Wall clock time and date at job start Tue Mar 31 2020 20:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.89674 * 2 1 4 4 C 1.54482 * 110.04959 * 238.83696 * 2 1 3 5 5 C 1.55960 * 102.65772 * 217.77114 * 4 2 1 6 6 H 1.09006 * 112.77489 * 156.80618 * 5 4 2 7 7 C 1.53006 * 106.58018 * 280.63646 * 5 4 2 8 8 C 1.52336 * 111.00395 * 162.25522 * 7 5 4 9 9 C 1.53244 * 109.25530 * 299.33855 * 8 7 5 10 10 C 1.52867 * 108.41696 * 62.58609 * 9 8 7 11 11 C 1.51177 * 111.24271 * 300.78263 * 10 9 8 12 12 H 1.08994 * 108.09367 * 173.55873 * 11 10 9 13 13 N 1.46518 * 113.00828 * 293.63648 * 11 10 9 14 14 C 1.34776 * 126.02202 * 329.82437 * 13 11 10 15 15 O 1.21341 * 120.00258 * 0.24724 * 14 13 11 16 16 C 1.49457 * 120.00045 * 180.25183 * 14 13 11 17 17 O 1.21346 * 119.99829 * 353.70643 * 16 14 13 18 18 N 1.34769 * 119.99894 * 173.70576 * 16 14 13 19 19 C 1.46508 * 119.99745 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46948 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47424 * 300.00106 * 20 19 18 22 22 C 1.52995 * 109.47101 * 60.00068 * 20 19 18 23 23 C 1.50697 * 109.46925 * 179.97438 * 20 19 18 24 24 H 1.08000 * 120.00325 * 0.02562 * 23 20 19 25 25 C 1.37884 * 119.99964 * 180.02562 * 23 20 19 26 26 N 1.31520 * 119.99654 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 120.00059 * 180.02562 * 25 23 20 28 28 H 1.48494 * 109.47191 * 89.99789 * 27 25 23 29 29 H 1.48503 * 109.46844 * 210.00055 * 27 25 23 30 30 H 1.48498 * 109.46669 * 329.99604 * 27 25 23 31 31 H 1.09001 * 109.47115 * 284.07288 * 1 2 3 32 32 H 1.08997 * 109.47061 * 44.06568 * 1 2 3 33 33 H 1.08997 * 109.47268 * 164.06772 * 1 2 3 34 34 H 1.09004 * 110.77348 * 336.06288 * 4 2 1 35 35 H 1.09000 * 110.77147 * 99.47983 * 4 2 1 36 36 H 1.09000 * 109.23421 * 283.45464 * 7 5 4 37 37 H 1.09006 * 109.23460 * 42.83227 * 7 5 4 38 38 H 1.09007 * 109.80860 * 179.10267 * 8 7 5 39 39 H 1.09002 * 108.82642 * 58.97867 * 8 7 5 40 40 H 1.08995 * 109.67551 * 302.85228 * 9 8 7 41 41 H 1.09008 * 109.70199 * 182.33612 * 9 8 7 42 42 H 1.09002 * 109.12414 * 180.33112 * 10 9 8 43 43 H 1.09002 * 109.12658 * 61.24364 * 10 9 8 44 44 H 0.96996 * 120.00373 * 0.02562 * 18 16 14 45 45 H 1.08997 * 109.47004 * 299.99938 * 19 18 16 46 46 H 1.09000 * 109.46737 * 59.99929 * 19 18 16 47 47 H 1.09005 * 109.46983 * 59.99625 * 21 20 19 48 48 H 1.08995 * 109.47601 * 180.02562 * 21 20 19 49 49 H 1.09000 * 109.47127 * 300.00469 * 21 20 19 50 50 H 1.09007 * 109.47308 * 59.99708 * 22 20 19 51 51 H 1.09001 * 109.47530 * 179.97438 * 22 20 19 52 52 H 1.09005 * 109.47666 * 300.00223 * 22 20 19 53 53 H 0.96996 * 119.99375 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0596 -0.7510 -1.2418 5 6 3.3067 -1.5013 -0.6813 6 1 3.5751 -2.3755 -1.2746 7 6 4.4386 -0.4742 -0.6101 8 6 5.5551 -0.9549 0.3081 9 6 4.9968 -1.1536 1.7213 10 6 3.9272 -2.2445 1.6691 11 6 2.8075 -1.8690 0.7253 12 1 2.1370 -2.7239 0.6385 13 7 2.0318 -0.7151 1.1874 14 6 1.8192 -0.3658 2.4716 15 8 2.2947 -1.0311 3.3680 16 6 0.9978 0.8411 2.7916 17 8 0.6181 1.5706 1.8993 18 7 0.6789 1.1192 4.0711 19 6 -0.1259 2.3026 4.3849 20 6 -0.3433 2.3852 5.8971 21 6 -1.0743 1.1296 6.3767 22 6 1.0107 2.4876 6.6021 23 6 -1.1705 3.6028 6.2199 24 1 -1.5078 4.2525 5.4258 25 6 -1.4967 3.8874 7.5290 26 7 -1.0864 3.0959 8.4959 27 14 -2.5227 5.3963 7.9290 28 1 -3.9629 5.0350 7.9093 29 1 -2.1571 5.9002 9.2772 30 1 -2.2635 6.4531 6.9185 31 1 -0.3633 0.2499 0.9968 32 1 -0.3633 0.7384 -0.7147 33 1 -0.3634 -0.9882 -0.2821 34 1 1.3171 -1.4580 -1.6119 35 1 2.3498 -0.0489 -2.0235 36 1 4.8325 -0.3039 -1.6121 37 1 4.0483 0.4635 -0.2143 38 1 6.3571 -0.2170 0.3320 39 1 5.9382 -1.9026 -0.0703 40 1 4.5544 -0.2225 2.0754 41 1 5.7989 -1.4578 2.3939 42 1 3.5177 -2.3912 2.6686 43 1 4.3826 -3.1752 1.3308 44 1 0.9827 0.5363 4.7844 45 1 0.3947 3.1971 4.0429 46 1 -1.0906 2.2294 3.8829 47 1 -0.4755 0.2491 6.1432 48 1 -1.2296 1.1886 7.4539 49 1 -2.0388 1.0566 5.8743 50 1 1.5315 3.3822 6.2605 51 1 0.8558 2.5469 7.6795 52 1 1.6095 1.6072 6.3687 53 1 -1.3156 3.2964 9.4168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422484286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:31 Heat of formation + Delta-G solvation = -90.525840 kcal Electronic energy + Delta-G solvation = -31435.285393 eV Core-core repulsion = 27498.853691 eV Total energy + Delta-G solvation = -3936.431702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.40277 -40.69755 -39.05836 -38.27499 -36.59128 -35.06583 -33.47416 -32.74605 -31.71886 -30.76137 -27.92361 -27.62024 -27.23368 -26.74302 -25.38318 -23.58809 -22.88125 -22.34846 -21.05710 -20.67631 -19.91017 -18.63818 -17.88638 -17.56127 -17.29234 -16.66223 -16.63698 -16.48041 -15.96660 -15.71934 -15.41078 -15.16141 -14.93995 -14.82012 -14.55381 -14.22595 -14.06989 -13.82915 -13.67735 -13.41712 -13.24351 -13.17457 -13.12401 -12.73932 -12.70544 -12.60782 -12.59518 -12.44620 -12.34472 -12.27479 -12.14052 -11.98375 -11.65918 -11.51853 -11.34807 -11.30501 -11.04096 -10.97835 -10.75432 -10.42018 -10.28319 -10.07250 -9.72820 -8.03192 -6.20043 0.39503 1.31660 1.43266 1.46075 1.54396 2.16321 2.42167 2.54921 3.20612 3.29231 3.54107 3.59052 3.75149 4.01715 4.09458 4.16692 4.30653 4.32918 4.35625 4.44792 4.48551 4.52643 4.55545 4.62795 4.64912 4.67330 4.82144 4.89841 4.94415 5.00744 5.01042 5.04293 5.05517 5.10928 5.14004 5.17227 5.18094 5.21640 5.25510 5.32600 5.34677 5.41765 5.48562 5.53850 5.61746 5.62453 5.65408 6.07988 6.13195 6.16809 6.31832 6.39010 6.72892 6.84806 7.01111 7.48081 8.96214 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.002767 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.374394 B =10117.693469 C =10669.959138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.069 0.931 4 C -0.118 4.118 5 C -0.084 4.084 6 H 0.133 0.867 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.112 4.112 10 C -0.135 4.135 11 C 0.134 3.866 12 H 0.076 0.924 13 N -0.574 5.574 14 C 0.522 3.478 15 O -0.539 6.539 16 C 0.490 3.510 17 O -0.531 6.531 18 N -0.684 5.684 19 C 0.147 3.853 20 C 0.052 3.948 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.527 4.527 24 H 0.051 0.949 25 C 0.026 3.974 26 N -0.902 5.902 27 Si 0.949 3.051 28 H -0.278 1.278 29 H -0.285 1.285 30 H -0.273 1.273 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.410 0.590 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.023 0.977 50 H 0.022 0.978 51 H 0.064 0.936 52 H 0.027 0.973 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -12.188 -21.178 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.156 4.156 5 C -0.103 4.103 6 H 0.150 0.850 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.150 4.150 10 C -0.172 4.172 11 C 0.032 3.968 12 H 0.094 0.906 13 N -0.307 5.307 14 C 0.305 3.695 15 O -0.418 6.418 16 C 0.271 3.729 17 O -0.409 6.409 18 N -0.337 5.337 19 C 0.024 3.976 20 C 0.051 3.949 21 C -0.180 4.180 22 C -0.180 4.180 23 C -0.566 4.566 24 H 0.070 0.930 25 C -0.173 4.173 26 N -0.540 5.540 27 Si 0.776 3.224 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.197 1.197 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.248 0.752 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.082 0.918 49 H 0.042 0.958 50 H 0.041 0.959 51 H 0.083 0.917 52 H 0.046 0.954 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.628 -11.996 -21.051 26.458 hybrid contribution -0.731 1.001 1.361 1.841 sum 9.897 -10.995 -19.689 24.627 Atomic orbital electron populations 1.22275 0.94534 1.01878 1.02800 1.21961 0.94786 0.96224 0.84268 0.91296 1.23114 0.97496 0.99852 0.95129 1.22445 0.94795 0.99800 0.93262 0.84953 1.21486 0.95375 0.97603 1.00587 1.21450 0.97633 1.02260 0.93882 1.21410 0.97862 0.97713 0.97989 1.21519 0.95520 0.99516 1.00659 1.21394 0.93037 0.87404 0.94929 0.90577 1.48282 1.49695 1.28602 1.04132 1.19698 0.81751 0.85178 0.82886 1.90670 1.51154 1.53712 1.46222 1.20337 0.81793 0.86973 0.83758 1.90694 1.53826 1.50605 1.45818 1.46057 1.51924 1.28237 1.07439 1.21494 0.93046 0.85102 0.97925 1.18360 0.93634 0.94629 0.88273 1.21691 0.97730 0.95631 1.02951 1.21693 0.96061 0.97168 1.03093 1.21248 1.33216 1.09411 0.92714 0.93041 1.25513 0.96723 0.98855 0.96253 1.69931 1.46026 1.38170 0.99887 0.85694 0.79101 0.80323 0.77314 1.20431 1.21040 1.19729 0.93545 0.90934 0.91885 0.88735 0.88007 0.89389 0.94285 0.92009 0.90007 0.95612 0.91996 0.91385 0.88840 0.75229 0.93063 0.92827 0.95388 0.91764 0.95775 0.95911 0.91747 0.95429 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.65 71.98 0.62 -2.99 16 2 C 0.13 2.77 2.08 45.32 0.09 2.86 16 3 H 0.07 1.73 7.17 -2.39 -0.02 1.71 16 4 C -0.12 -1.43 5.84 32.12 0.19 -1.24 16 5 C -0.08 -0.99 3.65 -9.52 -0.03 -1.02 16 6 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 7 C -0.11 -1.51 4.90 30.38 0.15 -1.37 16 8 C -0.11 -1.66 5.89 30.46 0.18 -1.48 16 9 C -0.11 -2.33 5.88 30.63 0.18 -2.15 16 10 C -0.13 -2.71 4.82 29.96 0.14 -2.57 16 11 C 0.13 2.50 2.85 44.64 0.13 2.63 16 12 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 13 N -0.57 -14.32 2.76 -772.60 -2.13 -16.46 16 14 C 0.52 16.86 7.00 87.27 0.61 17.47 16 15 O -0.54 -19.06 13.98 -3.22 -0.04 -19.11 16 16 C 0.49 17.70 7.08 87.27 0.62 18.32 16 17 O -0.53 -19.96 11.97 -3.23 -0.04 -20.00 16 18 N -0.68 -26.10 4.95 -464.40 -2.30 -28.40 16 19 C 0.15 6.28 4.50 86.38 0.39 6.67 16 20 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 21 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 22 C -0.12 -5.74 8.08 71.98 0.58 -5.15 16 23 C -0.53 -27.86 8.01 25.60 0.21 -27.65 16 24 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 25 C 0.03 1.39 5.15 84.66 0.44 1.83 16 26 N -0.90 -48.94 9.35 21.45 0.20 -48.74 16 27 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 30 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 31 H 0.05 1.41 4.89 -2.39 -0.01 1.40 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.21 7.76 -2.39 -0.02 1.19 16 34 H 0.09 0.89 7.62 -2.38 -0.02 0.87 16 35 H 0.10 0.94 7.96 -2.39 -0.02 0.92 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.04 0.73 6.95 -2.38 -0.02 0.71 16 38 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.02 0.70 7.50 -2.39 -0.02 0.68 16 41 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 1.84 5.65 -2.39 -0.01 1.82 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.41 15.50 5.65 -92.71 -0.52 14.98 16 45 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.03 1.15 6.86 -2.38 -0.02 1.13 16 48 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 49 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 52 H 0.03 1.15 6.86 -2.38 -0.02 1.13 16 53 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -60.59 387.61 3.13 -57.46 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.38 Total: 29.16 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.04 Total: 1.45 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.23 Total: -93.59 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.08 Total: -39.11 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -60.59 3.13 -57.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422484286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.070 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds