Wall clock time and date at job start Tue Mar 31 2020 20:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.07281 * 2 1 4 4 C 1.55339 * 109.92261 * 238.78226 * 2 1 3 5 5 C 1.53670 * 101.78083 * 263.11214 * 4 2 1 6 6 H 1.09002 * 111.10797 * 79.29093 * 5 4 2 7 7 C 1.51927 * 115.22482 * 206.66591 * 5 4 2 8 8 C 1.53704 * 107.28700 * 174.83440 * 7 5 4 9 9 C 1.52575 * 111.49399 * 301.86598 * 8 7 5 10 10 C 1.53770 * 111.36965 * 54.85706 * 9 8 7 11 11 C 1.51706 * 107.29289 * 302.50287 * 10 9 8 12 12 H 1.08998 * 109.18251 * 306.31292 * 11 10 9 13 13 N 1.45383 * 117.56643 * 181.23905 * 11 10 9 14 14 C 1.34774 * 126.43877 * 30.92477 * 13 11 10 15 15 O 1.21349 * 120.00376 * 354.95389 * 14 13 11 16 16 C 1.49451 * 119.99922 * 174.96008 * 14 13 11 17 17 O 1.21345 * 120.00043 * 352.95268 * 16 14 13 18 18 N 1.34777 * 120.00070 * 173.22837 * 16 14 13 19 19 C 1.46499 * 120.00065 * 179.72596 * 18 16 14 20 20 C 1.52998 * 109.47175 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47303 * 299.99947 * 20 19 18 22 22 C 1.52999 * 109.47049 * 59.99747 * 20 19 18 23 23 C 1.50696 * 109.47407 * 179.97438 * 20 19 18 24 24 H 1.07999 * 119.99709 * 357.31632 * 23 20 19 25 25 C 1.37879 * 120.00078 * 177.32410 * 23 20 19 26 26 N 1.31513 * 120.00211 * 349.60623 * 25 23 20 27 27 Si 1.86799 * 119.99774 * 169.60416 * 25 23 20 28 28 H 1.48507 * 109.47247 * 94.98071 * 27 25 23 29 29 H 1.48496 * 109.47200 * 214.97673 * 27 25 23 30 30 H 1.48501 * 109.47466 * 334.98112 * 27 25 23 31 31 H 1.08996 * 109.47286 * 288.60315 * 1 2 3 32 32 H 1.09000 * 109.47368 * 48.60910 * 1 2 3 33 33 H 1.09006 * 109.46819 * 168.60251 * 1 2 3 34 34 H 1.08996 * 110.96669 * 21.23648 * 4 2 1 35 35 H 1.09000 * 110.96584 * 144.99194 * 4 2 1 36 36 H 1.08999 * 109.89272 * 294.27334 * 7 5 4 37 37 H 1.08996 * 109.89282 * 55.38799 * 7 5 4 38 38 H 1.09001 * 109.07736 * 62.38695 * 8 7 5 39 39 H 1.09004 * 109.07258 * 181.35329 * 8 7 5 40 40 H 1.09000 * 109.09726 * 175.34429 * 9 8 7 41 41 H 1.09000 * 109.10072 * 294.43220 * 9 8 7 42 42 H 1.08996 * 109.88392 * 62.18266 * 10 9 8 43 43 H 1.09002 * 109.88275 * 183.18880 * 10 9 8 44 44 H 0.97002 * 119.99695 * 359.71751 * 18 16 14 45 45 H 1.09000 * 109.47178 * 299.99600 * 19 18 16 46 46 H 1.08998 * 109.47367 * 59.99911 * 19 18 16 47 47 H 1.09008 * 109.47283 * 63.96909 * 21 20 19 48 48 H 1.08996 * 109.47406 * 183.96749 * 21 20 19 49 49 H 1.08996 * 109.47207 * 303.97354 * 21 20 19 50 50 H 1.09000 * 109.47056 * 60.00314 * 22 20 19 51 51 H 1.09007 * 109.47113 * 180.02562 * 22 20 19 52 52 H 1.09000 * 109.47746 * 299.99959 * 22 20 19 53 53 H 0.96996 * 120.00249 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9041 1.0237 0.0000 4 6 2.0593 -0.7569 -1.2490 5 6 2.3358 -2.1552 -0.6746 6 1 1.4152 -2.7318 -0.5849 7 6 3.4095 -2.9512 -1.3970 8 6 3.6282 -4.2488 -0.6027 9 6 4.0350 -3.9598 0.8392 10 6 3.0177 -3.0402 1.5348 11 6 2.9240 -1.7683 0.7132 12 1 3.9235 -1.3552 0.5774 13 7 2.0350 -0.7222 1.1917 14 6 1.7317 -0.4555 2.4775 15 8 2.1455 -1.1774 3.3608 16 6 0.8856 0.7291 2.8155 17 8 0.5781 1.5219 1.9498 18 7 0.4686 0.9199 4.0829 19 6 -0.3558 2.0844 4.4153 20 6 -0.6899 2.0632 5.9082 21 6 -1.4583 0.7827 6.2408 22 6 0.6054 2.1064 6.7214 23 6 -1.5374 3.2614 6.2504 24 1 -1.7743 3.9903 5.4894 25 6 -2.0103 3.4272 7.5349 26 7 -1.8994 2.4497 8.4077 27 14 -2.8083 5.0403 8.0354 28 1 -4.2818 4.9310 7.8857 29 1 -2.4755 5.3388 9.4514 30 1 -2.3024 6.1334 7.1669 31 1 -0.3633 0.3278 0.9739 32 1 -0.3634 0.6795 -0.7710 33 1 -0.3633 -1.0075 -0.2031 34 1 1.3003 -0.7992 -2.0301 35 1 2.9760 -0.3004 -1.6222 36 1 3.0789 -3.1869 -2.4085 37 1 4.3356 -2.3775 -1.4326 38 1 2.7040 -4.8268 -0.6031 39 1 4.4126 -4.8330 -1.0838 40 1 4.0988 -4.9000 1.3869 41 1 5.0123 -3.4773 0.8442 42 1 2.0449 -3.5298 1.5790 43 1 3.3597 -2.8042 2.5425 44 1 0.7144 0.2861 4.7748 45 1 0.1915 2.9967 4.1780 46 1 -1.2788 2.0534 3.8363 47 1 -0.8195 -0.0818 6.0599 48 1 -1.7576 0.8003 7.2887 49 1 -2.3452 0.7171 5.6107 50 1 1.1528 3.0187 6.4845 51 1 0.3674 2.0909 7.7850 52 1 1.2188 1.2400 6.4741 53 1 -2.2324 2.5662 9.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422484285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:27 Heat of formation + Delta-G solvation = -90.686983 kcal Electronic energy + Delta-G solvation = -30942.968721 eV Core-core repulsion = 27006.530031 eV Total energy + Delta-G solvation = -3936.438690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.30331 -40.72126 -39.16003 -38.29301 -36.92405 -35.07420 -33.43528 -32.76488 -31.48642 -30.74695 -27.94027 -27.61423 -27.23532 -26.94752 -25.50744 -23.11260 -22.81821 -22.06888 -20.96567 -20.85862 -20.49135 -18.60212 -18.00561 -17.76787 -17.18180 -16.78767 -16.62534 -16.23830 -16.03678 -15.60186 -15.29015 -15.22782 -14.97973 -14.79418 -14.67705 -14.21984 -14.10958 -13.97132 -13.58589 -13.41764 -13.37663 -13.15167 -13.07761 -12.92519 -12.75917 -12.69868 -12.62918 -12.32064 -12.26945 -12.14994 -12.07239 -11.81944 -11.64259 -11.51339 -11.42385 -11.31902 -11.20344 -10.95204 -10.79374 -10.43322 -10.36773 -10.05699 -9.81278 -8.00567 -6.19263 0.35403 1.28514 1.42827 1.46697 1.55732 2.12287 2.40606 2.51457 3.18854 3.25296 3.44861 3.63552 3.73693 4.05299 4.08258 4.11975 4.22770 4.32700 4.35423 4.42227 4.45275 4.49666 4.52815 4.57737 4.65203 4.69773 4.84897 4.89722 4.91339 4.97410 5.00571 5.04046 5.04976 5.09269 5.15086 5.17418 5.18643 5.24626 5.28623 5.31709 5.35400 5.39689 5.45088 5.50613 5.58926 5.61133 5.65424 6.02378 6.10845 6.22683 6.28055 6.45238 6.69429 6.84980 6.98188 7.48892 8.94932 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025971 B = 0.002520 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.874013 B =11107.758110 C =11807.887816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.093 4.093 6 H 0.082 0.918 7 C -0.101 4.101 8 C -0.119 4.119 9 C -0.111 4.111 10 C -0.118 4.118 11 C 0.121 3.879 12 H 0.080 0.920 13 N -0.580 5.580 14 C 0.521 3.479 15 O -0.543 6.543 16 C 0.492 3.508 17 O -0.528 6.528 18 N -0.684 5.684 19 C 0.147 3.853 20 C 0.051 3.949 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.527 4.527 24 H 0.052 0.948 25 C 0.028 3.972 26 N -0.899 5.899 27 Si 0.947 3.053 28 H -0.280 1.280 29 H -0.284 1.284 30 H -0.272 1.272 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.410 0.590 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.021 0.979 48 H 0.084 0.916 49 H 0.017 0.983 50 H 0.030 0.970 51 H 0.049 0.951 52 H 0.031 0.969 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -12.379 -21.558 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.112 4.112 6 H 0.100 0.900 7 C -0.139 4.139 8 C -0.157 4.157 9 C -0.149 4.149 10 C -0.156 4.156 11 C 0.018 3.982 12 H 0.097 0.903 13 N -0.313 5.313 14 C 0.304 3.696 15 O -0.421 6.421 16 C 0.273 3.727 17 O -0.406 6.406 18 N -0.336 5.336 19 C 0.024 3.976 20 C 0.050 3.950 21 C -0.191 4.191 22 C -0.177 4.177 23 C -0.566 4.566 24 H 0.070 0.930 25 C -0.172 4.172 26 N -0.538 5.538 27 Si 0.774 3.226 28 H -0.206 1.206 29 H -0.209 1.209 30 H -0.196 1.196 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.248 0.752 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.102 0.898 49 H 0.036 0.964 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.050 0.950 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.232 -12.198 -21.413 27.082 hybrid contribution -0.660 0.803 1.387 1.733 sum 10.572 -11.394 -20.026 25.350 Atomic orbital electron populations 1.22375 0.94531 1.01744 1.03705 1.22308 0.94998 0.96181 0.83608 0.90464 1.22694 1.03153 0.94041 0.95123 1.22301 0.99547 0.96225 0.93123 0.89998 1.21441 0.97714 0.95535 0.99163 1.21571 1.02149 0.97715 0.94224 1.21522 0.98037 0.99042 0.96322 1.21614 1.00258 0.94576 0.99191 1.21921 0.93281 0.87777 0.95198 0.90260 1.48256 1.45387 1.33243 1.04428 1.19815 0.81687 0.85321 0.82771 1.90714 1.54478 1.49736 1.47172 1.20221 0.81698 0.87150 0.83587 1.90672 1.56806 1.46198 1.46949 1.46065 1.50671 1.27716 1.09124 1.21521 0.92582 0.85692 0.97815 1.18374 0.93322 0.94857 0.88407 1.21913 0.97599 0.95224 1.04361 1.21656 0.96560 0.97877 1.01606 1.21216 1.32352 1.07418 0.95570 0.92994 1.25504 0.96087 0.98886 0.96712 1.69878 1.47408 1.31377 1.05128 0.85716 0.78491 0.80996 0.77435 1.20594 1.20938 1.19649 0.92786 0.90269 0.92483 0.87787 0.88700 0.89360 0.90642 0.92151 0.90220 0.91313 0.91528 0.92801 0.92403 0.75230 0.92768 0.92886 0.95993 0.89772 0.96360 0.95128 0.93244 0.94978 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.59 71.98 0.62 -3.26 16 2 C 0.13 2.81 2.88 45.47 0.13 2.94 16 3 H 0.08 1.84 7.63 -2.39 -0.02 1.83 16 4 C -0.11 -1.44 6.05 31.62 0.19 -1.25 16 5 C -0.09 -1.26 2.64 -10.02 -0.03 -1.29 16 6 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.10 -0.90 5.61 30.48 0.17 -0.73 16 8 C -0.12 -1.20 5.84 30.69 0.18 -1.02 16 9 C -0.11 -1.58 5.84 30.71 0.18 -1.40 16 10 C -0.12 -2.51 4.97 30.43 0.15 -2.36 16 11 C 0.12 2.44 2.54 45.68 0.12 2.55 16 12 H 0.08 1.52 7.89 -2.39 -0.02 1.50 16 13 N -0.58 -15.09 3.06 -767.08 -2.35 -17.43 16 14 C 0.52 17.20 7.64 87.27 0.67 17.86 16 15 O -0.54 -19.79 14.59 -3.24 -0.05 -19.84 16 16 C 0.49 17.77 6.98 87.27 0.61 18.37 16 17 O -0.53 -19.70 12.11 -3.23 -0.04 -19.74 16 18 N -0.68 -26.04 4.98 -464.42 -2.31 -28.35 16 19 C 0.15 6.22 4.50 86.38 0.39 6.61 16 20 C 0.05 2.41 0.51 -52.93 -0.03 2.38 16 21 C -0.13 -6.30 8.04 71.98 0.58 -5.72 16 22 C -0.12 -5.47 8.11 71.98 0.58 -4.88 16 23 C -0.53 -27.70 8.00 25.60 0.20 -27.49 16 24 H 0.05 2.73 7.77 -2.91 -0.02 2.71 16 25 C 0.03 1.47 5.10 84.66 0.43 1.90 16 26 N -0.90 -48.66 9.48 21.45 0.20 -48.46 16 27 Si 0.95 42.39 29.55 68.60 2.03 44.42 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 31 H 0.05 1.67 4.48 -2.62 -0.01 1.66 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 34 H 0.10 0.99 7.86 -2.39 -0.02 0.97 16 35 H 0.09 0.94 8.13 -2.39 -0.02 0.92 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.60 7.98 -2.39 -0.02 0.58 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 43 H 0.06 1.57 6.56 -2.39 -0.02 1.55 16 44 H 0.41 15.52 5.68 -92.71 -0.53 14.99 16 45 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.02 0.91 6.98 -2.38 -0.02 0.90 16 48 H 0.08 4.42 5.40 -2.39 -0.01 4.41 16 49 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.05 2.48 6.71 -2.38 -0.02 2.46 16 52 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 53 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -59.94 392.94 3.00 -56.94 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.36 Total: 29.22 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.15 Total: 3.24 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.45 Total: -94.24 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.09 Total: -39.58 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.94 3.00 -56.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422484285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.748 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds