Total: -40.26 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -60.66 3.09 -57.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422484282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.036 kcal (2) G-P(sol) polarization free energy of solvation -60.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds