Wall clock time and date at job start Tue Mar 31 2020 19:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.63267 * 2 1 4 4 C 1.53003 * 109.79438 * 120.50152 * 2 1 3 5 5 C 1.50101 * 110.19540 * 169.33984 * 4 2 1 6 6 C 1.31551 * 123.79263 * 343.31854 * 5 4 2 7 7 C 1.47099 * 118.10451 * 180.14234 * 6 5 4 8 8 O 1.21611 * 119.99945 * 44.75134 * 7 6 5 9 9 N 1.34773 * 120.00137 * 224.74373 * 7 6 5 10 10 C 1.46506 * 120.00106 * 5.86806 * 9 7 6 11 11 C 1.50701 * 109.47149 * 271.13101 * 10 9 7 12 12 H 1.07993 * 119.99693 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99755 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99705 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00167 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46958 * 90.00372 * 15 13 11 17 17 H 1.48497 * 109.47174 * 210.00575 * 15 13 11 18 18 H 1.48504 * 109.47141 * 330.00886 * 15 13 11 19 19 C 1.46501 * 120.00330 * 185.86946 * 9 7 6 20 20 C 1.53004 * 109.46655 * 270.00088 * 19 9 7 21 21 N 1.46906 * 109.46657 * 179.97438 * 20 19 9 22 22 C 1.47021 * 110.99802 * 46.32317 * 21 20 19 23 23 C 1.53095 * 109.25781 * 182.34659 * 22 21 20 24 24 O 1.43015 * 109.29053 * 303.21963 * 23 22 21 25 25 C 1.43011 * 113.73996 * 58.64851 * 24 23 22 26 26 C 1.47018 * 110.99751 * 170.00120 * 21 20 19 27 27 C 1.50097 * 123.78764 * 359.86342 * 6 5 4 28 28 C 1.53006 * 110.13585 * 343.11133 * 27 6 5 29 29 H 1.09004 * 109.47370 * 180.38923 * 1 2 3 30 30 H 1.09007 * 109.47185 * 300.38792 * 1 2 3 31 31 H 1.09001 * 109.47424 * 60.38377 * 1 2 3 32 32 H 1.08999 * 109.36083 * 289.74957 * 4 2 1 33 33 H 1.09000 * 109.36334 * 49.47840 * 4 2 1 34 34 H 1.08006 * 118.10237 * 163.03545 * 5 4 2 35 35 H 1.09008 * 109.46713 * 31.12904 * 10 9 7 36 36 H 1.08994 * 109.47356 * 151.12437 * 10 9 7 37 37 H 0.97004 * 119.99624 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47333 * 150.00207 * 19 9 7 39 39 H 1.08995 * 109.46984 * 29.99960 * 19 9 7 40 40 H 1.09001 * 109.47153 * 60.00009 * 20 19 9 41 41 H 1.08995 * 109.47321 * 299.99666 * 20 19 9 42 42 H 1.09003 * 109.47029 * 62.43503 * 22 21 20 43 43 H 1.09009 * 109.54237 * 302.30685 * 22 21 20 44 44 H 1.08991 * 109.50769 * 183.25805 * 23 22 21 45 45 H 1.09001 * 109.50090 * 63.17148 * 23 22 21 46 46 H 1.09002 * 109.51336 * 61.26377 * 25 24 23 47 47 H 1.09005 * 109.50782 * 181.34880 * 25 24 23 48 48 H 1.08996 * 109.50404 * 57.67373 * 26 21 20 49 49 H 1.09004 * 109.50450 * 297.54615 * 26 21 20 50 50 H 1.08995 * 109.36236 * 103.31740 * 27 6 5 51 51 H 1.09005 * 109.35892 * 222.90473 * 27 6 5 52 52 H 1.09001 * 109.62720 * 169.45815 * 28 27 6 53 53 H 1.08997 * 109.63228 * 290.04290 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0481 -0.7307 1.2404 5 6 3.5262 -0.9647 1.1243 6 6 4.1935 -0.8817 -0.0063 7 6 5.6414 -1.1393 0.0231 8 8 6.0775 -2.0890 0.6451 9 7 6.4848 -0.3231 -0.6394 10 6 5.9757 0.8916 -1.2811 11 6 5.5419 0.5722 -2.6885 12 1 5.6364 -0.4348 -3.0672 13 6 5.0254 1.5657 -3.4930 14 7 4.6474 1.2870 -4.7213 15 14 4.8626 3.3076 -2.8380 16 1 6.1075 4.0637 -3.1278 17 1 3.7120 3.9779 -3.4951 18 1 4.6392 3.2658 -1.3705 19 6 7.9106 -0.6503 -0.7178 20 6 8.6438 -0.0232 0.4696 21 7 10.0735 -0.3518 0.3913 22 6 10.5903 -0.1346 -0.9678 23 6 12.0647 -0.5438 -1.0189 24 8 12.7946 0.1961 -0.0364 25 6 12.3181 0.0064 1.2986 26 6 10.8466 0.4222 1.3734 27 6 3.5618 -0.5451 -1.3257 28 6 2.0451 -0.7307 -1.2461 29 1 -0.3634 -1.0277 0.0070 30 1 -0.3634 0.5199 0.8865 31 1 -0.3634 0.5079 -0.8934 32 1 1.8435 -0.1291 2.1260 33 1 1.5418 -1.6917 1.3316 34 1 4.0743 -1.2113 2.0217 35 1 5.1245 1.2716 -0.7159 36 1 6.7616 1.6464 -1.3055 37 1 4.2836 1.9860 -5.2872 38 1 8.3228 -0.2582 -1.6476 39 1 8.0369 -1.7326 -0.6924 40 1 8.2316 -0.4153 1.3994 41 1 8.5176 1.0591 0.4442 42 1 10.4959 0.9197 -1.2282 43 1 10.0205 -0.7372 -1.6753 44 1 12.4676 -0.3304 -2.0088 45 1 12.1537 -1.6102 -0.8118 46 1 12.4139 -1.0440 1.5736 47 1 12.9049 0.6172 1.9847 48 1 10.4633 0.2258 2.3747 49 1 10.7570 1.4855 1.1508 50 1 3.7862 0.4907 -1.5800 51 1 3.9661 -1.2002 -2.0974 52 1 1.5776 -0.3105 -2.1366 53 1 1.8095 -1.7923 -1.1717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455227667.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:43 Heat of formation + Delta-G solvation = -79.098127 kcal Electronic energy + Delta-G solvation = -30949.301793 eV Core-core repulsion = 27013.365634 eV Total energy + Delta-G solvation = -3935.936159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.44210 -40.53805 -39.00887 -37.55571 -36.54154 -34.59577 -33.73044 -32.29733 -31.77537 -31.03783 -29.63415 -28.17219 -26.93118 -25.09737 -24.60735 -23.90246 -23.64539 -22.12841 -21.32873 -20.55039 -19.08618 -18.93114 -17.95035 -17.73092 -17.23919 -17.01426 -16.38481 -16.26033 -16.05693 -15.89860 -15.69949 -15.30495 -15.20443 -15.09757 -14.76709 -14.57976 -14.32811 -14.12515 -13.84127 -13.74199 -13.60367 -13.40694 -13.19705 -13.13112 -12.93289 -12.73587 -12.59314 -12.40382 -12.33151 -12.18746 -12.11193 -11.90505 -11.81159 -11.59244 -11.49683 -11.30531 -11.07757 -10.72816 -10.71444 -10.63944 -9.82002 -9.52595 -9.49261 -8.26726 -6.26353 0.70356 1.35109 1.39209 1.45799 1.98116 2.15613 2.32524 2.79085 2.95331 3.06001 3.57576 3.77310 3.82214 3.86817 3.94268 3.99666 4.01433 4.16265 4.21852 4.29260 4.30705 4.36148 4.37810 4.44794 4.53706 4.61999 4.66784 4.67736 4.69159 4.75064 4.77876 4.78875 4.83784 4.86554 4.92259 4.93183 4.98162 5.01773 5.11839 5.21056 5.30718 5.38370 5.39163 5.47200 5.54267 5.66238 5.67928 5.81711 5.87929 5.97234 6.13901 6.18838 6.54039 6.70523 7.18108 7.31762 8.88583 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.003637 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.543054 B = 7696.437781 C = 9231.589087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.063 0.937 4 C -0.077 4.077 5 C -0.094 4.094 6 C -0.167 4.167 7 C 0.546 3.454 8 O -0.591 6.591 9 N -0.590 5.590 10 C 0.217 3.783 11 C -0.516 4.516 12 H 0.038 0.962 13 C 0.033 3.967 14 N -0.932 5.932 15 Si 0.917 3.083 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.241 1.241 19 C 0.121 3.879 20 C 0.060 3.940 21 N -0.540 5.540 22 C 0.007 3.993 23 C 0.067 3.933 24 O -0.403 6.403 25 C 0.065 3.935 26 C 0.017 3.983 27 C -0.069 4.069 28 C -0.111 4.111 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.121 0.879 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.097 0.903 51 H 0.039 0.961 52 H 0.058 0.942 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 0.849 12.705 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.169 4.169 7 C 0.337 3.663 8 O -0.474 6.474 9 N -0.319 5.319 10 C 0.095 3.905 11 C -0.555 4.555 12 H 0.056 0.944 13 C -0.167 4.167 14 N -0.571 5.571 15 Si 0.741 3.259 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.165 1.165 19 C -0.002 4.002 20 C -0.069 4.069 21 N -0.266 5.266 22 C -0.121 4.121 23 C -0.009 4.009 24 O -0.321 6.321 25 C -0.011 4.011 26 C -0.111 4.111 27 C -0.106 4.106 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.138 0.862 48 H 0.114 0.886 49 H 0.056 0.944 50 H 0.115 0.885 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.199 0.082 12.909 13.300 hybrid contribution -0.250 1.290 -0.815 1.546 sum 2.948 1.371 12.094 12.523 Atomic orbital electron populations 1.21766 0.93137 1.02442 1.02264 1.21209 0.96874 0.99068 0.94053 0.91859 1.20611 0.89944 1.01902 0.98873 1.22810 0.97663 0.94868 0.95969 1.20874 0.91875 1.06076 0.98114 1.19129 0.88152 0.81466 0.77542 1.90680 1.79579 1.31793 1.45362 1.47866 1.07488 1.24781 1.51767 1.19802 0.95321 0.82999 0.92372 1.21246 1.41474 0.96212 0.96563 0.94413 1.25447 0.94660 1.02004 0.94578 1.70008 1.43431 1.34990 1.08714 0.86172 0.78490 0.80727 0.80545 1.19554 1.20746 1.16463 1.21422 0.80016 1.00568 0.98183 1.22256 0.87616 0.97928 0.99072 1.62261 1.02056 1.56632 1.05613 1.22962 0.97838 1.00328 0.90959 1.22738 0.88928 0.96072 0.93193 1.87945 1.57204 1.69974 1.17013 1.22793 0.92337 1.02095 0.83911 1.22884 0.95406 0.95649 0.97203 1.20739 0.94604 1.03684 0.91552 1.21686 0.94450 1.00405 0.98356 0.91919 0.91072 0.92919 0.88174 0.88791 0.87364 0.93725 0.94575 0.92355 0.90124 0.91373 0.91232 0.94627 0.94485 0.89267 0.86772 0.91773 0.91857 0.86159 0.88611 0.94357 0.88473 0.94231 0.92343 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.20 71.98 0.66 -2.09 16 2 C -0.09 -2.41 2.76 -10.67 -0.03 -2.44 16 3 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 4 C -0.08 -1.79 5.43 29.66 0.16 -1.63 16 5 C -0.09 -2.93 9.37 24.94 0.23 -2.70 16 6 C -0.17 -6.38 4.70 -18.29 -0.09 -6.47 16 7 C 0.55 23.40 7.06 86.57 0.61 24.02 16 8 O -0.59 -27.51 16.40 -4.07 -0.07 -27.58 16 9 N -0.59 -24.44 2.46 -830.42 -2.04 -26.48 16 10 C 0.22 9.31 3.76 85.63 0.32 9.63 16 11 C -0.52 -26.11 6.31 25.60 0.16 -25.94 16 12 H 0.04 2.22 7.46 -2.91 -0.02 2.20 16 13 C 0.03 1.69 5.07 84.66 0.43 2.12 16 14 N -0.93 -52.78 13.96 21.45 0.30 -52.48 16 15 Si 0.92 38.81 27.39 68.60 1.88 40.69 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 19 C 0.12 4.48 4.63 86.38 0.40 4.88 16 20 C 0.06 1.91 5.60 86.30 0.48 2.39 16 21 N -0.54 -14.92 4.87 -895.17 -4.36 -19.28 16 22 C 0.01 0.19 4.94 86.31 0.43 0.61 16 23 C 0.07 1.49 7.01 72.01 0.50 2.00 16 24 O -0.40 -9.62 10.83 -148.98 -1.61 -11.23 16 25 C 0.07 1.27 7.01 72.01 0.50 1.78 16 26 C 0.02 0.37 5.63 86.31 0.49 0.86 16 27 C -0.07 -2.79 3.74 29.66 0.11 -2.68 16 28 C -0.11 -3.62 5.29 30.72 0.16 -3.46 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.93 8.11 -2.39 -0.02 1.91 16 34 H 0.11 3.34 7.80 -2.91 -0.02 3.32 16 35 H 0.04 1.89 5.06 -2.38 -0.01 1.88 16 36 H 0.04 1.49 7.49 -2.39 -0.02 1.47 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.08 2.95 6.21 -2.39 -0.01 2.94 16 39 H 0.07 2.70 7.51 -2.39 -0.02 2.68 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 2.42 6.05 -2.38 -0.01 2.41 16 44 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.10 4.30 4.04 -2.39 -0.01 4.29 16 51 H 0.04 1.88 6.99 -2.38 -0.02 1.86 16 52 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 Total: -1.00 -63.70 399.37 0.45 -63.24 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.82 Total: 32.23 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.54 Total: 0.89 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -6.11 Total: -98.24 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.68 Total: -38.81 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.88 Total: 40.69 kcal Total: -63.70 0.45 -63.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455227667.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.855 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds