Wall clock time and date at job start Tue Mar 31 2020 19:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.63267 * 2 1 4 4 C 1.53008 * 109.79554 * 239.50201 * 2 1 3 5 5 C 1.50103 * 110.07406 * 190.24116 * 4 2 1 6 6 C 1.31544 * 123.78815 * 17.65946 * 5 4 2 7 7 C 1.47110 * 118.10678 * 179.29705 * 6 5 4 8 8 O 1.21615 * 119.99486 * 7.49705 * 7 6 5 9 9 N 1.34775 * 120.00293 * 187.49173 * 7 6 5 10 10 C 1.46501 * 119.99551 * 21.45441 * 9 7 6 11 11 C 1.50700 * 109.46891 * 273.37302 * 10 9 7 12 12 H 1.07991 * 120.00409 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99730 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99883 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00092 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47125 * 90.00080 * 15 13 11 17 17 H 1.48497 * 109.47367 * 210.00420 * 15 13 11 18 18 H 1.48502 * 109.47140 * 330.00326 * 15 13 11 19 19 C 1.46497 * 120.00118 * 201.44953 * 9 7 6 20 20 C 1.53005 * 109.47117 * 270.00531 * 19 9 7 21 21 N 1.46894 * 109.46867 * 180.02562 * 20 19 9 22 22 C 1.47017 * 111.00198 * 293.62916 * 21 20 19 23 23 C 1.53094 * 109.26149 * 177.60584 * 22 21 20 24 24 O 1.43017 * 109.25373 * 56.85293 * 23 22 21 25 25 C 1.43017 * 113.74097 * 301.32910 * 24 23 22 26 26 C 1.47014 * 110.99974 * 170.00030 * 21 20 19 27 27 C 1.50093 * 123.79452 * 359.02355 * 6 5 4 28 28 C 1.53014 * 110.13378 * 17.44245 * 27 6 5 29 29 H 1.08995 * 109.47683 * 299.60596 * 1 2 3 30 30 H 1.09003 * 109.46938 * 59.61549 * 1 2 3 31 31 H 1.09007 * 109.46913 * 179.60983 * 1 2 3 32 32 H 1.08990 * 109.36488 * 310.65649 * 4 2 1 33 33 H 1.09001 * 109.35697 * 70.38564 * 4 2 1 34 34 H 1.07999 * 118.10776 * 197.37875 * 5 4 2 35 35 H 1.08993 * 109.47422 * 33.37628 * 10 9 7 36 36 H 1.09007 * 109.46811 * 153.37981 * 10 9 7 37 37 H 0.97000 * 120.00189 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.47007 * 30.00229 * 19 9 7 39 39 H 1.08997 * 109.47109 * 150.00450 * 19 9 7 40 40 H 1.09004 * 109.46936 * 299.99742 * 20 19 9 41 41 H 1.08997 * 109.47197 * 59.99973 * 20 19 9 42 42 H 1.08999 * 109.50864 * 297.54940 * 22 21 20 43 43 H 1.09003 * 109.50208 * 57.67209 * 22 21 20 44 44 H 1.09000 * 109.50826 * 296.91934 * 23 22 21 45 45 H 1.08996 * 109.54447 * 176.80356 * 23 22 21 46 46 H 1.09006 * 109.50152 * 298.73422 * 25 24 23 47 47 H 1.09001 * 109.54094 * 178.63055 * 25 24 23 48 48 H 1.09000 * 109.50802 * 302.32182 * 26 21 20 49 49 H 1.09000 * 109.50952 * 62.45217 * 26 21 20 50 50 H 1.08998 * 109.36434 * 137.64808 * 27 6 5 51 51 H 1.08999 * 109.36269 * 257.38073 * 27 6 5 52 52 H 1.09001 * 109.62417 * 69.95815 * 28 27 6 53 53 H 1.08992 * 109.63300 * 190.54744 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0481 -0.7306 -1.2405 5 6 3.5280 -0.9542 -1.1261 6 6 4.1935 -0.8815 0.0063 7 6 5.6415 -1.1392 -0.0231 8 8 6.2134 -1.2752 -1.0877 9 7 6.3344 -1.2245 1.1298 10 6 5.6382 -1.5318 2.3816 11 6 5.1216 -0.2561 2.9954 12 1 5.2942 0.6890 2.5021 13 6 4.4286 -0.2955 4.1867 14 7 3.9774 0.8177 4.7221 15 14 4.1295 -1.9303 5.0396 16 1 5.2516 -2.2162 5.9693 17 1 2.8579 -1.8646 5.8038 18 1 4.0412 -3.0098 4.0236 19 6 7.7836 -1.0100 1.1311 20 6 8.4968 -2.3441 0.9017 21 7 9.9499 -2.1290 0.9036 22 6 10.3638 -1.3161 -0.2493 23 6 11.8725 -1.0667 -0.1759 24 8 12.5560 -2.3219 -0.1253 25 6 12.1777 -3.1392 0.9857 26 6 10.6720 -3.4094 0.9241 27 6 3.5619 -0.5452 1.3256 28 6 2.0451 -0.7307 1.2461 29 1 -0.3634 0.5077 0.8934 30 1 -0.3633 0.5198 -0.8865 31 1 -0.3633 -1.0277 -0.0070 32 1 1.5402 -1.6905 -1.3331 33 1 1.8457 -0.1278 -2.1258 34 1 4.0775 -1.1927 -2.0247 35 1 4.8026 -2.2014 2.1778 36 1 6.3296 -2.0136 3.0730 37 1 3.4895 0.7900 5.5600 38 1 8.0486 -0.3147 0.3345 39 1 8.0886 -0.5953 2.0918 40 1 8.2317 -3.0394 1.6983 41 1 8.1918 -2.7587 -0.0590 42 1 10.1268 -1.8458 -1.1720 43 1 9.8359 -0.3626 -0.2305 44 1 12.1030 -0.4903 0.7200 45 1 12.1938 -0.5127 -1.0579 46 1 12.4171 -2.6230 1.9155 47 1 12.7192 -4.0843 0.9443 48 1 10.3693 -3.9841 1.7995 49 1 10.4400 -3.9727 0.0202 50 1 3.9661 -1.2003 2.0973 51 1 3.7842 0.4914 1.5789 52 1 1.8096 -1.7924 1.1716 53 1 1.5776 -0.3106 2.1365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455227674.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:47 Heat of formation + Delta-G solvation = -36.485438 kcal Electronic energy + Delta-G solvation = -31010.479981 eV Core-core repulsion = 27076.391646 eV Total energy + Delta-G solvation = -3934.088334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.59913 -40.51705 -38.95355 -37.67037 -36.80499 -34.70560 -33.64366 -32.26648 -31.96332 -30.76517 -29.70521 -28.09514 -26.88179 -25.07442 -24.63391 -23.84677 -23.42683 -22.03823 -21.40988 -20.69802 -19.20287 -18.69772 -17.85416 -17.64353 -17.22702 -16.98595 -16.50154 -16.21187 -15.99865 -15.93826 -15.81644 -15.36300 -15.17485 -15.02861 -14.67260 -14.46709 -14.25295 -14.19728 -14.00401 -13.78966 -13.54247 -13.43035 -13.14701 -12.91874 -12.75518 -12.63412 -12.61270 -12.37733 -12.35898 -12.17360 -12.02100 -11.88023 -11.71038 -11.54053 -11.42552 -11.22447 -10.94083 -10.73230 -10.56735 -10.24571 -9.70716 -9.55860 -9.37484 -8.19478 -6.07564 0.52139 1.40539 1.44602 1.49644 2.11038 2.28710 2.38236 2.80700 2.95990 3.11798 3.62243 3.79406 3.86087 3.89576 3.97053 4.04036 4.07081 4.16074 4.24600 4.30922 4.36478 4.42135 4.44198 4.52593 4.54788 4.61853 4.69202 4.71243 4.71889 4.76119 4.78860 4.81579 4.84713 4.86808 4.91796 4.94870 4.99735 5.05770 5.17836 5.24086 5.38885 5.41236 5.47196 5.52937 5.63460 5.72991 5.75412 5.88181 5.89057 6.10832 6.13976 6.26709 6.58382 6.72858 7.18646 7.34695 8.95787 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.003573 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.120006 B = 7833.799800 C = 9507.608635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.051 0.949 4 C -0.077 4.077 5 C -0.087 4.087 6 C -0.177 4.177 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.599 5.599 10 C 0.208 3.792 11 C -0.503 4.503 12 H 0.043 0.957 13 C 0.027 3.973 14 N -0.932 5.932 15 Si 0.911 3.089 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.240 1.240 19 C 0.133 3.867 20 C 0.057 3.943 21 N -0.538 5.538 22 C 0.016 3.984 23 C 0.068 3.932 24 O -0.403 6.403 25 C 0.065 3.935 26 C 0.016 3.984 27 C -0.107 4.107 28 C -0.113 4.113 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.023 0.977 42 H 0.029 0.971 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.120 0.880 48 H 0.099 0.901 49 H 0.033 0.967 50 H 0.140 0.860 51 H 0.054 0.946 52 H 0.063 0.937 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -7.671 -7.574 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.179 4.179 7 C 0.340 3.660 8 O -0.471 6.471 9 N -0.329 5.329 10 C 0.086 3.914 11 C -0.542 4.542 12 H 0.061 0.939 13 C -0.172 4.172 14 N -0.572 5.572 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.164 1.164 19 C 0.010 3.990 20 C -0.072 4.072 21 N -0.263 5.263 22 C -0.113 4.113 23 C -0.009 4.009 24 O -0.322 6.322 25 C -0.012 4.012 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.083 0.917 47 H 0.138 0.862 48 H 0.117 0.883 49 H 0.052 0.948 50 H 0.157 0.843 51 H 0.072 0.928 52 H 0.081 0.919 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.869 -7.473 -7.642 11.745 hybrid contribution -0.627 -0.342 0.251 0.757 sum 4.242 -7.815 -7.391 11.563 Atomic orbital electron populations 1.21765 0.93398 1.02439 1.01942 1.21196 0.96651 0.98690 0.94726 0.93020 1.20620 0.90176 1.01959 0.98614 1.22969 0.97482 0.94004 0.96253 1.21184 0.92390 1.05997 0.98371 1.19052 0.88881 0.75093 0.82939 1.90634 1.72559 1.52785 1.31160 1.47658 1.07500 1.69613 1.08097 1.20210 0.93227 0.95832 0.82106 1.21109 1.34076 0.93110 1.05942 0.93896 1.25328 0.95694 0.98861 0.97295 1.69983 1.38592 1.28675 1.19953 0.86251 0.78238 0.81720 0.80282 1.19401 1.21139 1.16360 1.21259 0.78787 0.96495 1.02508 1.22308 0.86933 0.97781 1.00190 1.62192 1.04782 1.17475 1.41867 1.22851 0.98168 0.98869 0.91384 1.22736 0.88907 0.85642 1.03575 1.87940 1.64918 1.30362 1.49010 1.22807 0.92617 0.96261 0.89486 1.22883 0.95774 0.90474 1.02028 1.22207 0.94051 1.04020 0.93913 1.21722 0.96034 0.99946 0.97383 0.93279 0.91339 0.91657 0.88286 0.88781 0.87240 0.93146 0.93629 0.92526 0.92132 0.89672 0.90041 0.95871 0.95264 0.89823 0.91580 0.86799 0.91656 0.86230 0.88261 0.94836 0.84297 0.92804 0.91863 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.20 71.98 0.66 -2.46 16 2 C -0.09 -2.72 2.76 -10.67 -0.03 -2.75 16 3 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 4 C -0.08 -1.98 5.44 29.66 0.16 -1.81 16 5 C -0.09 -2.90 9.41 24.94 0.23 -2.66 16 6 C -0.18 -6.93 5.59 -18.28 -0.10 -7.04 16 7 C 0.55 23.24 7.31 86.57 0.63 23.88 16 8 O -0.59 -26.49 15.76 -4.08 -0.06 -26.55 16 9 N -0.60 -24.31 2.46 -865.03 -2.13 -26.44 16 10 C 0.21 8.67 3.77 85.63 0.32 8.99 16 11 C -0.50 -24.74 5.66 25.60 0.14 -24.60 16 12 H 0.04 2.45 7.11 -2.92 -0.02 2.43 16 13 C 0.03 1.37 5.05 84.66 0.43 1.80 16 14 N -0.93 -52.03 13.96 21.45 0.30 -51.73 16 15 Si 0.91 38.04 27.13 68.60 1.86 39.90 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 19 C 0.13 4.78 5.21 86.38 0.45 5.23 16 20 C 0.06 1.79 5.28 86.31 0.46 2.24 16 21 N -0.54 -14.61 4.73 -895.22 -4.23 -18.84 16 22 C 0.02 0.41 5.44 86.31 0.47 0.88 16 23 C 0.07 1.47 7.01 72.01 0.50 1.98 16 24 O -0.40 -9.51 10.83 -148.98 -1.61 -11.12 16 25 C 0.06 1.25 7.01 72.01 0.50 1.76 16 26 C 0.02 0.37 5.64 86.31 0.49 0.85 16 27 C -0.11 -4.41 3.22 29.66 0.10 -4.31 16 28 C -0.11 -3.95 5.30 30.72 0.16 -3.79 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.10 2.14 8.11 -2.39 -0.02 2.13 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 3.68 7.19 -2.91 -0.02 3.66 16 35 H 0.05 2.09 5.09 -2.39 -0.01 2.08 16 36 H 0.05 1.80 7.47 -2.38 -0.02 1.78 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.32 16 38 H 0.06 2.25 6.17 -2.39 -0.01 2.24 16 39 H 0.08 3.10 8.07 -2.39 -0.02 3.08 16 40 H 0.08 2.43 8.04 -2.39 -0.02 2.42 16 41 H 0.02 0.81 7.94 -2.39 -0.02 0.80 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 2.27 6.38 -2.39 -0.02 2.25 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 47 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 49 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.14 6.09 1.61 -24.75 -0.04 6.05 16 51 H 0.05 2.66 6.12 -2.39 -0.01 2.65 16 52 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 53 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.46 395.42 0.50 -60.96 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.79 Total: 35.63 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.59 Total: -1.81 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -6.06 Total: -97.01 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.68 Total: -37.67 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.86 Total: 39.90 kcal Total: -61.46 0.50 -60.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455227674.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.478 kcal (2) G-P(sol) polarization free energy of solvation -61.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds