Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.50240 * 2 1 4 4 C 1.53175 * 109.52093 * 239.92651 * 2 1 3 5 5 C 1.53142 * 109.35870 * 180.83494 * 4 2 1 6 6 N 1.46893 * 109.08661 * 56.39400 * 5 4 2 7 7 C 1.34777 * 120.67862 * 124.74990 * 6 5 4 8 8 O 1.21349 * 119.99838 * 351.71193 * 7 6 5 9 9 C 1.49446 * 119.99776 * 171.72145 * 7 6 5 10 10 O 1.21349 * 120.00335 * 353.88861 * 9 7 6 11 11 N 1.34771 * 120.00057 * 173.90069 * 9 7 6 12 12 C 1.46503 * 120.00306 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47165 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47051 * 299.99781 * 13 12 11 15 15 C 1.53007 * 109.47091 * 59.99915 * 13 12 11 16 16 C 1.50701 * 109.46879 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00175 * 358.73894 * 16 13 12 18 18 C 1.37879 * 119.99753 * 178.73288 * 16 13 12 19 19 N 1.31515 * 120.00099 * 2.74288 * 18 16 13 20 20 Si 1.86795 * 119.99920 * 182.74615 * 18 16 13 21 21 H 1.48501 * 109.47504 * 94.99346 * 20 18 16 22 22 H 1.48499 * 109.47050 * 214.99413 * 20 18 16 23 23 H 1.48502 * 109.47355 * 334.99270 * 20 18 16 24 24 C 1.47102 * 118.63960 * 304.72406 * 6 5 4 25 25 C 1.52727 * 109.49417 * 120.06121 * 2 1 3 26 26 C 1.53376 * 113.57611 * 46.58363 * 25 2 1 27 27 C 1.53851 * 86.95630 * 220.03415 * 26 25 2 28 28 C 1.53342 * 113.63795 * 308.58527 * 25 2 1 29 29 H 1.09000 * 109.47305 * 299.94421 * 1 2 3 30 30 H 1.08999 * 109.47321 * 59.93831 * 1 2 3 31 31 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.09012 * 109.48864 * 300.80256 * 4 2 1 33 33 H 1.09003 * 109.49082 * 60.86422 * 4 2 1 34 34 H 1.09000 * 109.53620 * 176.27567 * 5 4 2 35 35 H 1.08995 * 109.53373 * 296.43144 * 5 4 2 36 36 H 0.97005 * 120.00148 * 359.97438 * 11 9 7 37 37 H 1.08997 * 109.46793 * 299.99276 * 12 11 9 38 38 H 1.08995 * 109.47277 * 59.99001 * 12 11 9 39 39 H 1.09002 * 109.47444 * 54.93413 * 14 13 12 40 40 H 1.09003 * 109.47037 * 174.92742 * 14 13 12 41 41 H 1.09002 * 109.47383 * 294.92843 * 14 13 12 42 42 H 1.09004 * 109.46985 * 59.99755 * 15 13 12 43 43 H 1.08998 * 109.47207 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.46823 * 300.00184 * 15 13 12 45 45 H 0.96992 * 119.99893 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.63778 * 291.80622 * 24 6 5 47 47 H 1.09002 * 109.63840 * 171.19155 * 24 6 5 48 48 H 1.09000 * 113.63443 * 334.55213 * 26 25 2 49 49 H 1.09001 * 113.63340 * 105.51926 * 26 25 2 50 50 H 1.09001 * 113.60480 * 270.55290 * 27 26 25 51 51 H 1.08998 * 113.60070 * 139.68490 * 27 26 25 52 52 H 1.08998 * 113.63516 * 254.42727 * 28 25 2 53 53 H 1.09005 * 113.63326 * 25.29765 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0418 -0.7235 -1.2494 5 6 3.5730 -0.7395 -1.2351 6 7 4.0353 -1.3660 0.0105 7 6 4.8738 -2.4207 -0.0201 8 8 5.1361 -2.9568 -1.0767 9 6 5.4804 -2.9301 1.2472 10 8 5.3076 -2.3290 2.2871 11 7 6.2196 -4.0569 1.2351 12 6 6.8148 -4.5560 2.4773 13 6 7.5967 -5.8391 2.1887 14 6 6.6495 -6.8956 1.6165 15 6 8.7042 -5.5443 1.1749 16 6 8.2094 -6.3520 3.4664 17 1 8.0734 -5.8055 4.3879 18 6 8.9434 -7.5192 3.4588 19 7 9.1544 -8.1561 2.3277 20 14 9.6382 -8.1958 5.0553 21 1 8.7028 -9.2048 5.6140 22 1 10.9536 -8.8326 4.7921 23 1 9.8106 -7.0880 6.0291 24 6 3.5646 -0.8183 1.2921 25 6 2.0396 -0.7212 1.2461 26 6 1.3336 -2.0561 1.5141 27 6 1.3591 -1.6764 3.0048 28 6 1.4189 -0.2076 2.5508 29 1 -0.3634 0.5130 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6673 -1.7472 -1.2558 33 1 1.6918 -0.2023 -2.1404 34 1 3.9395 -1.3106 -2.0881 35 1 3.9488 0.2820 -1.2919 36 1 6.3576 -4.5376 0.4039 37 1 7.4892 -3.8031 2.8850 38 1 6.0258 -4.7662 3.1993 39 1 6.1389 -6.4909 0.7427 40 1 7.2212 -7.7775 1.3272 41 1 5.9138 -7.1714 2.3720 42 1 9.3789 -4.7915 1.5826 43 1 9.2615 -6.4583 0.9696 44 1 8.2613 -5.1730 0.2508 45 1 9.6710 -8.9769 2.3224 46 1 3.9905 0.1734 1.4452 47 1 3.8653 -1.4789 2.1053 48 1 0.3291 -2.1112 1.0943 49 1 1.9422 -2.9281 1.2748 50 1 2.2574 -2.0095 3.5247 51 1 0.4422 -1.9320 3.5360 52 1 2.0959 0.4062 3.1449 53 1 0.4387 0.2504 2.4178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591559374.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -60.130370 kcal Electronic energy + Delta-G solvation = -31071.524717 eV Core-core repulsion = 27136.411062 eV Total energy + Delta-G solvation = -3935.113656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.35354 -41.00151 -39.64343 -38.27275 -36.91636 -35.24323 -34.49268 -32.76632 -30.62353 -29.17714 -27.88149 -27.61286 -27.21677 -26.68515 -25.40592 -24.61297 -23.23450 -21.94965 -21.01920 -20.60938 -19.44814 -18.43078 -18.12163 -17.73666 -17.20914 -16.76513 -16.68169 -16.55194 -16.05676 -15.92070 -15.46537 -15.24663 -14.92061 -14.79491 -14.57063 -14.37753 -14.25640 -14.06602 -13.73517 -13.50657 -13.27820 -13.17091 -13.13099 -12.72070 -12.63235 -12.57508 -12.45193 -12.32362 -12.26432 -12.19017 -12.13620 -11.97933 -11.65131 -11.52357 -11.41378 -11.25437 -10.88108 -10.78969 -10.73051 -10.43270 -10.27855 -10.06496 -9.78506 -8.02761 -6.18862 0.30448 1.29502 1.43592 1.46963 1.55249 2.07682 2.41369 2.52424 3.21572 3.27610 3.55053 3.66173 3.68819 3.95715 3.99721 4.06353 4.14832 4.32580 4.36995 4.43359 4.45643 4.50954 4.65746 4.70477 4.75723 4.79394 4.83948 4.86583 4.89347 4.94778 4.98376 5.01375 5.04979 5.06940 5.10201 5.14558 5.14837 5.16036 5.25628 5.33062 5.40387 5.41623 5.51490 5.57093 5.62864 5.66926 5.67181 5.96115 6.08071 6.16741 6.24781 6.39284 6.68030 6.85091 6.93618 7.49196 8.97118 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.002700 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.066819 B =10367.837565 C =11114.914387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.083 0.917 4 C -0.121 4.121 5 C 0.101 3.899 6 N -0.571 5.571 7 C 0.507 3.493 8 O -0.548 6.548 9 C 0.497 3.503 10 O -0.535 6.535 11 N -0.680 5.680 12 C 0.144 3.856 13 C 0.052 3.948 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.027 3.973 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.092 3.908 25 C -0.090 4.090 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.117 4.117 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.412 0.588 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.100 0.900 49 H 0.032 0.968 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.070 0.930 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.172 18.103 -5.551 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 H 0.101 0.899 4 C -0.158 4.158 5 C -0.020 4.020 6 N -0.303 5.303 7 C 0.290 3.710 8 O -0.426 6.426 9 C 0.278 3.722 10 O -0.414 6.414 11 N -0.332 5.332 12 C 0.022 3.978 13 C 0.051 3.949 14 C -0.179 4.179 15 C -0.182 4.182 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.173 4.173 19 N -0.540 5.540 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.029 4.029 25 C -0.090 4.090 26 C -0.171 4.171 27 C -0.183 4.183 28 C -0.155 4.155 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.249 0.751 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.140 0.860 48 H 0.118 0.882 49 H 0.051 0.949 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.088 0.912 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.038 18.069 -5.451 26.107 hybrid contribution 0.944 -1.111 0.479 1.535 sum -17.094 16.958 -4.972 24.587 Atomic orbital electron populations 1.21953 0.93753 1.02057 1.02646 1.20966 0.96627 0.99147 0.92421 0.89852 1.21931 0.93043 1.01337 0.99538 1.21934 0.96082 0.98622 0.85379 1.48018 1.43264 1.29254 1.09802 1.20066 0.80742 0.81504 0.88704 1.90725 1.62048 1.57619 1.32240 1.20340 0.80513 0.82004 0.89332 1.90481 1.59771 1.57527 1.33670 1.46122 1.48867 1.24442 1.13721 1.21545 0.95924 0.96432 0.83940 1.18365 0.91987 0.89650 0.94902 1.21683 0.97729 1.01137 0.97358 1.21727 0.99230 1.00765 0.96516 1.21249 1.32783 1.08188 0.94296 0.92950 1.25503 0.96155 0.96962 0.98694 1.69941 1.40287 1.17685 1.26121 0.85692 0.77662 0.78456 0.80681 1.20543 1.21129 1.19658 1.22643 0.93141 1.01508 0.85648 1.21916 0.93324 0.97167 0.96639 1.23019 1.01058 0.96016 0.97041 1.22841 1.01867 0.97524 0.96104 1.22929 1.01949 0.95940 0.94660 0.91363 0.91613 0.92726 0.92770 0.88257 0.90021 0.89024 0.75070 0.92675 0.92551 0.95297 0.92035 0.95701 0.95767 0.91707 0.95370 0.93058 0.90276 0.86049 0.88181 0.94857 0.91883 0.90571 0.91171 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.41 71.98 0.61 -0.83 16 2 C -0.07 -0.93 2.40 -10.83 -0.03 -0.95 16 3 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -1.73 5.29 30.70 0.16 -1.57 16 5 C 0.10 1.91 6.39 86.35 0.55 2.46 16 6 N -0.57 -14.27 2.98 -820.83 -2.44 -16.71 16 7 C 0.51 16.22 7.74 87.27 0.68 16.89 16 8 O -0.55 -19.58 15.92 -3.24 -0.05 -19.63 16 9 C 0.50 17.50 7.75 87.27 0.68 18.18 16 10 O -0.53 -19.61 13.18 -3.24 -0.04 -19.66 16 11 N -0.68 -25.32 4.91 -464.42 -2.28 -27.60 16 12 C 0.14 6.01 4.50 86.38 0.39 6.40 16 13 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.57 8.06 71.98 0.58 -4.99 16 15 C -0.12 -5.76 8.09 71.98 0.58 -5.17 16 16 C -0.53 -27.48 8.01 25.60 0.21 -27.27 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 18 C 0.03 1.40 5.14 84.65 0.44 1.84 16 19 N -0.90 -48.65 9.42 21.45 0.20 -48.45 16 20 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 C 0.09 2.07 5.00 86.22 0.43 2.50 16 25 C -0.09 -1.52 0.78 -52.07 -0.04 -1.56 16 26 C -0.13 -2.58 6.64 31.01 0.21 -2.38 16 27 C -0.15 -2.68 7.73 31.17 0.24 -2.44 16 28 C -0.12 -1.69 7.03 31.00 0.22 -1.47 16 29 H 0.07 0.56 6.13 -2.39 -0.01 0.55 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.60 6.04 -2.39 -0.01 0.59 16 32 H 0.05 0.96 7.90 -2.38 -0.02 0.95 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.78 7.00 -2.39 -0.02 1.76 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 15.19 5.64 -92.70 -0.52 14.67 16 37 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.03 1.16 6.73 -2.39 -0.02 1.15 16 40 H 0.06 3.12 6.23 -2.39 -0.01 3.10 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 44 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 45 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.12 3.44 3.61 -42.35 -0.15 3.28 16 48 H 0.10 1.61 5.70 -2.39 -0.01 1.59 16 49 H 0.03 0.83 8.09 -2.39 -0.02 0.81 16 50 H 0.06 1.44 7.65 -2.39 -0.02 1.42 16 51 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 53 H 0.11 1.13 5.92 -2.38 -0.01 1.12 16 Total: -1.00 -58.69 391.87 3.52 -55.17 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.25 Total: 30.50 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.86 Total: 2.02 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.52 Total: -92.76 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.09 Total: -39.28 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -58.69 3.52 -55.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591559374.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.962 kcal (2) G-P(sol) polarization free energy of solvation -58.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds